Wall clock time and date at job start Mon Mar 30 2020 02:37:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.34950 * 126.63719 * 2 1 4 4 C 1.50696 * 125.48447 * 359.95933 * 3 2 1 5 5 C 1.52997 * 109.47055 * 90.00327 * 4 3 2 6 6 C 1.53006 * 109.47127 * 179.97438 * 5 4 3 7 7 N 1.46898 * 109.47006 * 180.02562 * 6 5 4 8 8 N 1.33453 * 109.02457 * 180.22834 * 3 2 1 9 9 N 1.28762 * 109.99162 * 359.54427 * 8 3 2 10 10 N 1.36675 * 126.63687 * 179.97438 * 2 1 3 11 11 C 1.37570 * 126.88301 * 0.04387 * 10 2 1 12 12 H 1.07998 * 120.00225 * 359.97438 * 11 10 2 13 13 C 1.39011 * 119.99650 * 179.97438 * 11 10 2 14 14 N 1.31252 * 120.00277 * 359.97438 * 13 11 10 15 15 Si 1.86804 * 119.99770 * 179.97438 * 13 11 10 16 16 H 1.48497 * 109.47019 * 359.97438 * 15 13 11 17 17 H 1.48498 * 109.46947 * 119.99771 * 15 13 11 18 18 H 1.48500 * 109.46959 * 239.99660 * 15 13 11 19 19 H 1.08996 * 109.46813 * 90.00659 * 1 2 3 20 20 H 1.08997 * 109.47117 * 210.00317 * 1 2 3 21 21 H 1.08994 * 109.47268 * 330.00422 * 1 2 3 22 22 H 1.09001 * 109.47324 * 330.00039 * 4 3 2 23 23 H 1.09004 * 109.47043 * 210.00407 * 4 3 2 24 24 H 1.09001 * 109.46832 * 59.99966 * 5 4 3 25 25 H 1.08993 * 109.47194 * 299.99487 * 5 4 3 26 26 H 1.09001 * 109.46801 * 300.00272 * 6 5 4 27 27 H 1.09001 * 109.46998 * 59.99868 * 6 5 4 28 28 H 1.00894 * 110.99951 * 56.04708 * 7 6 5 29 29 H 1.00898 * 110.99876 * 180.02562 * 7 6 5 30 30 H 0.96993 * 120.00349 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3123 1.0829 0.0000 4 6 1.8497 2.5171 -0.0009 5 6 1.6924 3.0031 1.4413 6 6 1.2232 4.4594 1.4404 7 7 1.0728 4.9262 2.8251 8 7 3.5843 0.6791 -0.0050 9 7 3.6377 -0.6074 0.0014 10 7 2.3226 -1.0967 0.0005 11 6 1.9323 -2.4159 0.0002 12 1 0.8823 -2.6684 0.0000 13 6 2.8896 -3.4239 0.0003 14 7 4.1658 -3.1170 0.0000 15 14 2.3597 -5.2152 0.0007 16 1 0.8768 -5.2927 0.0015 17 1 2.8904 -5.8886 -1.2118 18 1 2.8908 -5.8882 1.2132 19 1 -0.3633 -0.0001 -1.0276 20 1 -0.3633 -0.8899 0.5139 21 1 -0.3633 0.8900 0.5137 22 1 0.8914 2.5895 -0.5153 23 1 2.5854 3.1359 -0.5146 24 1 2.6507 2.9307 1.9556 25 1 0.9566 2.3844 1.9550 26 1 1.9593 5.0779 0.9268 27 1 0.2651 4.5322 0.9259 28 1 1.9315 4.8086 3.3416 29 1 0.7632 5.8861 2.8515 30 1 4.8337 -3.8203 0.0005 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000062296122.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:21 Heat of formation + Delta-G solvation = 41.790676 kcal Electronic energy + Delta-G solvation = -13640.244659 eV Core-core repulsion = 11277.515048 eV Total energy + Delta-G solvation = -2362.729611 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.118 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -42.09467 -37.07390 -35.98054 -33.93015 -33.58831 -30.96030 -28.08663 -27.39847 -25.27332 -22.95254 -22.21939 -20.62524 -19.22746 -17.37726 -16.82053 -16.16841 -16.10384 -15.76734 -15.42814 -14.51498 -14.15277 -14.05947 -13.54483 -13.42590 -13.15796 -12.98123 -12.81734 -12.69955 -12.20958 -12.01184 -11.71382 -11.68696 -11.39380 -11.02030 -10.56587 -9.56643 -9.07602 -8.68646 -6.60262 1.09683 1.36435 1.57784 1.62651 2.05949 2.20003 2.78849 2.92607 3.71711 4.07535 4.11942 4.41449 4.46993 4.51835 4.61602 4.67687 4.83515 4.88527 4.98701 4.99104 5.07788 5.17293 5.36169 5.46832 5.54962 5.99787 6.07394 6.26846 6.63554 6.65699 7.24028 8.25492 8.33379 Molecular weight = 210.12amu Principal moments of inertia in cm(-1) A = 0.058890 B = 0.007132 C = 0.006782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 475.349487 B = 3925.284216 C = 4127.368700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 C -0.102 4.102 3 C -0.069 4.069 4 C -0.011 4.011 5 C -0.099 4.099 6 C 0.070 3.930 7 N -0.861 5.861 8 N -0.367 5.367 9 N -0.160 5.160 10 N -0.165 5.165 11 C -0.341 4.341 12 H 0.145 0.855 13 C -0.003 4.003 14 N -0.814 5.814 15 Si 1.027 2.973 16 H -0.237 1.237 17 H -0.267 1.267 18 H -0.268 1.268 19 H 0.074 0.926 20 H 0.062 0.938 21 H 0.093 0.907 22 H 0.092 0.908 23 H 0.063 0.937 24 H 0.034 0.966 25 H 0.057 0.943 26 H 0.033 0.967 27 H 0.085 0.915 28 H 0.342 0.658 29 H 0.352 0.648 30 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.620 6.266 1.382 11.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.236 4.236 3 C -0.218 4.218 4 C -0.051 4.051 5 C -0.138 4.138 6 C -0.061 4.061 7 N -0.392 5.392 8 N -0.225 5.225 9 N -0.135 5.135 10 N 0.062 4.938 11 C -0.477 4.477 12 H 0.162 0.838 13 C -0.218 4.218 14 N -0.441 5.441 15 Si 0.844 3.156 16 H -0.159 1.159 17 H -0.192 1.192 18 H -0.193 1.193 19 H 0.093 0.907 20 H 0.081 0.919 21 H 0.111 0.889 22 H 0.111 0.889 23 H 0.082 0.918 24 H 0.053 0.947 25 H 0.076 0.924 26 H 0.051 0.949 27 H 0.103 0.897 28 H 0.154 0.846 29 H 0.165 0.835 30 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -8.317 5.323 1.432 9.978 hybrid contribution 0.307 -0.038 -0.235 0.389 sum -8.010 5.285 1.197 9.671 Atomic orbital electron populations 1.20068 0.84847 1.03337 1.02671 1.22010 0.96739 0.86721 1.18180 1.21442 0.88529 0.97433 1.14393 1.19672 1.01027 0.87258 0.97129 1.21391 1.00056 0.96482 0.95832 1.21726 1.00870 0.93745 0.89731 1.58679 1.38583 1.27979 1.13975 1.73935 1.21591 1.06769 1.20176 1.82463 0.97399 1.00903 1.32762 1.46991 1.05752 1.06570 1.34514 1.20941 0.96502 0.77932 1.52290 0.83795 1.27119 0.94229 1.07154 0.93254 1.70323 1.02147 1.36998 1.34664 0.84436 0.80419 0.72106 0.78647 1.15927 1.19218 1.19291 0.90692 0.91882 0.88873 0.88921 0.91818 0.94713 0.92381 0.94902 0.89657 0.84568 0.83460 0.90411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -1.74 9.70 71.24 0.69 -1.05 16 2 C -0.10 -4.91 6.98 41.05 0.29 -4.63 16 3 C -0.07 -3.36 6.35 41.55 0.26 -3.09 16 4 C -0.01 -0.38 5.36 29.85 0.16 -0.22 16 5 C -0.10 -3.08 5.46 30.60 0.17 -2.92 16 6 C 0.07 1.61 6.79 86.31 0.59 2.19 16 7 N -0.86 -18.13 9.62 -186.71 -1.80 -19.92 16 8 N -0.37 -21.41 12.33 -48.99 -0.60 -22.02 16 9 N -0.16 -10.17 11.73 37.02 0.43 -9.74 16 10 N -0.17 -9.45 3.78 -178.49 -0.67 -10.12 16 11 C -0.34 -18.01 10.05 83.98 0.84 -17.17 16 12 H 0.14 6.58 7.22 -2.91 -0.02 6.56 16 13 C 0.00 -0.17 5.50 84.96 0.47 0.29 16 14 N -0.81 -46.51 11.89 21.66 0.26 -46.25 16 15 Si 1.03 37.22 29.55 68.60 2.03 39.24 16 16 H -0.24 -7.62 7.11 99.48 0.71 -6.91 16 17 H -0.27 -9.45 7.11 99.48 0.71 -8.75 16 18 H -0.27 -9.51 7.11 99.48 0.71 -8.80 16 19 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 20 H 0.06 2.10 7.51 -2.39 -0.02 2.09 16 21 H 0.09 2.66 7.77 -2.39 -0.02 2.64 16 22 H 0.09 2.67 7.75 -2.39 -0.02 2.65 16 23 H 0.06 2.19 8.14 -2.38 -0.02 2.17 16 24 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 25 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 26 H 0.03 0.71 8.14 -2.39 -0.02 0.69 16 27 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 28 H 0.34 7.03 8.99 -89.70 -0.81 6.23 16 29 H 0.35 5.53 9.08 -89.70 -0.81 4.72 16 30 H 0.29 14.76 8.31 -92.71 -0.77 13.99 16 Total: -1.00 -73.69 261.87 2.65 -71.04 By element: Atomic # 1 Polarization: 24.83 SS G_CDS: -0.46 Total: 24.36 kcal Atomic # 6 Polarization: -30.06 SS G_CDS: 3.46 Total: -26.59 kcal Atomic # 7 Polarization: -105.67 SS G_CDS: -2.38 Total: -108.05 kcal Atomic # 14 Polarization: 37.22 SS G_CDS: 2.03 Total: 39.24 kcal Total: -73.69 2.65 -71.04 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000062296122.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.830 kcal (2) G-P(sol) polarization free energy of solvation -73.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.039 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds