Wall clock time and date at job start Mon Mar 30 2020 02:56:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86801 * 120.00417 * 2 1 4 4 H 1.48499 * 109.47093 * 86.83502 * 3 2 1 5 5 H 1.48504 * 109.47310 * 206.83529 * 3 2 1 6 6 H 1.48504 * 109.46898 * 326.83351 * 3 2 1 7 7 C 1.37883 * 119.99838 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99712 * 3.84133 * 7 2 1 9 9 C 1.50703 * 120.00127 * 183.83127 * 7 2 1 10 10 C 1.52999 * 115.55056 * 272.87623 * 9 7 2 11 11 O 1.42894 * 109.47060 * 294.65708 * 10 9 7 12 12 C 1.42901 * 113.99918 * 184.60186 * 11 10 9 13 13 C 1.54263 * 110.03327 * 270.39224 * 12 11 10 14 14 C 1.54890 * 104.19849 * 217.10228 * 13 12 11 15 15 C 1.54892 * 102.74430 * 37.94858 * 14 13 12 16 16 C 1.53876 * 110.03245 * 153.22921 * 12 11 10 17 17 C 1.53002 * 117.49460 * 127.20415 * 9 7 2 18 18 C 1.52998 * 117.49310 * 58.54611 * 9 7 2 19 19 H 0.96997 * 119.99561 * 359.97438 * 1 2 3 20 20 H 1.08998 * 109.47076 * 54.66304 * 10 9 7 21 21 H 1.09001 * 109.46549 * 174.66199 * 10 9 7 22 22 H 1.08999 * 110.01787 * 31.84224 * 12 11 10 23 23 H 1.08996 * 110.49118 * 335.78911 * 13 12 11 24 24 H 1.09010 * 110.48469 * 98.42784 * 13 12 11 25 25 H 1.08995 * 110.75965 * 279.63484 * 14 13 12 26 26 H 1.09005 * 110.91167 * 156.33041 * 14 13 12 27 27 H 1.09001 * 110.48468 * 203.38175 * 15 14 13 28 28 H 1.08993 * 110.60127 * 80.79117 * 15 14 13 29 29 H 1.09002 * 110.03035 * 238.57175 * 16 12 11 30 30 H 1.09002 * 110.03320 * 359.95110 * 16 12 11 31 31 H 1.08997 * 117.50267 * 0.02562 * 17 9 7 32 32 H 1.08997 * 117.49804 * 145.02813 * 17 9 7 33 33 H 1.09008 * 117.49270 * 214.97677 * 18 9 7 34 34 H 1.09004 * 117.50538 * 359.97438 * 18 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4298 2.0850 1.3979 5 1 3.5787 1.4217 -0.6320 6 1 1.4818 2.6324 -0.7660 7 6 2.0045 -1.1941 0.0005 8 1 1.4662 -2.1284 -0.0617 9 6 3.5090 -1.1956 0.0877 10 6 4.2475 -1.0816 -1.2474 11 8 3.9899 -2.2456 -2.0351 12 6 4.7177 -2.2885 -3.2641 13 6 3.9060 -1.6042 -4.3832 14 6 4.1963 -2.4602 -5.6410 15 6 4.2341 -3.9006 -5.0727 16 6 4.9263 -3.7487 -3.7025 17 6 4.1524 -2.0521 1.1802 18 6 4.1465 -0.5267 1.3072 19 1 -0.4849 0.8401 0.0004 20 1 3.8991 -0.1973 -1.7809 21 1 5.3186 -0.9968 -1.0639 22 1 5.6814 -1.7933 -3.1445 23 1 2.8419 -1.6209 -4.1476 24 1 4.2487 -0.5800 -4.5314 25 1 5.1584 -2.1918 -6.0774 26 1 3.3978 -2.3557 -6.3756 27 1 4.8163 -4.5525 -5.7240 28 1 3.2239 -4.2906 -4.9486 29 1 5.9912 -3.9618 -3.7964 30 1 4.4731 -4.4246 -2.9774 31 1 3.4875 -2.6149 1.8355 32 1 5.1020 -2.5340 0.9479 33 1 5.0923 -0.0057 1.1583 34 1 3.4778 -0.0851 2.0461 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083862451.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:31 Heat of formation + Delta-G solvation = -54.380075 kcal Electronic energy + Delta-G solvation = -14290.360844 eV Core-core repulsion = 11994.708549 eV Total energy + Delta-G solvation = -2295.652295 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.136 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.98629 -38.51492 -36.22854 -34.22217 -29.67721 -29.14189 -27.96721 -26.65288 -23.29135 -21.60229 -21.24733 -20.80232 -18.55446 -17.58985 -16.97014 -16.63986 -15.83729 -15.69404 -14.91239 -14.76466 -14.49908 -14.22159 -13.63390 -13.07957 -13.00336 -12.63778 -12.32520 -12.16824 -11.99901 -11.92554 -11.86472 -11.53134 -11.46952 -11.40255 -10.95898 -10.67076 -10.38599 -10.12783 -8.28225 -6.33925 1.33816 1.35650 1.48601 2.36946 2.74677 3.06064 3.41090 3.71191 3.73608 4.04262 4.16736 4.32944 4.36309 4.43793 4.47134 4.55259 4.60581 4.71147 4.78636 4.83548 4.85320 4.98850 5.05604 5.06986 5.18297 5.24815 5.32933 5.38361 5.47495 5.48103 5.71369 6.31606 6.61958 6.75165 7.33445 8.88631 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.033646 B = 0.009771 C = 0.008781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 832.003702 B = 2865.059514 C = 3188.001303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C 0.014 3.986 3 Si 0.942 3.058 4 H -0.265 1.265 5 H -0.231 1.231 6 H -0.296 1.296 7 C -0.477 4.477 8 H 0.021 0.979 9 C -0.034 4.034 10 C 0.108 3.892 11 O -0.390 6.390 12 C 0.068 3.932 13 C -0.155 4.155 14 C -0.113 4.113 15 C -0.121 4.121 16 C -0.120 4.120 17 C -0.162 4.162 18 C -0.183 4.183 19 H 0.265 0.735 20 H 0.029 0.971 21 H 0.054 0.946 22 H 0.071 0.929 23 H 0.045 0.955 24 H 0.068 0.932 25 H 0.088 0.912 26 H 0.072 0.928 27 H 0.092 0.908 28 H 0.052 0.948 29 H 0.093 0.907 30 H 0.058 0.942 31 H 0.073 0.927 32 H 0.104 0.896 33 H 0.108 0.892 34 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.092 -2.348 -8.411 16.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.594 5.594 2 C -0.183 4.183 3 Si 0.766 3.234 4 H -0.190 1.190 5 H -0.154 1.154 6 H -0.223 1.223 7 C -0.515 4.515 8 H 0.039 0.961 9 C -0.035 4.035 10 C 0.032 3.968 11 O -0.310 6.310 12 C 0.010 3.990 13 C -0.193 4.193 14 C -0.151 4.151 15 C -0.158 4.158 16 C -0.157 4.157 17 C -0.199 4.199 18 C -0.220 4.220 19 H 0.074 0.926 20 H 0.048 0.952 21 H 0.072 0.928 22 H 0.089 0.911 23 H 0.064 0.936 24 H 0.086 0.914 25 H 0.106 0.894 26 H 0.091 0.909 27 H 0.110 0.890 28 H 0.071 0.929 29 H 0.112 0.888 30 H 0.077 0.923 31 H 0.092 0.908 32 H 0.122 0.878 33 H 0.127 0.873 34 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 13.817 -2.398 -8.346 16.319 hybrid contribution -0.561 0.917 0.206 1.095 sum 13.255 -1.481 -8.140 15.626 Atomic orbital electron populations 1.70067 1.08435 1.27970 1.52955 1.25904 0.95348 1.03094 0.93914 0.85848 0.80320 0.78132 0.79140 1.19006 1.15408 1.22293 1.20365 0.89432 0.92389 1.49297 0.96105 1.19287 0.92941 1.03712 0.87548 1.22178 0.96426 0.87139 0.91100 1.88044 1.68052 1.42559 1.32334 1.23079 0.94165 0.97638 0.84095 1.22949 1.00025 0.99785 0.96582 1.22414 1.02624 0.94296 0.95751 1.22340 1.00533 0.97356 0.95570 1.22229 1.01885 0.94188 0.97425 1.22798 1.01633 0.92518 1.02943 1.23043 1.01937 0.95935 1.01054 0.92643 0.95235 0.92786 0.91118 0.93621 0.91371 0.89375 0.90950 0.88993 0.92864 0.88834 0.92303 0.90800 0.87818 0.87342 0.90415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.78 13.96 21.45 0.30 -61.48 16 2 C 0.01 0.82 5.47 84.66 0.46 1.29 16 3 Si 0.94 45.03 24.99 68.60 1.71 46.74 16 4 H -0.26 -12.01 7.11 99.48 0.71 -11.31 16 5 H -0.23 -9.90 5.63 99.48 0.56 -9.33 16 6 H -0.30 -14.17 7.11 99.48 0.71 -13.47 16 7 C -0.48 -28.67 9.35 25.60 0.24 -28.43 16 8 H 0.02 1.43 8.06 -2.91 -0.02 1.41 16 9 C -0.03 -1.62 1.05 -52.93 -0.06 -1.68 16 10 C 0.11 4.57 5.24 71.98 0.38 4.95 16 11 O -0.39 -16.76 9.83 -148.98 -1.46 -18.22 16 12 C 0.07 2.17 3.37 31.32 0.11 2.27 16 13 C -0.16 -4.78 6.53 31.67 0.21 -4.57 16 14 C -0.11 -2.55 6.91 31.89 0.22 -2.33 16 15 C -0.12 -2.73 6.83 31.67 0.22 -2.52 16 16 C -0.12 -3.14 6.61 31.32 0.21 -2.94 16 17 C -0.16 -6.63 9.96 30.62 0.30 -6.32 16 18 C -0.18 -7.41 7.67 30.62 0.23 -7.17 16 19 H 0.26 16.00 8.31 -92.71 -0.77 15.23 16 20 H 0.03 1.31 6.50 -2.39 -0.02 1.29 16 21 H 0.05 1.90 7.94 -2.39 -0.02 1.88 16 22 H 0.07 1.96 7.78 -2.39 -0.02 1.94 16 23 H 0.04 1.72 8.08 -2.39 -0.02 1.71 16 24 H 0.07 1.94 8.14 -2.38 -0.02 1.92 16 25 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 26 H 0.07 1.53 8.14 -2.38 -0.02 1.51 16 27 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 28 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 29 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 30 H 0.06 1.78 7.95 -2.39 -0.02 1.76 16 31 H 0.07 3.17 8.14 -2.39 -0.02 3.15 16 32 H 0.10 3.58 8.14 -2.39 -0.02 3.56 16 33 H 0.11 3.62 8.14 -2.38 -0.02 3.60 16 34 H 0.08 3.35 7.39 -2.38 -0.02 3.33 16 Total: -1.00 -69.89 272.89 3.97 -65.92 By element: Atomic # 1 Polarization: 13.58 SS G_CDS: 0.90 Total: 14.47 kcal Atomic # 6 Polarization: -49.97 SS G_CDS: 2.52 Total: -47.44 kcal Atomic # 7 Polarization: -61.78 SS G_CDS: 0.30 Total: -61.48 kcal Atomic # 8 Polarization: -16.76 SS G_CDS: -1.46 Total: -18.22 kcal Atomic # 14 Polarization: 45.03 SS G_CDS: 1.71 Total: 46.74 kcal Total: -69.89 3.97 -65.92 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083862451.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.545 kcal (2) G-P(sol) polarization free energy of solvation -69.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.925 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds