Wall clock time and date at job start Mon Mar 30 2020 02:48:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47398 * 2 1 4 4 N 1.46896 * 109.47053 * 120.00246 * 2 1 3 5 5 C 1.46903 * 110.99908 * 274.99684 * 4 2 1 6 6 C 1.50697 * 109.47337 * 179.97438 * 5 4 2 7 7 H 1.08004 * 119.99936 * 0.02562 * 6 5 4 8 8 C 1.37882 * 120.00233 * 179.97438 * 6 5 4 9 9 N 1.31514 * 119.99739 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 120.00065 * 180.02562 * 8 6 5 11 11 H 1.48498 * 109.47141 * 0.02562 * 10 8 6 12 12 H 1.48505 * 109.47104 * 119.99877 * 10 8 6 13 13 H 1.48500 * 109.46791 * 240.00067 * 10 8 6 14 14 C 1.50703 * 109.46912 * 239.99922 * 2 1 3 15 15 N 1.30526 * 126.34292 * 284.68916 * 14 2 1 16 16 N 1.28596 * 109.66740 * 179.82421 * 15 14 2 17 17 C 1.30521 * 109.67684 * 0.44753 * 16 15 14 18 18 N 1.35494 * 107.30770 * 359.73285 * 17 16 15 19 19 C 1.46494 * 126.98617 * 179.97438 * 18 17 16 20 20 H 1.09001 * 109.47194 * 59.99819 * 1 2 3 21 21 H 1.08992 * 109.47399 * 179.97438 * 1 2 3 22 22 H 1.09004 * 109.46724 * 300.00478 * 1 2 3 23 23 H 1.00894 * 111.00396 * 38.94794 * 4 2 1 24 24 H 1.09003 * 109.46856 * 300.00136 * 5 4 2 25 25 H 1.09001 * 109.47072 * 60.00127 * 5 4 2 26 26 H 0.96995 * 119.99960 * 180.02562 * 9 8 6 27 27 H 1.08003 * 126.35166 * 179.72484 * 17 16 15 28 28 H 1.09001 * 109.47187 * 270.00182 * 19 18 17 29 29 H 1.08998 * 109.46766 * 29.99124 * 19 18 17 30 30 H 1.08994 * 109.47532 * 149.99727 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0196 -0.6925 1.1994 5 6 2.0825 0.2226 2.3469 6 6 2.5873 -0.5218 3.5560 7 1 2.8370 -1.5698 3.4796 8 6 2.7315 0.1352 4.7596 9 7 2.4280 1.4115 4.8525 10 14 3.3580 -0.7874 6.2582 11 1 3.6266 -2.2013 5.8924 12 1 4.6119 -0.1546 6.7406 13 1 2.3341 -0.7394 7.3327 14 6 2.0323 -0.7104 -1.2305 15 7 2.0388 -2.0003 -1.4305 16 7 2.5342 -2.2561 -2.5893 17 6 2.8750 -1.1418 -3.1773 18 7 2.5663 -0.1290 -2.3317 19 6 2.7691 1.3035 -2.5612 20 1 -0.3634 0.5139 -0.8900 21 1 -0.3634 -1.0276 -0.0005 22 1 -0.3633 0.5139 0.8900 23 1 1.4495 -1.4979 1.4100 24 1 2.7589 1.0461 2.1181 25 1 1.0871 0.6163 2.5525 26 1 2.5298 1.8738 5.6990 27 1 3.3206 -1.0448 -4.1563 28 1 3.7552 1.5936 -2.1984 29 1 2.6984 1.5141 -3.6283 30 1 2.0050 1.8688 -2.0278 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000050419292.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:44 Heat of formation + Delta-G solvation = 53.527229 kcal Electronic energy + Delta-G solvation = -13649.288107 eV Core-core repulsion = 11287.067431 eV Total energy + Delta-G solvation = -2362.220676 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.118 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -43.98802 -38.04590 -35.88696 -34.91237 -32.25720 -30.25181 -28.38724 -27.97817 -25.00990 -23.76639 -22.90535 -21.21188 -18.76527 -17.87366 -17.23160 -16.82552 -16.14656 -15.97010 -15.42706 -15.16340 -14.33967 -14.19536 -13.72231 -13.69068 -13.37055 -13.11622 -12.69539 -12.56085 -12.51638 -12.28001 -12.00661 -11.34900 -11.22769 -11.01911 -10.67458 -10.16796 -9.16517 -8.23315 -6.32708 0.93468 1.40850 1.41849 1.55687 1.66708 1.98134 2.40714 3.10469 3.33750 3.53055 3.84609 3.93718 4.00301 4.15574 4.40106 4.51594 4.64946 4.69783 4.79447 4.95540 5.08714 5.14080 5.26052 5.31918 5.61502 5.99156 6.05883 6.41677 6.64595 6.86262 7.37640 7.85378 8.87940 Molecular weight = 210.12amu Principal moments of inertia in cm(-1) A = 0.048246 B = 0.006834 C = 0.006574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 580.225652 B = 4096.102506 C = 4258.013209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.169 3.831 3 H 0.095 0.905 4 N -0.683 5.683 5 C 0.215 3.785 6 C -0.538 4.538 7 H 0.056 0.944 8 C 0.008 3.992 9 N -0.929 5.929 10 Si 0.967 3.033 11 H -0.269 1.269 12 H -0.277 1.277 13 H -0.275 1.275 14 C 0.191 3.809 15 N -0.328 5.328 16 N -0.354 5.354 17 C 0.158 3.842 18 N -0.475 5.475 19 C 0.062 3.938 20 H 0.079 0.921 21 H 0.057 0.943 22 H 0.063 0.937 23 H 0.340 0.660 24 H 0.007 0.993 25 H -0.023 1.023 26 H 0.266 0.734 27 H 0.266 0.734 28 H 0.088 0.912 29 H 0.131 0.869 30 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.977 3.440 -15.423 15.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.056 3.944 3 H 0.113 0.887 4 N -0.314 5.314 5 C 0.087 3.913 6 C -0.576 4.576 7 H 0.075 0.925 8 C -0.191 4.191 9 N -0.569 5.569 10 Si 0.792 3.208 11 H -0.194 1.194 12 H -0.203 1.203 13 H -0.200 1.200 14 C -0.079 4.079 15 N -0.168 5.168 16 N -0.193 5.193 17 C -0.130 4.130 18 N -0.166 5.166 19 C -0.079 4.079 20 H 0.098 0.902 21 H 0.076 0.924 22 H 0.082 0.918 23 H 0.158 0.842 24 H 0.025 0.975 25 H -0.005 1.005 26 H 0.075 0.925 27 H 0.282 0.718 28 H 0.106 0.894 29 H 0.149 0.851 30 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -0.501 2.211 -15.241 15.408 hybrid contribution -0.325 1.125 0.894 1.473 sum -0.826 3.335 -14.346 14.752 Atomic orbital electron populations 1.22325 0.94022 1.02764 1.03063 1.19756 0.93938 0.95805 0.84926 0.88714 1.60327 1.56978 1.10226 1.03878 1.19238 0.93834 0.91198 0.86987 1.21547 1.44017 0.97087 0.94954 0.92537 1.25817 0.95520 0.95794 1.01963 1.70052 1.49595 1.10314 1.26951 0.85362 0.78074 0.78734 0.78608 1.19371 1.20257 1.20016 1.24912 1.00494 0.90689 0.91791 1.74113 1.19618 1.12718 1.10329 1.74115 1.16832 1.25712 1.02655 1.27245 1.02726 0.82677 1.00396 1.46436 1.45354 1.11132 1.13646 1.22504 1.04595 0.74167 1.06602 0.90204 0.92432 0.91775 0.84168 0.97522 1.00495 0.92511 0.71825 0.89367 0.85094 0.88605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.90 9.14 71.98 0.66 -4.24 16 2 C 0.17 5.91 2.90 44.17 0.13 6.03 16 3 H 0.09 3.10 6.89 -2.39 -0.02 3.08 16 4 N -0.68 -30.52 6.22 -499.46 -3.11 -33.63 16 5 C 0.21 11.21 5.24 85.56 0.45 11.65 16 6 C -0.54 -30.97 9.32 25.60 0.24 -30.73 16 7 H 0.06 3.28 7.81 -2.91 -0.02 3.25 16 8 C 0.01 0.44 5.46 84.66 0.46 0.90 16 9 N -0.93 -54.84 13.29 21.45 0.28 -54.56 16 10 Si 0.97 44.67 29.54 68.60 2.03 46.70 16 11 H -0.27 -12.26 7.11 99.48 0.71 -11.56 16 12 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 13 H -0.27 -12.20 7.11 99.48 0.71 -11.50 16 14 C 0.19 6.51 6.87 137.98 0.95 7.46 16 15 N -0.33 -13.11 12.21 -50.15 -0.61 -13.72 16 16 N -0.35 -12.54 12.21 -59.99 -0.73 -13.27 16 17 C 0.16 3.79 12.74 180.11 2.30 6.08 16 18 N -0.48 -11.61 3.15 -542.08 -1.71 -13.31 16 19 C 0.06 0.82 10.84 127.77 1.38 2.20 16 20 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 21 H 0.06 1.83 8.13 -2.39 -0.02 1.81 16 22 H 0.06 2.04 7.45 -2.39 -0.02 2.02 16 23 H 0.34 15.40 8.46 -89.70 -0.76 14.64 16 24 H 0.01 0.37 8.06 -2.39 -0.02 0.35 16 25 H -0.02 -1.22 7.44 -2.39 -0.02 -1.24 16 26 H 0.27 14.68 8.31 -92.71 -0.77 13.91 16 27 H 0.27 2.98 8.06 -2.91 -0.02 2.96 16 28 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 29 H 0.13 0.65 8.14 -2.39 -0.02 0.63 16 30 H 0.10 1.20 7.46 -2.39 -0.02 1.18 16 Total: -1.00 -74.68 262.93 3.10 -71.59 By element: Atomic # 1 Polarization: 10.46 SS G_CDS: 0.38 Total: 10.84 kcal Atomic # 6 Polarization: -7.21 SS G_CDS: 6.56 Total: -0.64 kcal Atomic # 7 Polarization: -122.61 SS G_CDS: -5.87 Total: -128.48 kcal Atomic # 14 Polarization: 44.67 SS G_CDS: 2.03 Total: 46.70 kcal Total: -74.68 3.10 -71.59 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050419292.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.114 kcal (2) G-P(sol) polarization free energy of solvation -74.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.587 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds