Wall clock time and date at job start Mon Mar 30 2020 02:11:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46907 * 109.46635 * 2 1 4 4 C 1.50696 * 109.47212 * 240.00248 * 2 1 3 5 5 H 1.08007 * 119.99855 * 239.99711 * 4 2 1 6 6 C 1.37880 * 120.00044 * 59.99539 * 4 2 1 7 7 N 1.31507 * 120.00210 * 0.02562 * 6 4 2 8 8 Si 1.86806 * 119.99848 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46972 * 60.00318 * 8 6 4 10 10 H 1.48495 * 109.46930 * 180.02562 * 8 6 4 11 11 H 1.48503 * 109.47039 * 300.00576 * 8 6 4 12 12 C 1.53001 * 109.47310 * 119.99463 * 2 1 3 13 13 C 1.52998 * 109.47447 * 300.00653 * 12 2 1 14 14 C 1.50697 * 109.46841 * 179.97438 * 13 12 2 15 15 C 1.34333 * 126.44380 * 90.00460 * 14 13 12 16 16 N 1.34480 * 107.66662 * 180.24083 * 15 14 13 17 17 C 1.30251 * 108.69978 * 359.55233 * 16 15 14 18 18 O 1.33964 * 108.76549 * 0.44935 * 17 16 15 19 19 H 1.09003 * 109.46954 * 299.99972 * 1 2 3 20 20 H 1.08995 * 109.47210 * 59.99843 * 1 2 3 21 21 H 1.09001 * 109.46764 * 179.97438 * 1 2 3 22 22 H 1.00905 * 110.99811 * 179.97438 * 3 2 1 23 23 H 1.00894 * 111.00030 * 303.95165 * 3 2 1 24 24 H 0.96995 * 120.00363 * 179.97438 * 7 6 4 25 25 H 1.08997 * 109.47374 * 179.97438 * 12 2 1 26 26 H 1.09009 * 109.46138 * 60.00257 * 12 2 1 27 27 H 1.08997 * 109.47377 * 59.99336 * 13 12 2 28 28 H 1.08997 * 109.46712 * 299.99495 * 13 12 2 29 29 H 1.08002 * 126.16226 * 359.96703 * 15 14 13 30 30 H 1.08002 * 125.61901 * 180.14914 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3851 0.0000 4 6 2.0323 -0.7103 -1.2304 5 1 2.6533 -1.5885 -1.1314 6 6 1.6992 -0.2393 -2.4827 7 7 0.9435 0.8302 -2.6034 8 14 2.3225 -1.1194 -4.0080 9 1 1.8281 -2.5198 -4.0082 10 1 1.8279 -0.4192 -5.2204 11 1 3.8076 -1.1188 -4.0077 12 6 2.0401 -0.7211 1.2493 13 6 1.5300 0.0001 2.4985 14 6 2.0319 -0.7107 3.7289 15 6 3.1802 -0.4633 4.3808 16 7 3.2533 -1.3172 5.4171 17 6 2.1861 -2.0640 5.4190 18 8 1.4130 -1.7135 4.3825 19 1 -0.3633 0.5138 0.8900 20 1 -0.3633 0.5138 -0.8899 21 1 -0.3633 -1.0277 -0.0005 22 1 3.0283 1.4121 0.0004 23 1 1.6441 1.9013 -0.7813 24 1 0.7094 1.1618 -3.4843 25 1 3.1300 -0.7215 1.2491 26 1 1.6767 -1.7489 1.2492 27 1 0.4400 0.0001 2.4985 28 1 1.8933 1.0277 2.4985 29 1 3.9145 0.2835 4.1172 30 1 1.9635 -2.8412 6.1351 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084334548.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:08 Heat of formation + Delta-G solvation = -11.691939 kcal Electronic energy + Delta-G solvation = -13823.470752 eV Core-core repulsion = 11426.129210 eV Total energy + Delta-G solvation = -2397.341542 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.111 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -44.18933 -38.42220 -35.60303 -34.65464 -32.73020 -29.83359 -28.53705 -27.36165 -25.09018 -23.53929 -22.18975 -20.31652 -18.58421 -18.11779 -17.44690 -16.82558 -15.98445 -15.82026 -15.31808 -14.97694 -14.59267 -14.06859 -13.58346 -13.49329 -12.93134 -12.72656 -12.53588 -12.31092 -12.28447 -12.16139 -11.84052 -11.51927 -11.42990 -11.06073 -10.53683 -9.67201 -9.02677 -8.00519 -6.26750 0.61493 1.38445 1.41055 1.47008 1.80639 1.96314 2.40293 3.12789 3.50427 3.96755 4.18787 4.31384 4.37878 4.63884 4.66555 4.81141 4.97166 5.03397 5.14246 5.27572 5.36619 5.45398 5.49988 5.62097 5.82765 6.07796 6.27202 6.75274 6.79385 7.09276 7.24552 7.50993 8.88531 Molecular weight = 210.11amu Principal moments of inertia in cm(-1) A = 0.056314 B = 0.007119 C = 0.006878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 497.092458 B = 3932.405692 C = 4069.784605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.226 3.774 3 N -0.836 5.836 4 C -0.564 4.564 5 H 0.040 0.960 6 C 0.031 3.969 7 N -0.903 5.903 8 Si 0.944 3.056 9 H -0.280 1.280 10 H -0.283 1.283 11 H -0.277 1.277 12 C -0.079 4.079 13 C -0.019 4.019 14 C -0.038 4.038 15 C -0.062 4.062 16 N -0.521 5.521 17 C 0.167 3.833 18 O -0.218 6.218 19 H 0.038 0.962 20 H 0.056 0.944 21 H 0.022 0.978 22 H 0.315 0.685 23 H 0.343 0.657 24 H 0.264 0.736 25 H 0.046 0.954 26 H 0.039 0.961 27 H 0.076 0.924 28 H 0.110 0.890 29 H 0.193 0.807 30 H 0.294 0.706 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.769 -2.570 10.246 10.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.134 3.866 3 N -0.364 5.364 4 C -0.604 4.604 5 H 0.058 0.942 6 C -0.169 4.169 7 N -0.543 5.543 8 Si 0.771 3.229 9 H -0.205 1.205 10 H -0.208 1.208 11 H -0.202 1.202 12 C -0.118 4.118 13 C -0.056 4.056 14 C -0.091 4.091 15 C -0.199 4.199 16 N -0.249 5.249 17 C -0.059 4.059 18 O -0.105 6.105 19 H 0.057 0.943 20 H 0.075 0.925 21 H 0.041 0.959 22 H 0.124 0.876 23 H 0.157 0.843 24 H 0.073 0.927 25 H 0.065 0.935 26 H 0.057 0.943 27 H 0.094 0.906 28 H 0.128 0.872 29 H 0.210 0.790 30 H 0.309 0.691 Dipole moment (debyes) X Y Z Total from point charges 0.737 -2.447 11.239 11.526 hybrid contribution 0.248 -0.806 -2.470 2.610 sum 0.985 -3.253 8.769 9.405 Atomic orbital electron populations 1.21679 0.97602 0.98421 1.00396 1.18331 0.91857 0.86541 0.89854 1.59454 1.11442 1.14738 1.50741 1.22174 1.31919 1.13097 0.93170 0.94188 1.25523 0.94697 0.95664 1.01052 1.69767 1.36873 1.23478 1.24135 0.85841 0.78589 0.78764 0.79693 1.20544 1.20850 1.20232 1.21411 0.99262 0.97616 0.93484 1.20117 1.01363 0.98468 0.85668 1.24009 0.95056 0.91706 0.98308 1.23273 0.99054 1.03061 0.94508 1.70399 1.24138 1.08114 1.22299 1.29091 0.85269 1.00970 0.90571 1.84454 1.47150 1.43036 1.35904 0.94325 0.92490 0.95893 0.87574 0.84307 0.92672 0.93482 0.94266 0.90578 0.87165 0.79040 0.69140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.66 8.16 71.98 0.59 -5.08 16 2 C 0.23 10.36 0.61 2.78 0.00 10.36 16 3 N -0.84 -36.58 8.07 -154.51 -1.25 -37.83 16 4 C -0.56 -29.39 8.18 25.60 0.21 -29.18 16 5 H 0.04 2.13 7.74 -2.91 -0.02 2.10 16 6 C 0.03 1.62 5.22 84.66 0.44 2.06 16 7 N -0.90 -47.52 9.57 21.45 0.21 -47.32 16 8 Si 0.94 42.13 29.54 68.60 2.03 44.16 16 9 H -0.28 -12.50 7.11 99.48 0.71 -11.80 16 10 H -0.28 -12.38 7.11 99.48 0.71 -11.68 16 11 H -0.28 -12.22 7.11 99.48 0.71 -11.52 16 12 C -0.08 -3.16 4.34 30.59 0.13 -3.03 16 13 C -0.02 -0.63 5.26 29.85 0.16 -0.47 16 14 C -0.04 -1.20 6.64 24.79 0.16 -1.04 16 15 C -0.06 -1.88 11.80 83.39 0.98 -0.89 16 16 N -0.52 -15.24 11.29 -316.07 -3.57 -18.80 16 17 C 0.17 3.91 13.23 130.48 1.73 5.64 16 18 O -0.22 -6.47 10.78 -3.73 -0.04 -6.51 16 19 H 0.04 1.59 6.43 -2.39 -0.02 1.57 16 20 H 0.06 2.91 6.07 -2.39 -0.01 2.89 16 21 H 0.02 1.02 8.14 -2.39 -0.02 1.00 16 22 H 0.32 13.32 8.99 -89.69 -0.81 12.51 16 23 H 0.34 16.49 6.99 -89.70 -0.63 15.86 16 24 H 0.26 13.43 8.31 -92.71 -0.77 12.66 16 25 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 26 H 0.04 1.62 8.14 -2.38 -0.02 1.60 16 27 H 0.08 2.59 6.43 -2.39 -0.02 2.57 16 28 H 0.11 3.60 7.60 -2.39 -0.02 3.59 16 29 H 0.19 5.07 8.06 -2.91 -0.02 5.04 16 30 H 0.29 3.15 8.06 -2.91 -0.02 3.13 16 Total: -1.00 -58.04 253.13 1.51 -56.53 By element: Atomic # 1 Polarization: 31.66 SS G_CDS: -0.27 Total: 31.39 kcal Atomic # 6 Polarization: -26.03 SS G_CDS: 4.41 Total: -21.62 kcal Atomic # 7 Polarization: -99.34 SS G_CDS: -4.61 Total: -103.95 kcal Atomic # 8 Polarization: -6.47 SS G_CDS: -0.04 Total: -6.51 kcal Atomic # 14 Polarization: 42.13 SS G_CDS: 2.03 Total: 44.16 kcal Total: -58.04 1.51 -56.53 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084334548.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.838 kcal (2) G-P(sol) polarization free energy of solvation -58.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.530 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds