Wall clock time and date at job start Mon Mar 30 2020 02:34:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46892 * 1 3 3 C 1.46895 * 111.00489 * 2 1 4 4 C 1.46904 * 110.99891 * 123.95708 * 2 1 3 5 5 C 1.52997 * 109.47581 * 66.04022 * 4 2 1 6 6 C 1.50694 * 109.47394 * 180.02562 * 5 4 2 7 7 N 1.33327 * 126.45933 * 90.02547 * 6 5 4 8 8 C 1.30805 * 109.25177 * 179.97438 * 7 6 5 9 9 O 1.34008 * 109.69697 * 0.02562 * 8 7 6 10 10 C 1.35487 * 107.71439 * 359.75024 * 9 8 7 11 11 C 1.39844 * 126.87561 * 180.28107 * 10 9 8 12 12 H 1.07995 * 120.00239 * 174.43575 * 11 10 9 13 13 C 1.40171 * 119.99935 * 354.43658 * 11 10 9 14 14 N 1.30796 * 119.99721 * 6.02260 * 13 11 10 15 15 Si 1.86796 * 119.99964 * 186.02587 * 13 11 10 16 16 H 1.48499 * 109.47291 * 94.98148 * 15 13 11 17 17 H 1.48509 * 109.47043 * 214.98277 * 15 13 11 18 18 H 1.48496 * 109.47210 * 334.97659 * 15 13 11 19 19 H 1.08993 * 109.47506 * 296.04928 * 1 2 3 20 20 H 1.08999 * 109.47169 * 56.05039 * 1 2 3 21 21 H 1.09005 * 109.47500 * 176.04771 * 1 2 3 22 22 H 1.09002 * 109.47513 * 183.95432 * 3 2 1 23 23 H 1.09005 * 109.46653 * 303.95429 * 3 2 1 24 24 H 1.08997 * 109.47346 * 63.95035 * 3 2 1 25 25 H 1.09002 * 109.46705 * 306.04235 * 4 2 1 26 26 H 1.09002 * 109.47314 * 186.04627 * 4 2 1 27 27 H 1.09002 * 109.46927 * 60.00349 * 5 4 2 28 28 H 1.09002 * 109.47290 * 300.00620 * 5 4 2 29 29 H 1.08004 * 125.14813 * 180.02562 * 8 7 6 30 30 H 0.96998 * 119.99843 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9955 1.3713 0.0000 4 6 1.9954 -0.7661 1.1376 5 6 1.6313 -2.2427 0.9704 6 6 2.1708 -3.0284 2.1377 7 7 1.5392 -3.2767 3.2853 8 6 2.3166 -3.9881 4.0603 9 8 3.4802 -4.2240 3.4388 10 6 3.4225 -3.6371 2.2191 11 6 4.4196 -3.6397 1.2385 12 1 4.2226 -3.2115 0.2669 13 6 5.6748 -4.1981 1.5169 14 7 5.8769 -4.8209 2.6491 15 14 7.0588 -4.0527 0.2708 16 1 7.9024 -2.8766 0.6029 17 1 7.8890 -5.2835 0.3072 18 1 6.4853 -3.8827 -1.0884 19 1 -0.3634 0.4513 0.9232 20 1 -0.3633 0.5739 -0.8525 21 1 -0.3634 -1.0252 -0.0708 22 1 3.0828 1.3431 -0.0709 23 1 1.5898 1.9162 -0.8525 24 1 1.7044 1.8723 0.9232 25 1 1.5610 -0.3873 2.0628 26 1 3.0796 -0.6612 1.1757 27 1 2.0656 -2.6215 0.0452 28 1 0.5470 -2.3475 0.9323 29 1 2.0595 -4.3331 5.0509 30 1 6.7454 -5.2076 2.8416 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075600753.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:07 Heat of formation + Delta-G solvation = 0.545652 kcal Electronic energy + Delta-G solvation = -13806.135147 eV Core-core repulsion = 11409.324267 eV Total energy + Delta-G solvation = -2396.810880 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.111 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.88537 -37.14033 -33.85534 -33.20923 -30.71270 -28.57826 -27.26862 -25.27893 -23.56695 -20.90228 -20.70436 -19.06862 -17.36598 -15.64402 -15.16935 -14.92133 -14.70229 -14.33400 -14.08389 -13.37499 -13.14808 -12.28077 -12.11442 -11.87733 -11.48140 -11.42983 -11.23335 -11.11129 -10.95110 -10.61923 -10.40855 -9.94793 -9.63572 -9.23987 -8.75541 -7.97665 -7.38229 -6.96847 -4.53568 2.81999 2.99232 3.04810 3.47142 3.79971 4.18917 4.45831 4.94769 5.08202 5.43965 5.53744 5.67009 5.77293 5.86827 6.02992 6.06195 6.17584 6.23069 6.45623 6.58106 6.89017 6.91350 7.05213 7.27016 7.46705 7.48650 7.65905 8.11993 8.29086 8.52036 8.58050 9.72269 10.02423 Molecular weight = 210.11amu Principal moments of inertia in cm(-1) A = 0.026298 B = 0.010562 C = 0.007939 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1064.483328 B = 2650.301253 C = 3526.228491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.550 5.550 3 C 0.026 3.974 4 C 0.063 3.937 5 C 0.014 3.986 6 C -0.211 4.211 7 N -0.460 5.460 8 C -0.002 4.002 9 O -0.194 6.194 10 C 0.185 3.815 11 C -0.429 4.429 12 H 0.109 0.891 13 C 0.066 3.934 14 N -0.772 5.772 15 Si 0.923 3.077 16 H -0.266 1.266 17 H -0.274 1.274 18 H -0.256 1.256 19 H 0.020 0.980 20 H 0.059 0.941 21 H 0.072 0.928 22 H 0.067 0.933 23 H 0.061 0.939 24 H 0.019 0.981 25 H 0.028 0.972 26 H 0.074 0.926 27 H 0.065 0.935 28 H 0.049 0.951 29 H 0.206 0.794 30 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.909 5.757 -3.984 7.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.274 5.274 3 C -0.122 4.122 4 C -0.065 4.065 5 C -0.024 4.024 6 C -0.337 4.337 7 N -0.188 5.188 8 C -0.222 4.222 9 O -0.082 6.082 10 C 0.129 3.871 11 C -0.458 4.458 12 H 0.127 0.873 13 C -0.156 4.156 14 N -0.398 5.398 15 Si 0.747 3.253 16 H -0.191 1.191 17 H -0.199 1.199 18 H -0.180 1.180 19 H 0.039 0.961 20 H 0.078 0.922 21 H 0.091 0.909 22 H 0.085 0.915 23 H 0.080 0.920 24 H 0.038 0.962 25 H 0.046 0.954 26 H 0.092 0.908 27 H 0.084 0.916 28 H 0.068 0.932 29 H 0.222 0.778 30 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -2.193 5.554 -4.019 7.197 hybrid contribution 1.035 0.153 0.396 1.119 sum -1.157 5.707 -3.622 6.858 Atomic orbital electron populations 1.22389 0.88140 1.02393 0.99517 1.62040 1.07545 1.13058 1.44710 1.22339 1.00817 0.89440 0.99646 1.22256 1.00076 0.94596 0.89569 1.19127 0.98385 0.90743 0.94186 1.21067 0.95800 1.19071 0.97783 1.69266 1.33098 1.13124 1.03325 1.26465 0.83895 1.10510 1.01366 1.84763 1.36003 1.61173 1.26229 1.20364 0.94041 0.89826 0.82877 1.18781 0.93938 1.34529 0.98590 0.87334 1.26194 1.00525 0.92609 0.96258 1.69786 1.24728 1.23358 1.21897 0.86022 0.79602 0.78746 0.80947 1.19144 1.19939 1.17952 0.96108 0.92217 0.90938 0.91463 0.92021 0.96213 0.95413 0.90757 0.91604 0.93217 0.77795 0.90355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.35 9.32 60.06 0.56 0.91 16 2 N -0.55 -9.19 5.02 -251.27 -1.26 -10.45 16 3 C 0.03 0.36 9.57 60.06 0.57 0.94 16 4 C 0.06 1.23 4.94 -3.82 -0.02 1.21 16 5 C 0.01 0.31 5.50 -27.89 -0.15 0.15 16 6 C -0.21 -5.48 6.52 -81.50 -0.53 -6.02 16 7 N -0.46 -12.02 11.23 -10.12 -0.11 -12.13 16 8 C 0.00 -0.04 13.18 52.33 0.69 0.65 16 9 O -0.19 -5.48 9.19 3.10 0.03 -5.45 16 10 C 0.18 5.12 6.83 -38.54 -0.26 4.85 16 11 C -0.43 -11.25 9.09 -38.26 -0.35 -11.60 16 12 H 0.11 2.67 7.31 -52.49 -0.38 2.28 16 13 C 0.07 1.63 5.49 -17.27 -0.09 1.54 16 14 N -0.77 -20.22 12.08 55.56 0.67 -19.55 16 15 Si 0.92 18.19 29.57 -169.99 -5.03 13.16 16 16 H -0.27 -5.17 7.11 56.52 0.40 -4.77 16 17 H -0.27 -5.27 7.11 56.52 0.40 -4.87 16 18 H -0.26 -4.92 7.11 56.52 0.40 -4.51 16 19 H 0.02 0.30 8.14 -51.93 -0.42 -0.12 16 20 H 0.06 0.73 8.12 -51.93 -0.42 0.31 16 21 H 0.07 1.09 6.47 -51.93 -0.34 0.75 16 22 H 0.07 0.92 8.12 -51.93 -0.42 0.50 16 23 H 0.06 0.73 8.12 -51.93 -0.42 0.31 16 24 H 0.02 0.27 8.14 -51.93 -0.42 -0.16 16 25 H 0.03 0.57 8.12 -51.93 -0.42 0.15 16 26 H 0.07 1.54 8.06 -51.93 -0.42 1.12 16 27 H 0.07 1.43 7.55 -51.93 -0.39 1.04 16 28 H 0.05 1.04 6.55 -51.93 -0.34 0.70 16 29 H 0.21 4.17 8.06 -52.48 -0.42 3.75 16 30 H 0.29 6.70 8.30 -40.82 -0.34 6.36 16 LS Contribution 259.91 15.07 3.92 3.92 Total: -1.00 -29.71 259.91 -5.33 -35.03 By element: Atomic # 1 Polarization: 6.79 SS G_CDS: -3.96 Total: 2.84 kcal Atomic # 6 Polarization: -7.78 SS G_CDS: 0.42 Total: -7.36 kcal Atomic # 7 Polarization: -41.43 SS G_CDS: -0.70 Total: -42.14 kcal Atomic # 8 Polarization: -5.48 SS G_CDS: 0.03 Total: -5.45 kcal Atomic # 14 Polarization: 18.19 SS G_CDS: -5.03 Total: 13.16 kcal Total LS contribution 3.92 Total: 3.92 kcal Total: -29.71 -5.33 -35.03 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075600753.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.580 kcal (2) G-P(sol) polarization free energy of solvation -29.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.035 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds