Wall clock time and date at job start Mon Mar 30 2020 02:40:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.46905 * 2 1 4 4 C 1.50694 * 109.46982 * 180.02562 * 3 2 1 5 5 N 1.33372 * 125.44789 * 90.02519 * 4 3 2 6 6 C 1.31575 * 109.69526 * 180.02562 * 5 4 3 7 7 N 1.38335 * 126.07258 * 179.97438 * 6 5 4 8 8 N 1.34987 * 107.85274 * 359.97438 * 6 5 4 9 9 C 1.46506 * 126.82393 * 180.02562 * 8 6 5 10 10 C 1.50699 * 109.46892 * 90.00177 * 9 8 6 11 11 H 1.08002 * 120.00511 * 359.97438 * 10 9 8 12 12 C 1.37884 * 119.99783 * 179.97438 * 10 9 8 13 13 N 1.31514 * 119.99573 * 180.27665 * 12 10 9 14 14 Si 1.86800 * 119.99781 * 359.97438 * 12 10 9 15 15 H 1.48501 * 109.46758 * 89.99934 * 14 12 10 16 16 H 1.48499 * 109.47026 * 209.99782 * 14 12 10 17 17 H 1.48496 * 109.47474 * 329.99818 * 14 12 10 18 18 N 1.30591 * 125.44154 * 270.35464 * 4 3 2 19 19 H 1.08993 * 109.47556 * 300.00002 * 1 2 3 20 20 H 1.09003 * 109.47000 * 60.00916 * 1 2 3 21 21 H 1.09006 * 109.46729 * 180.02562 * 1 2 3 22 22 H 1.08998 * 109.47129 * 239.99801 * 2 1 3 23 23 H 1.09001 * 109.46705 * 119.99524 * 2 1 3 24 24 H 1.08993 * 109.47015 * 59.99667 * 3 2 1 25 25 H 1.09003 * 109.46544 * 299.99363 * 3 2 1 26 26 H 0.97001 * 119.99996 * 180.02562 * 7 6 5 27 27 H 0.96996 * 120.00188 * 0.02562 * 7 6 5 28 28 H 1.08992 * 109.47369 * 330.00259 * 9 8 6 29 29 H 1.09005 * 109.46360 * 209.99873 * 9 8 6 30 30 H 0.97004 * 119.99485 * 179.72881 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5469 1.4426 -0.0006 5 7 4.3200 1.4432 -1.0875 6 6 5.5864 1.4425 -0.7308 7 7 6.6736 1.4423 -1.5863 8 7 5.6365 1.4419 0.6181 9 6 6.8410 1.4415 1.4522 10 6 7.2539 2.8622 1.7388 11 1 6.6772 3.6833 1.3393 12 6 8.3682 3.1138 2.5110 13 7 8.7254 4.3536 2.7656 14 14 9.3653 1.6936 3.2026 15 1 10.4271 1.3170 2.2351 16 1 9.9884 2.1051 4.4861 17 1 8.4731 0.5298 3.4362 18 7 4.3046 1.4358 1.0630 19 1 -0.3634 0.5138 0.8899 20 1 -0.3633 0.5137 -0.8901 21 1 -0.3633 -1.0277 0.0005 22 1 1.8933 -0.5139 -0.8899 23 1 1.8933 -0.5138 0.8901 24 1 1.6766 1.9563 0.8899 25 1 1.6766 1.9563 -0.8901 26 1 7.5742 1.4414 -1.2260 27 1 6.5353 1.4432 -2.5463 28 1 7.6463 0.9280 0.9271 29 1 6.6329 0.9272 2.3905 30 1 9.5070 4.5306 3.3122 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000054404687.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:25 Heat of formation + Delta-G solvation = 51.696540 kcal Electronic energy + Delta-G solvation = -13547.810641 eV Core-core repulsion = 11185.510580 eV Total energy + Delta-G solvation = -2362.300060 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.118 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -42.77123 -36.87117 -35.52735 -35.14504 -33.86466 -30.81321 -30.14404 -27.76394 -24.69462 -22.81867 -22.00042 -21.30008 -19.27983 -18.21639 -17.39464 -16.80721 -16.59009 -15.93835 -15.54522 -15.16710 -14.65857 -14.25246 -14.01781 -13.41925 -13.01160 -12.76644 -12.55065 -12.45334 -12.24548 -12.20500 -11.86531 -11.68114 -11.54665 -10.92244 -10.77428 -10.33598 -9.17157 -8.43397 -6.55932 1.04506 1.33312 1.35191 1.45854 1.54743 2.14061 2.24646 2.61763 2.88600 3.63828 3.81774 4.21579 4.23166 4.47673 4.49849 4.67538 4.82146 4.91628 5.05704 5.17732 5.21886 5.32411 5.42184 5.50623 5.62805 5.78626 6.06645 6.45519 6.54310 6.64267 7.08884 7.51647 8.73326 Molecular weight = 210.12amu Principal moments of inertia in cm(-1) A = 0.044987 B = 0.007421 C = 0.007028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 622.258351 B = 3771.959084 C = 3982.933899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.108 4.108 3 C -0.018 4.018 4 C 0.223 3.777 5 N -0.610 5.610 6 C 0.517 3.483 7 N -0.807 5.807 8 N -0.397 5.397 9 C 0.243 3.757 10 C -0.554 4.554 11 H 0.020 0.980 12 C 0.023 3.977 13 N -0.936 5.936 14 Si 0.954 3.046 15 H -0.246 1.246 16 H -0.279 1.279 17 H -0.247 1.247 18 N -0.366 5.366 19 H 0.060 0.940 20 H 0.066 0.934 21 H 0.065 0.935 22 H 0.059 0.941 23 H 0.050 0.950 24 H 0.087 0.913 25 H 0.099 0.901 26 H 0.419 0.581 27 H 0.430 0.570 28 H 0.071 0.929 29 H 0.049 0.951 30 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.389 -10.275 -6.839 14.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.147 4.147 3 C -0.057 4.057 4 C -0.060 4.060 5 N -0.351 5.351 6 C 0.151 3.849 7 N -0.366 5.366 8 N -0.191 5.191 9 C 0.122 3.878 10 C -0.592 4.592 11 H 0.038 0.962 12 C -0.177 4.177 13 N -0.574 5.574 14 Si 0.774 3.226 15 H -0.169 1.169 16 H -0.205 1.205 17 H -0.171 1.171 18 N -0.197 5.197 19 H 0.079 0.921 20 H 0.085 0.915 21 H 0.084 0.916 22 H 0.078 0.922 23 H 0.069 0.931 24 H 0.106 0.894 25 H 0.117 0.883 26 H 0.252 0.748 27 H 0.264 0.736 28 H 0.088 0.912 29 H 0.067 0.933 30 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -7.581 -10.157 -6.241 14.127 hybrid contribution 1.375 0.276 0.290 1.432 sum -6.206 -9.881 -5.952 13.099 Atomic orbital electron populations 1.21716 0.92989 1.02612 1.02688 1.21381 0.97550 0.94104 1.01643 1.20069 0.81628 0.99692 1.04357 1.24634 0.99002 0.97039 0.85320 1.70460 0.97932 1.36231 1.30487 1.20594 0.89679 0.92910 0.81728 1.40920 1.03472 1.84522 1.07686 1.50055 1.06133 1.58661 1.04291 1.19703 0.79631 0.96990 0.91501 1.21219 1.12217 0.91004 1.34754 0.96166 1.25857 0.97791 0.99106 0.94930 1.70039 1.27064 1.21700 1.38589 0.85643 0.79309 0.78717 0.78908 1.16949 1.20455 1.17102 1.77826 0.86891 1.31267 1.23670 0.92070 0.91531 0.91580 0.92227 0.93111 0.89447 0.88280 0.74831 0.73623 0.91159 0.93321 0.91639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.50 9.91 71.98 0.71 -1.79 16 2 C -0.11 -2.65 5.92 30.60 0.18 -2.47 16 3 C -0.02 -0.52 5.84 29.85 0.17 -0.34 16 4 C 0.22 9.08 7.38 138.62 1.02 10.10 16 5 N -0.61 -25.04 11.23 -189.85 -2.13 -27.18 16 6 C 0.52 21.35 9.10 260.78 2.37 23.72 16 7 N -0.81 -24.91 9.06 -58.86 -0.53 -25.45 16 8 N -0.40 -18.57 3.63 -353.58 -1.29 -19.85 16 9 C 0.24 11.45 5.13 85.63 0.44 11.89 16 10 C -0.55 -31.51 9.94 25.60 0.25 -31.25 16 11 H 0.02 1.35 8.06 -2.91 -0.02 1.32 16 12 C 0.02 1.29 5.47 84.66 0.46 1.75 16 13 N -0.94 -56.39 13.96 21.45 0.30 -56.09 16 14 Si 0.95 39.95 27.47 68.60 1.88 41.83 16 15 H -0.25 -9.30 7.11 99.48 0.71 -8.59 16 16 H -0.28 -11.68 7.11 99.48 0.71 -10.98 16 17 H -0.25 -9.68 6.54 99.48 0.65 -9.03 16 18 N -0.37 -17.23 12.68 -51.33 -0.65 -17.88 16 19 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 20 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 21 H 0.07 1.01 8.14 -2.38 -0.02 0.99 16 22 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 23 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 24 H 0.09 2.45 8.14 -2.39 -0.02 2.43 16 25 H 0.10 2.58 8.14 -2.39 -0.02 2.56 16 26 H 0.42 12.00 8.13 -92.71 -0.75 11.25 16 27 H 0.43 10.36 8.95 -92.71 -0.83 9.53 16 28 H 0.07 2.83 6.97 -2.39 -0.02 2.82 16 29 H 0.05 2.32 7.20 -2.38 -0.02 2.30 16 30 H 0.27 15.19 8.31 -92.71 -0.77 14.42 16 Total: -1.00 -71.86 262.10 2.72 -69.13 By element: Atomic # 1 Polarization: 24.35 SS G_CDS: -0.48 Total: 23.86 kcal Atomic # 6 Polarization: 5.99 SS G_CDS: 5.62 Total: 11.61 kcal Atomic # 7 Polarization: -142.14 SS G_CDS: -4.30 Total: -146.44 kcal Atomic # 14 Polarization: 39.95 SS G_CDS: 1.88 Total: 41.83 kcal Total: -71.86 2.72 -69.13 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054404687.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.831 kcal (2) G-P(sol) polarization free energy of solvation -71.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.134 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds