Wall clock time and date at job start Mon Mar 30 2020 02:51:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.35494 * 126.97684 * 2 1 4 4 N 1.30525 * 107.30631 * 180.22739 * 3 2 1 5 5 N 1.28594 * 109.67159 * 359.77260 * 4 3 2 6 6 C 1.30524 * 109.67525 * 0.02562 * 5 4 3 7 7 C 1.50699 * 126.34892 * 179.97438 * 6 5 4 8 8 C 1.53006 * 109.46866 * 90.02315 * 7 6 5 9 9 N 1.46902 * 109.46626 * 180.02562 * 8 7 6 10 10 C 1.46905 * 110.99800 * 179.97438 * 9 8 7 11 11 C 1.50698 * 109.47191 * 179.97438 * 10 9 8 12 12 H 1.07996 * 119.99685 * 0.02562 * 11 10 9 13 13 C 1.37874 * 120.00015 * 179.97438 * 11 10 9 14 14 N 1.31517 * 119.99869 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 120.00089 * 180.02562 * 13 11 10 16 16 H 1.48502 * 109.46819 * 90.00316 * 15 13 11 17 17 H 1.48501 * 109.47241 * 209.99911 * 15 13 11 18 18 H 1.48500 * 109.47005 * 330.00172 * 15 13 11 19 19 H 1.09004 * 109.46575 * 270.15268 * 1 2 3 20 20 H 1.08998 * 109.47449 * 30.15263 * 1 2 3 21 21 H 1.08997 * 109.47060 * 150.15619 * 1 2 3 22 22 H 1.07997 * 126.35018 * 0.02562 * 3 2 1 23 23 H 1.08993 * 109.47512 * 330.02437 * 7 6 5 24 24 H 1.09000 * 109.47247 * 210.02146 * 7 6 5 25 25 H 1.09000 * 109.47050 * 299.99952 * 8 7 6 26 26 H 1.09001 * 109.46801 * 60.00064 * 8 7 6 27 27 H 1.00891 * 111.00138 * 56.04633 * 9 8 7 28 28 H 1.08993 * 109.47004 * 300.00108 * 10 9 8 29 29 H 1.09002 * 109.47091 * 59.99861 * 10 9 8 30 30 H 0.97003 * 120.00178 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2800 1.0824 0.0000 4 7 3.5091 0.6431 -0.0049 5 7 3.5091 -0.6429 -0.0032 6 6 2.2801 -1.0824 0.0024 7 6 1.8478 -2.5260 0.0055 8 6 1.7070 -3.0130 1.4492 9 7 1.2861 -4.4204 1.4522 10 6 1.1409 -4.9235 2.8248 11 6 0.7086 -6.3667 2.7877 12 1 0.5573 -6.8608 1.8394 13 6 0.5073 -7.0564 3.9644 14 7 0.6921 -6.4547 5.1192 15 14 -0.0280 -8.8455 3.9185 16 1 1.1716 -9.7207 3.9008 17 1 -0.8443 -9.1490 5.1213 18 1 -0.8366 -9.0891 2.6971 19 1 -0.3632 0.0027 1.0277 20 1 -0.3634 0.8886 -0.5162 21 1 -0.3633 -0.8914 -0.5114 22 1 1.9702 2.1170 0.0004 23 1 2.5941 -3.1299 -0.5105 24 1 0.8890 -2.6193 -0.5045 25 1 2.6658 -2.9197 1.9592 26 1 0.9606 -2.4090 1.9652 27 1 1.9292 -4.9913 0.9244 28 1 2.0958 -4.8431 3.3441 29 1 0.3906 -4.3332 3.3506 30 1 0.5501 -6.9399 5.9471 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000070960677.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:47 Heat of formation + Delta-G solvation = 48.381377 kcal Electronic energy + Delta-G solvation = -13218.306092 eV Core-core repulsion = 10855.862275 eV Total energy + Delta-G solvation = -2362.443817 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.118 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -44.08939 -37.66348 -35.99229 -34.93796 -33.21598 -30.24601 -28.49126 -27.81274 -24.44450 -23.31165 -23.18191 -21.57112 -18.58885 -17.98614 -17.30765 -16.88681 -16.54327 -16.04423 -15.60057 -15.01632 -14.32092 -14.28071 -14.13883 -13.76802 -13.41908 -12.93103 -12.68501 -12.59737 -12.47762 -12.25027 -12.00081 -11.35054 -11.32084 -11.09429 -10.66733 -10.23992 -9.23291 -8.22742 -6.34420 0.83915 1.43614 1.45064 1.56903 1.63360 1.84953 2.41042 3.11234 3.17593 3.66520 3.88074 3.91432 3.96193 4.17104 4.38407 4.42345 4.51004 4.70638 4.79087 4.94968 5.03802 5.11629 5.17304 5.25273 5.60413 5.97153 5.98936 6.36213 6.66411 6.86867 7.36967 7.72397 8.89211 Molecular weight = 210.12amu Principal moments of inertia in cm(-1) A = 0.069219 B = 0.005147 C = 0.005088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 404.416104 B = 5438.625858 C = 5501.847542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.062 3.938 2 N -0.472 5.472 3 C 0.161 3.839 4 N -0.353 5.353 5 N -0.344 5.344 6 C 0.179 3.821 7 C -0.017 4.017 8 C 0.074 3.926 9 N -0.679 5.679 10 C 0.207 3.793 11 C -0.535 4.535 12 H 0.070 0.930 13 C 0.000 4.000 14 N -0.937 5.937 15 Si 0.976 3.024 16 H -0.273 1.273 17 H -0.283 1.283 18 H -0.261 1.261 19 H 0.088 0.912 20 H 0.127 0.873 21 H 0.101 0.899 22 H 0.265 0.735 23 H 0.099 0.901 24 H 0.115 0.885 25 H 0.006 0.994 26 H 0.061 0.939 27 H 0.340 0.660 28 H -0.043 1.043 29 H 0.003 0.997 30 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.229 12.666 -11.349 17.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 N -0.162 5.162 3 C -0.127 4.127 4 N -0.191 5.191 5 N -0.184 5.184 6 C -0.091 4.091 7 C -0.057 4.057 8 C -0.057 4.057 9 N -0.310 5.310 10 C 0.079 3.921 11 C -0.573 4.573 12 H 0.088 0.912 13 C -0.198 4.198 14 N -0.577 5.577 15 Si 0.800 3.200 16 H -0.199 1.199 17 H -0.208 1.208 18 H -0.185 1.185 19 H 0.107 0.893 20 H 0.146 0.854 21 H 0.120 0.880 22 H 0.281 0.719 23 H 0.117 0.883 24 H 0.133 0.867 25 H 0.024 0.976 26 H 0.079 0.921 27 H 0.157 0.843 28 H -0.026 1.026 29 H 0.021 0.979 30 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -3.432 12.820 -11.248 17.397 hybrid contribution -0.432 -0.704 0.889 1.214 sum -3.865 12.116 -10.359 16.402 Atomic orbital electron populations 1.22541 0.72361 1.07451 1.05545 1.46471 1.10905 1.05723 1.53074 1.27277 0.86194 0.96624 1.02613 1.74109 1.20961 1.03279 1.20793 1.74163 1.19275 1.04093 1.20881 1.24972 0.87163 0.93406 1.03548 1.19930 1.04119 0.84477 0.97196 1.21727 0.97499 0.90910 0.95598 1.60573 1.53034 1.01756 1.15634 1.19225 0.93040 0.94906 0.84959 1.21552 1.45923 0.96635 0.93224 0.91177 1.25992 0.95337 1.03681 0.94817 1.70103 1.50458 1.38997 0.98154 0.85286 0.78391 0.78380 0.77958 1.19872 1.20842 1.18453 0.89322 0.85429 0.88016 0.71908 0.88295 0.86707 0.97609 0.92055 0.84312 1.02567 0.97922 0.92620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.63 11.04 127.77 1.41 2.05 16 2 N -0.47 -9.59 3.15 -542.06 -1.71 -11.30 16 3 C 0.16 3.33 12.74 180.11 2.30 5.63 16 4 N -0.35 -11.17 12.21 -59.99 -0.73 -11.90 16 5 N -0.34 -12.07 12.21 -50.15 -0.61 -12.68 16 6 C 0.18 5.04 7.28 137.98 1.01 6.05 16 7 C -0.02 -0.46 5.83 29.85 0.17 -0.29 16 8 C 0.07 2.57 5.67 86.31 0.49 3.06 16 9 N -0.68 -28.09 6.49 -517.91 -3.36 -31.45 16 10 C 0.21 11.03 5.44 85.56 0.47 11.49 16 11 C -0.54 -30.11 9.32 25.60 0.24 -29.87 16 12 H 0.07 3.77 7.81 -2.91 -0.02 3.75 16 13 C 0.00 -0.01 5.46 84.65 0.46 0.45 16 14 N -0.94 -56.68 13.29 21.45 0.28 -56.40 16 15 Si 0.98 43.67 29.54 68.60 2.03 45.70 16 16 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 17 H -0.28 -12.40 7.11 99.48 0.71 -11.70 16 18 H -0.26 -11.07 7.11 99.48 0.71 -10.36 16 19 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 20 H 0.13 0.39 8.14 -2.39 -0.02 0.37 16 21 H 0.10 0.96 7.19 -2.39 -0.02 0.94 16 22 H 0.27 2.29 8.06 -2.91 -0.02 2.27 16 23 H 0.10 2.59 8.14 -2.39 -0.02 2.57 16 24 H 0.11 2.44 7.21 -2.39 -0.02 2.42 16 25 H 0.01 0.22 8.14 -2.39 -0.02 0.20 16 26 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 27 H 0.34 13.22 8.72 -89.70 -0.78 12.44 16 28 H -0.04 -2.55 8.14 -2.39 -0.02 -2.57 16 29 H 0.00 0.15 8.14 -2.39 -0.02 0.13 16 30 H 0.27 15.03 8.31 -92.71 -0.77 14.26 16 Total: -1.00 -75.68 265.29 2.79 -72.89 By element: Atomic # 1 Polarization: 6.23 SS G_CDS: 0.35 Total: 6.58 kcal Atomic # 6 Polarization: -7.98 SS G_CDS: 6.54 Total: -1.44 kcal Atomic # 7 Polarization: -117.60 SS G_CDS: -6.13 Total: -123.73 kcal Atomic # 14 Polarization: 43.67 SS G_CDS: 2.03 Total: 45.70 kcal Total: -75.68 2.79 -72.89 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070960677.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.272 kcal (2) G-P(sol) polarization free energy of solvation -75.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.890 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds