Wall clock time and date at job start Mon Mar 30 2020 02:48:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47398 * 2 1 4 4 N 1.46896 * 109.47053 * 120.00246 * 2 1 3 5 5 C 1.46903 * 110.99908 * 274.99684 * 4 2 1 6 6 C 1.50697 * 109.47337 * 179.97438 * 5 4 2 7 7 H 1.08004 * 119.99936 * 0.02562 * 6 5 4 8 8 C 1.37882 * 120.00233 * 179.97438 * 6 5 4 9 9 N 1.31514 * 119.99739 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 120.00065 * 180.02562 * 8 6 5 11 11 H 1.48498 * 109.47141 * 0.02562 * 10 8 6 12 12 H 1.48505 * 109.47104 * 119.99877 * 10 8 6 13 13 H 1.48500 * 109.46791 * 240.00067 * 10 8 6 14 14 C 1.50703 * 109.46912 * 239.99922 * 2 1 3 15 15 N 1.30526 * 126.34292 * 284.68916 * 14 2 1 16 16 N 1.28596 * 109.66740 * 179.82421 * 15 14 2 17 17 C 1.30521 * 109.67684 * 0.44753 * 16 15 14 18 18 N 1.35494 * 107.30770 * 359.73285 * 17 16 15 19 19 C 1.46494 * 126.98617 * 179.97438 * 18 17 16 20 20 H 1.09001 * 109.47194 * 59.99819 * 1 2 3 21 21 H 1.08992 * 109.47399 * 179.97438 * 1 2 3 22 22 H 1.09004 * 109.46724 * 300.00478 * 1 2 3 23 23 H 1.00894 * 111.00396 * 38.94794 * 4 2 1 24 24 H 1.09003 * 109.46856 * 300.00136 * 5 4 2 25 25 H 1.09001 * 109.47072 * 60.00127 * 5 4 2 26 26 H 0.96995 * 119.99960 * 180.02562 * 9 8 6 27 27 H 1.08003 * 126.35166 * 179.72484 * 17 16 15 28 28 H 1.09001 * 109.47187 * 270.00182 * 19 18 17 29 29 H 1.08998 * 109.46766 * 29.99124 * 19 18 17 30 30 H 1.08994 * 109.47532 * 149.99727 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0196 -0.6925 1.1994 5 6 2.0825 0.2226 2.3469 6 6 2.5873 -0.5218 3.5560 7 1 2.8370 -1.5698 3.4796 8 6 2.7315 0.1352 4.7596 9 7 2.4280 1.4115 4.8525 10 14 3.3580 -0.7874 6.2582 11 1 3.6266 -2.2013 5.8924 12 1 4.6119 -0.1546 6.7406 13 1 2.3341 -0.7394 7.3327 14 6 2.0323 -0.7104 -1.2305 15 7 2.0388 -2.0003 -1.4305 16 7 2.5342 -2.2561 -2.5893 17 6 2.8750 -1.1418 -3.1773 18 7 2.5663 -0.1290 -2.3317 19 6 2.7691 1.3035 -2.5612 20 1 -0.3634 0.5139 -0.8900 21 1 -0.3634 -1.0276 -0.0005 22 1 -0.3633 0.5139 0.8900 23 1 1.4495 -1.4979 1.4100 24 1 2.7589 1.0461 2.1181 25 1 1.0871 0.6163 2.5525 26 1 2.5298 1.8738 5.6990 27 1 3.3206 -1.0448 -4.1563 28 1 3.7552 1.5936 -2.1984 29 1 2.6984 1.5141 -3.6283 30 1 2.0050 1.8688 -2.0278 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000050419292.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:44 Heat of formation + Delta-G solvation = 77.189569 kcal Electronic energy + Delta-G solvation = -13648.262031 eV Core-core repulsion = 11287.067431 eV Total energy + Delta-G solvation = -2361.194600 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.118 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -42.80878 -36.44679 -34.81211 -32.88053 -30.62917 -28.87371 -27.55193 -26.05613 -23.53808 -22.24510 -21.42451 -19.89735 -17.18116 -16.33817 -16.10178 -15.19558 -14.73919 -14.35997 -13.88885 -13.69582 -13.37873 -13.00538 -12.37171 -12.07996 -11.79756 -11.37086 -11.25559 -10.98257 -10.78299 -10.64900 -10.01866 -10.00275 -9.96224 -9.26090 -8.88106 -8.51739 -7.39004 -6.06576 -4.07769 2.06322 2.64836 3.22639 3.31234 3.38603 3.45455 4.41685 4.55081 4.61340 4.70193 4.97131 5.13459 5.23513 5.30135 5.36248 5.50929 5.67043 5.83664 6.08862 6.17244 6.32901 6.51289 7.03447 7.13398 7.34430 7.75296 8.05841 8.32920 8.53521 9.01987 9.06994 9.57501 11.04613 Molecular weight = 210.12amu Principal moments of inertia in cm(-1) A = 0.048246 B = 0.006834 C = 0.006574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 580.225652 B = 4096.102506 C = 4258.013209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.167 3.833 3 H 0.086 0.914 4 N -0.674 5.674 5 C 0.196 3.804 6 C -0.513 4.513 7 H 0.065 0.935 8 C 0.056 3.944 9 N -0.900 5.900 10 Si 0.899 3.101 11 H -0.271 1.271 12 H -0.284 1.284 13 H -0.284 1.284 14 C 0.208 3.792 15 N -0.284 5.284 16 N -0.303 5.303 17 C 0.131 3.869 18 N -0.480 5.480 19 C 0.073 3.927 20 H 0.050 0.950 21 H 0.065 0.935 22 H 0.072 0.928 23 H 0.343 0.657 24 H 0.027 0.973 25 H -0.008 1.008 26 H 0.261 0.739 27 H 0.213 0.787 28 H 0.083 0.917 29 H 0.089 0.911 30 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.440 2.801 -14.251 14.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.053 3.947 3 H 0.104 0.896 4 N -0.306 5.306 5 C 0.070 3.930 6 C -0.551 4.551 7 H 0.083 0.917 8 C -0.145 4.145 9 N -0.539 5.539 10 Si 0.727 3.273 11 H -0.195 1.195 12 H -0.210 1.210 13 H -0.210 1.210 14 C -0.061 4.061 15 N -0.123 5.123 16 N -0.142 5.142 17 C -0.157 4.157 18 N -0.172 5.172 19 C -0.070 4.070 20 H 0.069 0.931 21 H 0.084 0.916 22 H 0.091 0.909 23 H 0.162 0.838 24 H 0.045 0.955 25 H 0.009 0.991 26 H 0.070 0.930 27 H 0.229 0.771 28 H 0.101 0.899 29 H 0.107 0.893 30 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -0.961 1.552 -14.044 14.162 hybrid contribution -0.210 1.265 0.663 1.443 sum -1.171 2.817 -13.382 13.725 Atomic orbital electron populations 1.22459 0.95668 1.03014 1.02120 1.19741 0.92567 0.95889 0.86478 0.89552 1.60483 1.55895 1.10582 1.03630 1.19630 0.95489 0.91608 0.86296 1.21221 1.43379 0.97155 0.93375 0.91680 1.24973 0.95574 0.94941 0.99030 1.69961 1.49039 1.09009 1.25913 0.86410 0.78384 0.80129 0.82348 1.19533 1.21028 1.21036 1.25198 0.99188 0.90885 0.90785 1.74230 1.18129 1.11061 1.08911 1.74223 1.14416 1.23151 1.02433 1.26275 1.05841 0.84001 0.99537 1.46194 1.46774 1.09158 1.15073 1.22071 1.04135 0.77211 1.03619 0.93137 0.91592 0.90888 0.83804 0.95519 0.99054 0.92956 0.77077 0.89883 0.89273 0.89097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.65 9.14 37.16 0.34 -2.31 16 2 C 0.17 2.94 2.90 -68.87 -0.20 2.74 16 3 H 0.09 1.43 6.89 -51.93 -0.36 1.07 16 4 N -0.67 -14.74 6.22 -109.22 -0.68 -15.42 16 5 C 0.20 4.99 5.24 -4.98 -0.03 4.96 16 6 C -0.51 -14.51 9.32 -34.44 -0.32 -14.83 16 7 H 0.06 1.85 7.81 -52.48 -0.41 1.44 16 8 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 9 N -0.90 -26.41 13.29 55.43 0.74 -25.68 16 10 Si 0.90 21.76 29.54 -169.99 -5.02 16.74 16 11 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 12 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 13 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 14 C 0.21 3.61 6.87 -154.98 -1.07 2.55 16 15 N -0.28 -5.66 12.21 32.80 0.40 -5.25 16 16 N -0.30 -5.49 12.21 29.69 0.36 -5.13 16 17 C 0.13 1.76 12.74 -89.94 -1.15 0.61 16 18 N -0.48 -6.47 3.15 -122.69 -0.39 -6.86 16 19 C 0.07 0.61 10.84 59.84 0.65 1.26 16 20 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 21 H 0.07 1.04 8.13 -51.93 -0.42 0.62 16 22 H 0.07 1.16 7.45 -51.93 -0.39 0.77 16 23 H 0.34 7.51 8.46 -39.29 -0.33 7.18 16 24 H 0.03 0.72 8.06 -51.93 -0.42 0.30 16 25 H -0.01 -0.22 7.44 -51.93 -0.39 -0.60 16 26 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 27 H 0.21 1.72 8.06 -52.48 -0.42 1.30 16 28 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 29 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.09 0.70 7.46 -51.93 -0.39 0.31 16 LS Contribution 262.93 15.07 3.96 3.96 Total: -1.00 -33.85 262.93 -6.42 -40.26 By element: Atomic # 1 Polarization: 4.82 SS G_CDS: -3.93 Total: 0.89 kcal Atomic # 6 Polarization: -1.66 SS G_CDS: -1.87 Total: -3.53 kcal Atomic # 7 Polarization: -58.77 SS G_CDS: 0.43 Total: -58.33 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 3.96 Total: 3.96 kcal Total: -33.85 -6.42 -40.26 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050419292.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.454 kcal (2) G-P(sol) polarization free energy of solvation -33.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.265 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds