Wall clock time and date at job start Mon Mar 30 2020 02:34:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46892 * 1 3 3 C 1.46895 * 111.00489 * 2 1 4 4 C 1.46904 * 110.99891 * 123.95708 * 2 1 3 5 5 C 1.52997 * 109.47581 * 66.04022 * 4 2 1 6 6 C 1.50694 * 109.47394 * 180.02562 * 5 4 2 7 7 N 1.33327 * 126.45933 * 90.02547 * 6 5 4 8 8 C 1.30805 * 109.25177 * 179.97438 * 7 6 5 9 9 O 1.34008 * 109.69697 * 0.02562 * 8 7 6 10 10 C 1.35487 * 107.71439 * 359.75024 * 9 8 7 11 11 C 1.39844 * 126.87561 * 180.28107 * 10 9 8 12 12 H 1.07995 * 120.00239 * 174.43575 * 11 10 9 13 13 C 1.40171 * 119.99935 * 354.43658 * 11 10 9 14 14 N 1.30796 * 119.99721 * 6.02260 * 13 11 10 15 15 Si 1.86796 * 119.99964 * 186.02587 * 13 11 10 16 16 H 1.48499 * 109.47291 * 94.98148 * 15 13 11 17 17 H 1.48509 * 109.47043 * 214.98277 * 15 13 11 18 18 H 1.48496 * 109.47210 * 334.97659 * 15 13 11 19 19 H 1.08993 * 109.47506 * 296.04928 * 1 2 3 20 20 H 1.08999 * 109.47169 * 56.05039 * 1 2 3 21 21 H 1.09005 * 109.47500 * 176.04771 * 1 2 3 22 22 H 1.09002 * 109.47513 * 183.95432 * 3 2 1 23 23 H 1.09005 * 109.46653 * 303.95429 * 3 2 1 24 24 H 1.08997 * 109.47346 * 63.95035 * 3 2 1 25 25 H 1.09002 * 109.46705 * 306.04235 * 4 2 1 26 26 H 1.09002 * 109.47314 * 186.04627 * 4 2 1 27 27 H 1.09002 * 109.46927 * 60.00349 * 5 4 2 28 28 H 1.09002 * 109.47290 * 300.00620 * 5 4 2 29 29 H 1.08004 * 125.14813 * 180.02562 * 8 7 6 30 30 H 0.96998 * 119.99843 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9955 1.3713 0.0000 4 6 1.9954 -0.7661 1.1376 5 6 1.6313 -2.2427 0.9704 6 6 2.1708 -3.0284 2.1377 7 7 1.5392 -3.2767 3.2853 8 6 2.3166 -3.9881 4.0603 9 8 3.4802 -4.2240 3.4388 10 6 3.4225 -3.6371 2.2191 11 6 4.4196 -3.6397 1.2385 12 1 4.2226 -3.2115 0.2669 13 6 5.6748 -4.1981 1.5169 14 7 5.8769 -4.8209 2.6491 15 14 7.0588 -4.0527 0.2708 16 1 7.9024 -2.8766 0.6029 17 1 7.8890 -5.2835 0.3072 18 1 6.4853 -3.8827 -1.0884 19 1 -0.3634 0.4513 0.9232 20 1 -0.3633 0.5739 -0.8525 21 1 -0.3634 -1.0252 -0.0708 22 1 3.0828 1.3431 -0.0709 23 1 1.5898 1.9162 -0.8525 24 1 1.7044 1.8723 0.9232 25 1 1.5610 -0.3873 2.0628 26 1 3.0796 -0.6612 1.1757 27 1 2.0656 -2.6215 0.0452 28 1 0.5470 -2.3475 0.9323 29 1 2.0595 -4.3331 5.0509 30 1 6.7454 -5.2076 2.8416 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000075600753.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:07 Heat of formation + Delta-G solvation = -21.906403 kcal Electronic energy + Delta-G solvation = -13807.108741 eV Core-core repulsion = 11409.324267 eV Total energy + Delta-G solvation = -2397.784475 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.111 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -42.91236 -38.51719 -35.78117 -35.13855 -32.53989 -30.42095 -28.42903 -27.08934 -25.19092 -22.88255 -22.20535 -20.98023 -19.35597 -17.49643 -16.80754 -16.53871 -16.34979 -16.00124 -15.49256 -15.16895 -14.79207 -13.91764 -13.56501 -13.27326 -13.14311 -12.98085 -12.71292 -12.67949 -12.49325 -12.28462 -12.01750 -11.68650 -11.45999 -11.19612 -10.78143 -9.42426 -9.27124 -8.84217 -6.52700 1.10061 1.38495 1.56016 1.67446 2.15449 2.27738 2.98233 3.02783 3.20947 3.99554 4.22212 4.30352 4.36605 4.54396 4.69329 4.71288 4.79113 4.82273 4.99424 5.01279 5.05647 5.20787 5.25167 5.41441 5.67769 6.07826 6.13197 6.18760 6.35078 6.53016 6.61642 7.69645 8.18080 Molecular weight = 210.11amu Principal moments of inertia in cm(-1) A = 0.026298 B = 0.010562 C = 0.007939 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1064.483328 B = 2650.301253 C = 3526.228491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.558 5.558 3 C 0.025 3.975 4 C 0.079 3.921 5 C 0.021 3.979 6 C -0.225 4.225 7 N -0.475 5.475 8 C -0.007 4.007 9 O -0.218 6.218 10 C 0.147 3.853 11 C -0.451 4.451 12 H 0.117 0.883 13 C 0.021 3.979 14 N -0.810 5.810 15 Si 1.003 2.997 16 H -0.259 1.259 17 H -0.265 1.265 18 H -0.247 1.247 19 H 0.020 0.980 20 H 0.088 0.912 21 H 0.064 0.936 22 H 0.066 0.934 23 H 0.088 0.912 24 H 0.022 0.978 25 H 0.013 0.987 26 H 0.059 0.941 27 H 0.063 0.937 28 H 0.055 0.945 29 H 0.245 0.755 30 H 0.296 0.704 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.474 6.602 -5.314 8.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 N -0.282 5.282 3 C -0.123 4.123 4 C -0.049 4.049 5 C -0.018 4.018 6 C -0.351 4.351 7 N -0.203 5.203 8 C -0.227 4.227 9 O -0.107 6.107 10 C 0.092 3.908 11 C -0.480 4.480 12 H 0.135 0.865 13 C -0.197 4.197 14 N -0.436 5.436 15 Si 0.821 3.179 16 H -0.183 1.183 17 H -0.189 1.189 18 H -0.170 1.170 19 H 0.039 0.961 20 H 0.107 0.893 21 H 0.083 0.917 22 H 0.085 0.915 23 H 0.107 0.893 24 H 0.040 0.960 25 H 0.031 0.969 26 H 0.077 0.923 27 H 0.081 0.919 28 H 0.074 0.926 29 H 0.261 0.739 30 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -1.787 6.412 -5.349 8.539 hybrid contribution 0.831 -0.117 0.871 1.210 sum -0.956 6.295 -4.478 7.784 Atomic orbital electron populations 1.22454 0.86724 1.02504 1.00786 1.62015 1.08910 1.14527 1.42760 1.22431 1.00939 0.87990 1.00966 1.21913 0.99075 0.93695 0.90256 1.19122 0.98451 0.91701 0.92512 1.21653 0.95517 1.19210 0.98683 1.69286 1.33473 1.13813 1.03756 1.27439 0.82988 1.09760 1.02559 1.84731 1.37303 1.61815 1.26858 1.20930 0.95430 0.91045 0.83363 1.19167 0.94792 1.35223 0.98797 0.86488 1.27252 1.02757 0.91359 0.98299 1.69849 1.26065 1.23849 1.23851 0.84855 0.75719 0.79152 0.78130 1.18334 1.18885 1.16957 0.96125 0.89330 0.91730 0.91539 0.89307 0.95965 0.96857 0.92290 0.91859 0.92603 0.73914 0.89361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.63 9.32 127.69 1.19 1.82 16 2 N -0.56 -17.79 5.02 -948.87 -4.76 -22.55 16 3 C 0.02 0.63 9.57 127.69 1.22 1.85 16 4 C 0.08 3.10 4.94 86.30 0.43 3.53 16 5 C 0.02 0.90 5.50 29.85 0.16 1.07 16 6 C -0.23 -11.87 6.52 42.62 0.28 -11.60 16 7 N -0.47 -25.02 11.23 -300.43 -3.37 -28.40 16 8 C -0.01 -0.37 13.18 130.40 1.72 1.35 16 9 O -0.22 -12.57 9.19 -11.81 -0.11 -12.67 16 10 C 0.15 8.33 6.83 22.95 0.16 8.49 16 11 C -0.45 -23.92 9.09 23.13 0.21 -23.71 16 12 H 0.12 5.78 7.31 -2.91 -0.02 5.76 16 13 C 0.02 1.05 5.49 85.32 0.47 1.52 16 14 N -0.81 -42.69 12.08 21.87 0.26 -42.42 16 15 Si 1.00 36.40 29.57 68.60 2.03 38.43 16 16 H -0.26 -9.04 7.11 99.48 0.71 -8.33 16 17 H -0.26 -9.11 7.11 99.48 0.71 -8.40 16 18 H -0.25 -8.50 7.11 99.48 0.71 -7.79 16 19 H 0.02 0.56 8.14 -2.39 -0.02 0.54 16 20 H 0.09 1.90 8.12 -2.39 -0.02 1.88 16 21 H 0.06 1.84 6.47 -2.38 -0.02 1.83 16 22 H 0.07 1.70 8.12 -2.39 -0.02 1.68 16 23 H 0.09 1.81 8.12 -2.38 -0.02 1.79 16 24 H 0.02 0.56 8.14 -2.39 -0.02 0.54 16 25 H 0.01 0.55 8.12 -2.39 -0.02 0.53 16 26 H 0.06 2.47 8.06 -2.39 -0.02 2.45 16 27 H 0.06 2.76 7.55 -2.39 -0.02 2.74 16 28 H 0.06 2.34 6.55 -2.39 -0.02 2.32 16 29 H 0.25 9.71 8.06 -2.91 -0.02 9.68 16 30 H 0.30 13.84 8.30 -92.71 -0.77 13.07 16 Total: -1.00 -64.02 259.91 1.01 -63.02 By element: Atomic # 1 Polarization: 19.16 SS G_CDS: 1.12 Total: 20.28 kcal Atomic # 6 Polarization: -21.51 SS G_CDS: 5.84 Total: -15.68 kcal Atomic # 7 Polarization: -85.50 SS G_CDS: -7.87 Total: -93.38 kcal Atomic # 8 Polarization: -12.57 SS G_CDS: -0.11 Total: -12.67 kcal Atomic # 14 Polarization: 36.40 SS G_CDS: 2.03 Total: 38.43 kcal Total: -64.02 1.01 -63.02 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075600753.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.109 kcal (2) G-P(sol) polarization free energy of solvation -64.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.016 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds