Wall clock time and date at job start Mon Mar 30 2020 02:37:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.34950 * 126.63719 * 2 1 4 4 C 1.50696 * 125.48447 * 359.95933 * 3 2 1 5 5 C 1.52997 * 109.47055 * 90.00327 * 4 3 2 6 6 C 1.53006 * 109.47127 * 179.97438 * 5 4 3 7 7 N 1.46898 * 109.47006 * 180.02562 * 6 5 4 8 8 N 1.33453 * 109.02457 * 180.22834 * 3 2 1 9 9 N 1.28762 * 109.99162 * 359.54427 * 8 3 2 10 10 N 1.36675 * 126.63687 * 179.97438 * 2 1 3 11 11 C 1.37570 * 126.88301 * 0.04387 * 10 2 1 12 12 H 1.07998 * 120.00225 * 359.97438 * 11 10 2 13 13 C 1.39011 * 119.99650 * 179.97438 * 11 10 2 14 14 N 1.31252 * 120.00277 * 359.97438 * 13 11 10 15 15 Si 1.86804 * 119.99770 * 179.97438 * 13 11 10 16 16 H 1.48497 * 109.47019 * 359.97438 * 15 13 11 17 17 H 1.48498 * 109.46947 * 119.99771 * 15 13 11 18 18 H 1.48500 * 109.46959 * 239.99660 * 15 13 11 19 19 H 1.08996 * 109.46813 * 90.00659 * 1 2 3 20 20 H 1.08997 * 109.47117 * 210.00317 * 1 2 3 21 21 H 1.08994 * 109.47268 * 330.00422 * 1 2 3 22 22 H 1.09001 * 109.47324 * 330.00039 * 4 3 2 23 23 H 1.09004 * 109.47043 * 210.00407 * 4 3 2 24 24 H 1.09001 * 109.46832 * 59.99966 * 5 4 3 25 25 H 1.08993 * 109.47194 * 299.99487 * 5 4 3 26 26 H 1.09001 * 109.46801 * 300.00272 * 6 5 4 27 27 H 1.09001 * 109.46998 * 59.99868 * 6 5 4 28 28 H 1.00894 * 110.99951 * 56.04708 * 7 6 5 29 29 H 1.00898 * 110.99876 * 180.02562 * 7 6 5 30 30 H 0.96993 * 120.00349 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3123 1.0829 0.0000 4 6 1.8497 2.5171 -0.0009 5 6 1.6924 3.0031 1.4413 6 6 1.2232 4.4594 1.4404 7 7 1.0728 4.9262 2.8251 8 7 3.5843 0.6791 -0.0050 9 7 3.6377 -0.6074 0.0014 10 7 2.3226 -1.0967 0.0005 11 6 1.9323 -2.4159 0.0002 12 1 0.8823 -2.6684 0.0000 13 6 2.8896 -3.4239 0.0003 14 7 4.1658 -3.1170 0.0000 15 14 2.3597 -5.2152 0.0007 16 1 0.8768 -5.2927 0.0015 17 1 2.8904 -5.8886 -1.2118 18 1 2.8908 -5.8882 1.2132 19 1 -0.3633 -0.0001 -1.0276 20 1 -0.3633 -0.8899 0.5139 21 1 -0.3633 0.8900 0.5137 22 1 0.8914 2.5895 -0.5153 23 1 2.5854 3.1359 -0.5146 24 1 2.6507 2.9307 1.9556 25 1 0.9566 2.3844 1.9550 26 1 1.9593 5.0779 0.9268 27 1 0.2651 4.5322 0.9259 28 1 1.9315 4.8086 3.3416 29 1 0.7632 5.8861 2.8515 30 1 4.8337 -3.8203 0.0005 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000062296122.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:22 Heat of formation + Delta-G solvation = 66.582485 kcal Electronic energy + Delta-G solvation = -13639.169605 eV Core-core repulsion = 11277.515048 eV Total energy + Delta-G solvation = -2361.654557 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.118 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.13613 -35.82749 -34.10888 -32.34096 -31.80080 -29.37694 -26.46578 -25.48074 -23.76045 -21.13399 -20.82719 -18.75585 -17.32753 -15.78601 -15.43477 -14.86710 -14.46750 -14.09795 -14.07457 -12.84875 -12.70757 -12.34899 -12.03786 -11.87849 -11.61871 -11.45906 -11.22545 -11.09720 -10.84290 -10.51836 -10.29744 -9.85437 -9.49123 -9.08390 -8.64512 -8.57964 -7.14802 -6.78247 -4.56502 2.83234 2.97292 3.04205 3.34196 3.71116 4.12092 4.63884 4.72916 4.84334 5.30722 5.41174 5.75520 5.85379 6.03262 6.12111 6.15951 6.19033 6.34126 6.36861 6.51566 6.57858 6.82310 6.89986 7.06674 7.18988 7.31572 7.46151 7.89264 7.96772 8.57091 9.19465 10.19076 10.28547 Molecular weight = 210.12amu Principal moments of inertia in cm(-1) A = 0.058890 B = 0.007132 C = 0.006782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 475.349487 B = 3925.284216 C = 4127.368700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 C -0.089 4.089 3 C -0.069 4.069 4 C -0.014 4.014 5 C -0.109 4.109 6 C 0.061 3.939 7 N -0.854 5.854 8 N -0.330 5.330 9 N -0.096 5.096 10 N -0.147 5.147 11 C -0.312 4.312 12 H 0.120 0.880 13 C 0.047 3.953 14 N -0.761 5.761 15 Si 0.941 3.059 16 H -0.260 1.260 17 H -0.271 1.271 18 H -0.271 1.271 19 H 0.054 0.946 20 H 0.057 0.943 21 H 0.064 0.936 22 H 0.061 0.939 23 H 0.060 0.940 24 H 0.059 0.941 25 H 0.067 0.933 26 H 0.024 0.976 27 H 0.069 0.931 28 H 0.340 0.660 29 H 0.335 0.665 30 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.965 6.144 1.401 9.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.224 4.224 3 C -0.216 4.216 4 C -0.054 4.054 5 C -0.148 4.148 6 C -0.070 4.070 7 N -0.383 5.383 8 N -0.189 5.189 9 N -0.072 5.072 10 N 0.081 4.919 11 C -0.449 4.449 12 H 0.138 0.862 13 C -0.173 4.173 14 N -0.388 5.388 15 Si 0.764 3.236 16 H -0.184 1.184 17 H -0.196 1.196 18 H -0.196 1.196 19 H 0.073 0.927 20 H 0.076 0.924 21 H 0.083 0.917 22 H 0.080 0.920 23 H 0.079 0.921 24 H 0.077 0.923 25 H 0.086 0.914 26 H 0.042 0.958 27 H 0.087 0.913 28 H 0.152 0.848 29 H 0.147 0.853 30 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -5.662 5.150 1.448 7.790 hybrid contribution -0.477 -0.096 -0.251 0.547 sum -6.139 5.054 1.197 8.041 Atomic orbital electron populations 1.19899 0.88986 1.01634 1.00871 1.20922 0.94113 0.87630 1.19769 1.20428 0.89713 0.94560 1.16941 1.19508 0.99713 0.90812 0.95412 1.21543 1.01490 0.94011 0.97729 1.21872 0.99982 0.96351 0.88782 1.58722 1.38304 1.26607 1.14664 1.73983 1.19312 1.07035 1.18601 1.82532 0.95420 0.99901 1.29312 1.46624 1.05708 1.05190 1.34359 1.20145 0.94927 0.77930 1.51877 0.86245 1.25775 0.94694 1.01841 0.94960 1.70158 1.00324 1.34940 1.33371 0.85662 0.79677 0.79565 0.78731 1.18373 1.19607 1.19604 0.92741 0.92440 0.91732 0.91994 0.92084 0.92259 0.91421 0.95788 0.91258 0.84799 0.85296 0.90835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -1.03 9.70 36.00 0.35 -0.68 16 2 C -0.09 -2.18 6.98 -81.60 -0.57 -2.75 16 3 C -0.07 -1.66 6.35 -83.06 -0.53 -2.19 16 4 C -0.01 -0.26 5.36 -27.89 -0.15 -0.41 16 5 C -0.11 -1.78 5.46 -26.73 -0.15 -1.93 16 6 C 0.06 0.78 6.79 -3.82 -0.03 0.76 16 7 N -0.85 -10.03 9.62 -10.37 -0.10 -10.13 16 8 N -0.33 -9.30 12.33 33.16 0.41 -8.89 16 9 N -0.10 -2.92 11.73 60.35 0.71 -2.21 16 10 N -0.15 -4.12 3.78 -7.77 -0.03 -4.15 16 11 C -0.31 -8.24 10.05 -14.69 -0.15 -8.39 16 12 H 0.12 2.82 7.22 -52.49 -0.38 2.44 16 13 C 0.05 1.18 5.50 -17.51 -0.10 1.09 16 14 N -0.76 -21.05 11.89 55.50 0.66 -20.39 16 15 Si 0.94 18.47 29.55 -169.99 -5.02 13.45 16 16 H -0.26 -4.84 7.11 56.52 0.40 -4.44 16 17 H -0.27 -5.25 7.11 56.52 0.40 -4.85 16 18 H -0.27 -5.26 7.11 56.52 0.40 -4.86 16 19 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 20 H 0.06 1.04 7.51 -51.93 -0.39 0.65 16 21 H 0.06 1.05 7.77 -51.93 -0.40 0.64 16 22 H 0.06 1.00 7.75 -51.93 -0.40 0.60 16 23 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 24 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 25 H 0.07 1.18 8.14 -51.93 -0.42 0.75 16 26 H 0.02 0.29 8.14 -51.93 -0.42 -0.13 16 27 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 28 H 0.34 3.78 8.99 -39.29 -0.35 3.42 16 29 H 0.34 3.11 9.08 -39.29 -0.36 2.76 16 30 H 0.28 7.00 8.31 -40.82 -0.34 6.66 16 LS Contribution 261.87 15.07 3.95 3.95 Total: -1.00 -32.32 261.87 -4.70 -37.02 By element: Atomic # 1 Polarization: 9.82 SS G_CDS: -3.96 Total: 5.86 kcal Atomic # 6 Polarization: -13.19 SS G_CDS: -1.31 Total: -14.50 kcal Atomic # 7 Polarization: -47.42 SS G_CDS: 1.65 Total: -45.77 kcal Atomic # 14 Polarization: 18.47 SS G_CDS: -5.02 Total: 13.45 kcal Total LS contribution 3.95 Total: 3.95 kcal Total: -32.32 -4.70 -37.02 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000062296122.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.602 kcal (2) G-P(sol) polarization free energy of solvation -32.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.020 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds