Wall clock time and date at job start Mon Mar 30 2020 02:56:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86801 * 120.00417 * 2 1 4 4 H 1.48499 * 109.47093 * 86.83502 * 3 2 1 5 5 H 1.48504 * 109.47310 * 206.83529 * 3 2 1 6 6 H 1.48504 * 109.46898 * 326.83351 * 3 2 1 7 7 C 1.37883 * 119.99838 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99712 * 3.84133 * 7 2 1 9 9 C 1.50703 * 120.00127 * 183.83127 * 7 2 1 10 10 C 1.52999 * 115.55056 * 272.87623 * 9 7 2 11 11 O 1.42894 * 109.47060 * 294.65708 * 10 9 7 12 12 C 1.42901 * 113.99918 * 184.60186 * 11 10 9 13 13 C 1.54263 * 110.03327 * 270.39224 * 12 11 10 14 14 C 1.54890 * 104.19849 * 217.10228 * 13 12 11 15 15 C 1.54892 * 102.74430 * 37.94858 * 14 13 12 16 16 C 1.53876 * 110.03245 * 153.22921 * 12 11 10 17 17 C 1.53002 * 117.49460 * 127.20415 * 9 7 2 18 18 C 1.52998 * 117.49310 * 58.54611 * 9 7 2 19 19 H 0.96997 * 119.99561 * 359.97438 * 1 2 3 20 20 H 1.08998 * 109.47076 * 54.66304 * 10 9 7 21 21 H 1.09001 * 109.46549 * 174.66199 * 10 9 7 22 22 H 1.08999 * 110.01787 * 31.84224 * 12 11 10 23 23 H 1.08996 * 110.49118 * 335.78911 * 13 12 11 24 24 H 1.09010 * 110.48469 * 98.42784 * 13 12 11 25 25 H 1.08995 * 110.75965 * 279.63484 * 14 13 12 26 26 H 1.09005 * 110.91167 * 156.33041 * 14 13 12 27 27 H 1.09001 * 110.48468 * 203.38175 * 15 14 13 28 28 H 1.08993 * 110.60127 * 80.79117 * 15 14 13 29 29 H 1.09002 * 110.03035 * 238.57175 * 16 12 11 30 30 H 1.09002 * 110.03320 * 359.95110 * 16 12 11 31 31 H 1.08997 * 117.50267 * 0.02562 * 17 9 7 32 32 H 1.08997 * 117.49804 * 145.02813 * 17 9 7 33 33 H 1.09008 * 117.49270 * 214.97677 * 18 9 7 34 34 H 1.09004 * 117.50538 * 359.97438 * 18 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4298 2.0850 1.3979 5 1 3.5787 1.4217 -0.6320 6 1 1.4818 2.6324 -0.7660 7 6 2.0045 -1.1941 0.0005 8 1 1.4662 -2.1284 -0.0617 9 6 3.5090 -1.1956 0.0877 10 6 4.2475 -1.0816 -1.2474 11 8 3.9899 -2.2456 -2.0351 12 6 4.7177 -2.2885 -3.2641 13 6 3.9060 -1.6042 -4.3832 14 6 4.1963 -2.4602 -5.6410 15 6 4.2341 -3.9006 -5.0727 16 6 4.9263 -3.7487 -3.7025 17 6 4.1524 -2.0521 1.1802 18 6 4.1465 -0.5267 1.3072 19 1 -0.4849 0.8401 0.0004 20 1 3.8991 -0.1973 -1.7809 21 1 5.3186 -0.9968 -1.0639 22 1 5.6814 -1.7933 -3.1445 23 1 2.8419 -1.6209 -4.1476 24 1 4.2487 -0.5800 -4.5314 25 1 5.1584 -2.1918 -6.0774 26 1 3.3978 -2.3557 -6.3756 27 1 4.8163 -4.5525 -5.7240 28 1 3.2239 -4.2906 -4.9486 29 1 5.9912 -3.9618 -3.7964 30 1 4.4731 -4.4246 -2.9774 31 1 3.4875 -2.6149 1.8355 32 1 5.1020 -2.5340 0.9479 33 1 5.0923 -0.0057 1.1583 34 1 3.4778 -0.0851 2.0461 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083862451.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:31 Heat of formation + Delta-G solvation = -35.187649 kcal Electronic energy + Delta-G solvation = -14289.528598 eV Core-core repulsion = 11994.708549 eV Total energy + Delta-G solvation = -2294.820049 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.136 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -38.57434 -36.90237 -34.76438 -31.99943 -28.53172 -27.78535 -26.15651 -24.77663 -21.57007 -20.52672 -19.91699 -18.95330 -16.72965 -15.93494 -15.39893 -15.05643 -14.49316 -13.93093 -13.47980 -13.10420 -12.84725 -12.57875 -12.05492 -11.56988 -11.18243 -11.01353 -10.94769 -10.86705 -10.72292 -10.46026 -10.43586 -10.14825 -9.95215 -9.54921 -9.14886 -8.65959 -8.50228 -8.39259 -6.02921 -4.03054 3.31055 3.39886 3.43132 4.26328 4.47040 4.81571 4.84175 5.04294 5.19971 5.25913 5.51039 5.66547 5.74110 5.79392 5.81150 5.96797 6.03517 6.05817 6.09799 6.13329 6.21668 6.32600 6.36203 6.45852 6.51223 6.54471 6.61100 6.78065 7.11320 7.20471 7.81215 8.10309 8.62063 9.03450 9.60281 11.09635 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.033646 B = 0.009771 C = 0.008781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 832.003702 B = 2865.059514 C = 3188.001303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.074 3.926 3 Si 0.877 3.123 4 H -0.279 1.279 5 H -0.261 1.261 6 H -0.293 1.293 7 C -0.472 4.472 8 H 0.079 0.921 9 C 0.002 3.998 10 C 0.101 3.899 11 O -0.357 6.357 12 C 0.081 3.919 13 C -0.150 4.150 14 C -0.122 4.122 15 C -0.122 4.122 16 C -0.121 4.121 17 C -0.174 4.174 18 C -0.198 4.198 19 H 0.263 0.737 20 H 0.044 0.956 21 H 0.019 0.981 22 H 0.051 0.949 23 H 0.084 0.916 24 H 0.060 0.940 25 H 0.062 0.938 26 H 0.065 0.935 27 H 0.061 0.939 28 H 0.068 0.932 29 H 0.064 0.936 30 H 0.079 0.921 31 H 0.087 0.913 32 H 0.071 0.929 33 H 0.070 0.930 34 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.584 -3.095 -7.567 13.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.128 4.128 3 Si 0.705 3.295 4 H -0.205 1.205 5 H -0.185 1.185 6 H -0.220 1.220 7 C -0.509 4.509 8 H 0.097 0.903 9 C 0.001 3.999 10 C 0.025 3.975 11 O -0.276 6.276 12 C 0.022 3.978 13 C -0.188 4.188 14 C -0.160 4.160 15 C -0.159 4.159 16 C -0.159 4.159 17 C -0.211 4.211 18 C -0.235 4.235 19 H 0.073 0.927 20 H 0.062 0.938 21 H 0.038 0.962 22 H 0.069 0.931 23 H 0.102 0.898 24 H 0.079 0.921 25 H 0.080 0.920 26 H 0.083 0.917 27 H 0.080 0.920 28 H 0.087 0.913 29 H 0.083 0.917 30 H 0.097 0.903 31 H 0.105 0.895 32 H 0.090 0.910 33 H 0.089 0.911 34 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 10.285 -3.121 -7.501 13.107 hybrid contribution 0.599 1.287 -0.049 1.421 sum 10.884 -1.834 -7.551 13.373 Atomic orbital electron populations 1.69900 1.06262 1.26830 1.50877 1.24971 0.94587 0.98837 0.94362 0.86896 0.80590 0.83717 0.78283 1.20505 1.18507 1.22027 1.20235 0.86325 0.94525 1.49835 0.90334 1.19315 0.95538 0.99941 0.85121 1.22374 0.95115 0.87455 0.92594 1.88071 1.66478 1.42679 1.30368 1.22684 0.93802 0.95532 0.85784 1.22946 1.02514 0.98499 0.94837 1.22417 1.01020 0.95330 0.97241 1.22317 1.00977 0.96738 0.95897 1.22182 1.00064 0.96422 0.97225 1.22761 1.00996 0.92232 1.05133 1.22990 1.01166 0.95649 1.03731 0.92724 0.93767 0.96242 0.93121 0.89783 0.92099 0.91960 0.91669 0.92036 0.91285 0.91748 0.90268 0.89494 0.91008 0.91101 0.89153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.89 13.96 55.43 0.77 -27.12 16 2 C 0.07 2.16 5.47 -17.82 -0.10 2.06 16 3 Si 0.88 21.93 24.99 -169.99 -4.25 17.68 16 4 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 5 H -0.26 -6.13 5.63 56.52 0.32 -5.81 16 6 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 7 C -0.47 -13.62 9.35 -34.44 -0.32 -13.94 16 8 H 0.08 2.51 8.06 -52.49 -0.42 2.09 16 9 C 0.00 0.04 1.05 -155.66 -0.16 -0.12 16 10 C 0.10 2.24 5.24 37.16 0.19 2.43 16 11 O -0.36 -7.72 9.83 -35.23 -0.35 -8.07 16 12 C 0.08 1.36 3.37 -25.61 -0.09 1.27 16 13 C -0.15 -2.37 6.53 -25.07 -0.16 -2.53 16 14 C -0.12 -1.53 6.91 -24.74 -0.17 -1.70 16 15 C -0.12 -1.52 6.83 -25.07 -0.17 -1.69 16 16 C -0.12 -1.72 6.61 -25.61 -0.17 -1.89 16 17 C -0.17 -3.73 9.96 -26.69 -0.27 -3.99 16 18 C -0.20 -4.32 7.67 -26.69 -0.20 -4.53 16 19 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 20 H 0.04 1.02 6.50 -51.93 -0.34 0.68 16 21 H 0.02 0.39 7.94 -51.93 -0.41 -0.03 16 22 H 0.05 0.79 7.78 -51.93 -0.40 0.39 16 23 H 0.08 1.53 8.08 -51.93 -0.42 1.11 16 24 H 0.06 0.91 8.14 -51.92 -0.42 0.48 16 25 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 26 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 27 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 28 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 29 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 30 H 0.08 1.22 7.95 -51.93 -0.41 0.80 16 31 H 0.09 1.87 8.14 -51.93 -0.42 1.45 16 32 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 33 H 0.07 1.38 8.14 -51.92 -0.42 0.96 16 34 H 0.09 2.05 7.39 -51.93 -0.38 1.66 16 LS Contribution 272.89 15.07 4.11 4.11 Total: -1.00 -30.60 272.89 -7.14 -37.75 By element: Atomic # 1 Polarization: 6.10 SS G_CDS: -5.82 Total: 0.28 kcal Atomic # 6 Polarization: -23.01 SS G_CDS: -1.62 Total: -24.63 kcal Atomic # 7 Polarization: -27.89 SS G_CDS: 0.77 Total: -27.12 kcal Atomic # 8 Polarization: -7.72 SS G_CDS: -0.35 Total: -8.07 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -4.25 Total: 17.68 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -30.60 -7.14 -37.75 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083862451.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.560 kcal (2) G-P(sol) polarization free energy of solvation -30.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.748 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds