Wall clock time and date at job start Mon Mar 30 2020 02:39:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.46714 * 2 1 4 4 C 1.50698 * 109.47024 * 180.02562 * 3 2 1 5 5 C 1.34947 * 126.63679 * 270.02987 * 4 3 2 6 6 C 1.50702 * 125.48490 * 359.97438 * 5 4 3 7 7 N 1.46906 * 109.46663 * 90.00732 * 6 5 4 8 8 N 1.33455 * 109.02972 * 179.97438 * 5 4 3 9 9 N 1.28763 * 109.98652 * 359.70735 * 8 5 4 10 10 N 1.36666 * 126.63890 * 90.02350 * 4 3 2 11 11 C 1.37570 * 126.88427 * 359.97438 * 10 4 3 12 12 H 1.08007 * 119.99980 * 5.71056 * 11 10 4 13 13 C 1.39007 * 120.00040 * 185.70431 * 11 10 4 14 14 N 1.31250 * 120.00263 * 353.73772 * 13 11 10 15 15 Si 1.86803 * 119.99999 * 174.01409 * 13 11 10 16 16 H 1.48498 * 109.47116 * 94.98102 * 15 13 11 17 17 H 1.48499 * 109.47017 * 214.97894 * 15 13 11 18 18 H 1.48502 * 109.47063 * 334.97992 * 15 13 11 19 19 H 1.08997 * 109.47290 * 59.99681 * 1 2 3 20 20 H 1.09000 * 109.46810 * 179.97438 * 1 2 3 21 21 H 1.09004 * 109.47004 * 299.99423 * 1 2 3 22 22 H 1.08995 * 109.46774 * 240.00417 * 2 1 3 23 23 H 1.08992 * 109.47400 * 119.99864 * 2 1 3 24 24 H 1.08999 * 109.47614 * 60.00474 * 3 2 1 25 25 H 1.08997 * 109.47502 * 300.00189 * 3 2 1 26 26 H 1.09001 * 109.47281 * 210.00331 * 6 5 4 27 27 H 1.08995 * 109.47450 * 330.00933 * 6 5 4 28 28 H 1.00902 * 110.99680 * 179.97438 * 7 6 5 29 29 H 1.00894 * 110.99892 * 303.95222 * 7 6 5 30 30 H 0.97001 * 120.00419 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5469 1.4426 -0.0006 5 6 4.3527 1.4419 1.0819 6 6 3.8906 1.4415 2.5163 7 7 3.7403 0.0563 2.9818 8 7 5.6245 1.4417 0.6777 9 7 5.6774 1.4360 -0.6089 10 7 4.3620 1.4433 -1.0976 11 6 3.9713 1.4435 -2.4166 12 1 2.9255 1.5362 -2.6700 13 6 4.9225 1.3245 -3.4233 14 7 6.2002 1.3357 -3.1236 15 14 4.3822 1.1565 -5.2036 16 1 4.3819 2.4939 -5.8491 17 1 5.3218 0.2597 -5.9235 18 1 3.0136 0.5824 -5.2535 19 1 -0.3634 0.5139 -0.8899 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3633 0.5138 0.8901 22 1 1.8933 -0.5138 -0.8900 23 1 1.8934 -0.5138 0.8899 24 1 1.6767 1.9564 0.8900 25 1 1.6766 1.9564 -0.8899 26 1 4.6265 1.9549 3.1353 27 1 2.9322 1.9554 2.5895 28 1 3.4314 0.0290 3.9420 29 1 3.1116 -0.4596 2.3847 30 1 6.8640 1.2531 -3.8261 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000062295941.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:56 Heat of formation + Delta-G solvation = 69.255707 kcal Electronic energy + Delta-G solvation = -14059.455760 eV Core-core repulsion = 11697.917122 eV Total energy + Delta-G solvation = -2361.538638 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.118 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.19113 -34.91120 -34.47266 -33.39360 -31.20218 -29.31107 -26.40584 -25.44052 -23.43943 -21.48207 -20.81784 -18.68813 -17.49554 -15.56134 -15.27399 -14.77700 -14.31971 -14.19011 -13.63923 -13.30390 -13.03996 -12.53575 -12.14653 -11.74345 -11.48260 -11.37671 -11.16414 -11.04838 -10.81671 -10.57619 -10.26931 -9.89710 -9.49990 -9.08383 -8.59515 -8.15248 -7.23361 -6.79630 -4.57493 2.82309 2.95982 3.02323 3.31431 3.70089 4.09802 4.61913 4.82061 5.28193 5.42269 5.43508 5.52497 5.77917 5.88053 5.93566 6.13467 6.17314 6.21736 6.33921 6.42643 6.51261 6.72223 6.89288 7.01684 7.23890 7.64532 7.82662 7.93085 8.01417 8.56003 9.17978 10.17704 10.29215 Molecular weight = 210.12amu Principal moments of inertia in cm(-1) A = 0.030039 B = 0.011639 C = 0.008797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 931.889787 B = 2405.191607 C = 3181.962284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.117 4.117 3 C -0.023 4.023 4 C -0.084 4.084 5 C -0.067 4.067 6 C 0.163 3.837 7 N -0.843 5.843 8 N -0.315 5.315 9 N -0.096 5.096 10 N -0.144 5.144 11 C -0.312 4.312 12 H 0.119 0.881 13 C 0.048 3.952 14 N -0.759 5.759 15 Si 0.938 3.062 16 H -0.268 1.268 17 H -0.272 1.272 18 H -0.260 1.260 19 H 0.052 0.948 20 H 0.049 0.951 21 H 0.049 0.951 22 H 0.064 0.936 23 H 0.057 0.943 24 H 0.065 0.935 25 H 0.063 0.937 26 H 0.071 0.929 27 H 0.025 0.975 28 H 0.329 0.671 29 H 0.336 0.664 30 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.382 -1.068 2.339 10.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.156 4.156 3 C -0.063 4.063 4 C -0.220 4.220 5 C -0.215 4.215 6 C 0.031 3.969 7 N -0.374 5.374 8 N -0.174 5.174 9 N -0.072 5.072 10 N 0.085 4.915 11 C -0.449 4.449 12 H 0.136 0.864 13 C -0.172 4.172 14 N -0.385 5.385 15 Si 0.761 3.239 16 H -0.193 1.193 17 H -0.197 1.197 18 H -0.184 1.184 19 H 0.071 0.929 20 H 0.069 0.931 21 H 0.068 0.932 22 H 0.083 0.917 23 H 0.076 0.924 24 H 0.083 0.917 25 H 0.082 0.918 26 H 0.089 0.911 27 H 0.043 0.957 28 H 0.141 0.859 29 H 0.150 0.850 30 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -7.723 -1.121 1.780 8.004 hybrid contribution -2.246 0.182 -0.660 2.348 sum -9.969 -0.939 1.120 10.075 Atomic orbital electron populations 1.21787 0.96435 1.01069 1.01394 1.21527 0.94470 0.97253 1.02311 1.19725 0.88728 0.96322 1.01534 1.20819 0.93545 1.19903 0.87737 1.20286 0.89825 1.17394 0.94040 1.19658 0.97576 0.88557 0.91128 1.58733 1.58029 1.14783 1.05881 1.73996 1.19241 1.17416 1.06770 1.82568 0.95353 1.29228 1.00009 1.46606 1.05656 1.34105 1.05101 1.20060 0.95301 1.51501 0.78015 0.86384 1.25759 0.94697 0.95027 1.01721 1.70155 1.00426 1.32899 1.34998 0.85748 0.79473 0.79073 0.79616 1.19349 1.19721 1.18431 0.92867 0.93140 0.93152 0.91681 0.92407 0.91669 0.91808 0.91091 0.95669 0.85900 0.85003 0.90760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.85 9.91 37.16 0.37 -1.48 16 2 C -0.12 -1.86 5.92 -26.73 -0.16 -2.02 16 3 C -0.02 -0.43 5.24 -27.88 -0.15 -0.57 16 4 C -0.08 -2.00 6.23 -81.61 -0.51 -2.51 16 5 C -0.07 -1.63 6.61 -83.05 -0.55 -2.18 16 6 C 0.16 3.07 7.10 -4.97 -0.04 3.03 16 7 N -0.84 -14.20 9.61 -11.41 -0.11 -14.31 16 8 N -0.31 -8.97 12.33 33.16 0.41 -8.56 16 9 N -0.10 -2.90 11.75 60.35 0.71 -2.19 16 10 N -0.14 -3.96 3.78 -7.77 -0.03 -3.99 16 11 C -0.31 -8.10 10.04 -14.69 -0.15 -8.25 16 12 H 0.12 2.74 7.18 -52.48 -0.38 2.36 16 13 C 0.05 1.20 5.50 -17.52 -0.10 1.11 16 14 N -0.76 -20.84 11.91 55.50 0.66 -20.18 16 15 Si 0.94 18.35 29.56 -169.99 -5.02 13.32 16 16 H -0.27 -5.14 7.11 56.52 0.40 -4.74 16 17 H -0.27 -5.29 7.11 56.52 0.40 -4.89 16 18 H -0.26 -4.85 7.11 56.52 0.40 -4.45 16 19 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 20 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 21 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 22 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 23 H 0.06 0.90 6.37 -51.93 -0.33 0.57 16 24 H 0.06 1.04 7.14 -51.93 -0.37 0.67 16 25 H 0.06 1.15 7.46 -51.93 -0.39 0.76 16 26 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 27 H 0.03 0.42 7.13 -51.93 -0.37 0.05 16 28 H 0.33 4.32 9.08 -39.29 -0.36 3.96 16 29 H 0.34 5.50 7.21 -39.29 -0.28 5.22 16 30 H 0.28 7.00 8.31 -40.82 -0.34 6.66 16 LS Contribution 257.39 15.07 3.88 3.88 Total: -1.00 -32.09 257.39 -4.50 -36.59 By element: Atomic # 1 Polarization: 12.03 SS G_CDS: -3.72 Total: 8.31 kcal Atomic # 6 Polarization: -11.60 SS G_CDS: -1.27 Total: -12.87 kcal Atomic # 7 Polarization: -50.87 SS G_CDS: 1.64 Total: -49.23 kcal Atomic # 14 Polarization: 18.35 SS G_CDS: -5.02 Total: 13.32 kcal Total LS contribution 3.88 Total: 3.88 kcal Total: -32.09 -4.50 -36.59 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000062295941.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.849 kcal (2) G-P(sol) polarization free energy of solvation -32.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.593 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds