Wall clock time and date at job start Mon Mar 30 2020 02:51:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.35494 * 126.97684 * 2 1 4 4 N 1.30525 * 107.30631 * 180.22739 * 3 2 1 5 5 N 1.28594 * 109.67159 * 359.77260 * 4 3 2 6 6 C 1.30524 * 109.67525 * 0.02562 * 5 4 3 7 7 C 1.50699 * 126.34892 * 179.97438 * 6 5 4 8 8 C 1.53006 * 109.46866 * 90.02315 * 7 6 5 9 9 N 1.46902 * 109.46626 * 180.02562 * 8 7 6 10 10 C 1.46905 * 110.99800 * 179.97438 * 9 8 7 11 11 C 1.50698 * 109.47191 * 179.97438 * 10 9 8 12 12 H 1.07996 * 119.99685 * 0.02562 * 11 10 9 13 13 C 1.37874 * 120.00015 * 179.97438 * 11 10 9 14 14 N 1.31517 * 119.99869 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 120.00089 * 180.02562 * 13 11 10 16 16 H 1.48502 * 109.46819 * 90.00316 * 15 13 11 17 17 H 1.48501 * 109.47241 * 209.99911 * 15 13 11 18 18 H 1.48500 * 109.47005 * 330.00172 * 15 13 11 19 19 H 1.09004 * 109.46575 * 270.15268 * 1 2 3 20 20 H 1.08998 * 109.47449 * 30.15263 * 1 2 3 21 21 H 1.08997 * 109.47060 * 150.15619 * 1 2 3 22 22 H 1.07997 * 126.35018 * 0.02562 * 3 2 1 23 23 H 1.08993 * 109.47512 * 330.02437 * 7 6 5 24 24 H 1.09000 * 109.47247 * 210.02146 * 7 6 5 25 25 H 1.09000 * 109.47050 * 299.99952 * 8 7 6 26 26 H 1.09001 * 109.46801 * 60.00064 * 8 7 6 27 27 H 1.00891 * 111.00138 * 56.04633 * 9 8 7 28 28 H 1.08993 * 109.47004 * 300.00108 * 10 9 8 29 29 H 1.09002 * 109.47091 * 59.99861 * 10 9 8 30 30 H 0.97003 * 120.00178 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2800 1.0824 0.0000 4 7 3.5091 0.6431 -0.0049 5 7 3.5091 -0.6429 -0.0032 6 6 2.2801 -1.0824 0.0024 7 6 1.8478 -2.5260 0.0055 8 6 1.7070 -3.0130 1.4492 9 7 1.2861 -4.4204 1.4522 10 6 1.1409 -4.9235 2.8248 11 6 0.7086 -6.3667 2.7877 12 1 0.5573 -6.8608 1.8394 13 6 0.5073 -7.0564 3.9644 14 7 0.6921 -6.4547 5.1192 15 14 -0.0280 -8.8455 3.9185 16 1 1.1716 -9.7207 3.9008 17 1 -0.8443 -9.1490 5.1213 18 1 -0.8366 -9.0891 2.6971 19 1 -0.3632 0.0027 1.0277 20 1 -0.3634 0.8886 -0.5162 21 1 -0.3633 -0.8914 -0.5114 22 1 1.9702 2.1170 0.0004 23 1 2.5941 -3.1299 -0.5105 24 1 0.8890 -2.6193 -0.5045 25 1 2.6658 -2.9197 1.9592 26 1 0.9606 -2.4090 1.9652 27 1 1.9292 -4.9913 0.9244 28 1 2.0958 -4.8431 3.3441 29 1 0.3906 -4.3332 3.3506 30 1 0.5501 -6.9399 5.9471 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000070960677.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:47 Heat of formation + Delta-G solvation = 72.163807 kcal Electronic energy + Delta-G solvation = -13217.274808 eV Core-core repulsion = 10855.862275 eV Total energy + Delta-G solvation = -2361.412533 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.118 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -43.08507 -36.07035 -35.01637 -33.08110 -31.66671 -28.82116 -27.71663 -26.05116 -22.79815 -22.36154 -21.35208 -20.49834 -17.13720 -16.59525 -16.18144 -15.49972 -14.81753 -14.77601 -14.19778 -13.65337 -13.40282 -13.14594 -12.41429 -12.36816 -11.95869 -11.48738 -11.19496 -10.98042 -10.72085 -10.66441 -10.30096 -10.23168 -9.98185 -9.30094 -9.06677 -8.51679 -7.41311 -6.06100 -4.08678 1.79979 2.44536 2.91613 3.30548 3.36531 3.40621 4.28317 4.41793 4.47047 4.52402 4.85599 4.97485 5.17106 5.28679 5.30085 5.45542 5.68353 5.71385 5.81912 6.13771 6.26965 6.32744 6.81197 7.17592 7.37005 7.72959 8.07108 8.29854 8.53194 8.76318 9.00280 9.56499 11.05071 Molecular weight = 210.12amu Principal moments of inertia in cm(-1) A = 0.069219 B = 0.005147 C = 0.005088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 404.416104 B = 5438.625858 C = 5501.847542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.476 5.476 3 C 0.139 3.861 4 N -0.301 5.301 5 N -0.298 5.298 6 C 0.191 3.809 7 C -0.033 4.033 8 C 0.066 3.934 9 N -0.689 5.689 10 C 0.194 3.806 11 C -0.516 4.516 12 H 0.063 0.937 13 C 0.056 3.944 14 N -0.898 5.898 15 Si 0.900 3.100 16 H -0.280 1.280 17 H -0.287 1.287 18 H -0.273 1.273 19 H 0.085 0.915 20 H 0.090 0.910 21 H 0.095 0.905 22 H 0.216 0.784 23 H 0.097 0.903 24 H 0.089 0.911 25 H 0.028 0.972 26 H 0.061 0.939 27 H 0.332 0.668 28 H -0.012 1.012 29 H 0.027 0.973 30 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.646 12.520 -10.072 16.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.167 5.167 3 C -0.149 4.149 4 N -0.140 5.140 5 N -0.138 5.138 6 C -0.077 4.077 7 C -0.073 4.073 8 C -0.065 4.065 9 N -0.320 5.320 10 C 0.067 3.933 11 C -0.554 4.554 12 H 0.082 0.918 13 C -0.146 4.146 14 N -0.537 5.537 15 Si 0.728 3.272 16 H -0.207 1.207 17 H -0.212 1.212 18 H -0.197 1.197 19 H 0.104 0.896 20 H 0.109 0.891 21 H 0.114 0.886 22 H 0.232 0.768 23 H 0.115 0.885 24 H 0.107 0.893 25 H 0.046 0.954 26 H 0.080 0.920 27 H 0.148 0.852 28 H 0.006 0.994 29 H 0.045 0.955 30 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -1.840 12.661 -9.942 16.203 hybrid contribution -0.893 -0.784 0.492 1.286 sum -2.733 11.876 -9.450 15.421 Atomic orbital electron populations 1.22152 0.75201 1.05209 1.04634 1.46223 1.09333 1.06807 1.54383 1.26365 0.87399 0.94875 1.06258 1.74216 1.18174 1.03587 1.18011 1.74280 1.17249 1.02963 1.19298 1.25049 0.87079 0.92624 1.02911 1.20131 1.02674 0.84561 0.99975 1.21774 0.98903 0.92871 0.92950 1.60712 1.52413 1.00066 1.18806 1.19561 0.95556 0.95410 0.82745 1.21169 1.45827 0.95689 0.92745 0.91844 1.24999 0.95569 0.98662 0.95350 1.69967 1.49539 1.36888 0.97336 0.86463 0.78607 0.84581 0.77547 1.20656 1.21243 1.19742 0.89635 0.89148 0.88617 0.76757 0.88480 0.89286 0.95357 0.92017 0.85194 0.99369 0.95474 0.92854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.48 11.04 59.85 0.66 1.15 16 2 N -0.48 -5.40 3.15 -122.68 -0.39 -5.78 16 3 C 0.14 1.60 12.74 -89.94 -1.15 0.45 16 4 N -0.30 -4.83 12.21 29.69 0.36 -4.47 16 5 N -0.30 -5.19 12.21 32.80 0.40 -4.79 16 6 C 0.19 2.78 7.28 -154.98 -1.13 1.65 16 7 C -0.03 -0.46 5.83 -27.88 -0.16 -0.62 16 8 C 0.07 1.15 5.67 -3.82 -0.02 1.13 16 9 N -0.69 -14.25 6.49 -115.05 -0.75 -14.99 16 10 C 0.19 5.04 5.44 -4.97 -0.03 5.02 16 11 C -0.52 -14.46 9.32 -34.44 -0.32 -14.79 16 12 H 0.06 1.73 7.81 -52.49 -0.41 1.32 16 13 C 0.06 1.58 5.46 -17.82 -0.10 1.49 16 14 N -0.90 -26.80 13.29 55.43 0.74 -26.07 16 15 Si 0.90 21.47 29.54 -169.99 -5.02 16.45 16 16 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 17 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 18 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 19 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 20 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 21 H 0.10 0.61 7.19 -51.93 -0.37 0.24 16 22 H 0.22 1.39 8.06 -52.49 -0.42 0.97 16 23 H 0.10 1.31 8.14 -51.93 -0.42 0.89 16 24 H 0.09 1.06 7.21 -51.93 -0.37 0.68 16 25 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 27 H 0.33 6.51 8.72 -39.30 -0.34 6.16 16 28 H -0.01 -0.32 8.14 -51.93 -0.42 -0.75 16 29 H 0.03 0.76 8.14 -51.93 -0.42 0.33 16 30 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 LS Contribution 265.29 15.07 4.00 4.00 Total: -1.00 -34.08 265.29 -6.92 -41.00 By element: Atomic # 1 Polarization: 3.19 SS G_CDS: -4.02 Total: -0.83 kcal Atomic # 6 Polarization: -2.28 SS G_CDS: -2.24 Total: -4.52 kcal Atomic # 7 Polarization: -56.47 SS G_CDS: 0.37 Total: -56.10 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 4.00 Total: 4.00 kcal Total: -34.08 -6.92 -41.00 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070960677.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.165 kcal (2) G-P(sol) polarization free energy of solvation -34.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.001 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds