Wall clock time and date at job start Mon Mar 30 2020 02:11:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46905 * 109.46978 * 2 1 4 4 C 1.50700 * 109.47141 * 119.99922 * 2 1 3 5 5 H 1.08003 * 120.00031 * 120.00141 * 4 2 1 6 6 C 1.37877 * 119.99851 * 300.00171 * 4 2 1 7 7 N 1.31513 * 120.00267 * 359.97438 * 6 4 2 8 8 Si 1.86801 * 119.99704 * 179.97438 * 6 4 2 9 9 H 1.48505 * 109.46870 * 90.00154 * 8 6 4 10 10 H 1.48496 * 109.47201 * 209.99679 * 8 6 4 11 11 H 1.48497 * 109.47507 * 330.00049 * 8 6 4 12 12 C 1.52998 * 109.47343 * 239.99999 * 2 1 3 13 13 C 1.52999 * 109.47027 * 64.99937 * 12 2 1 14 14 C 1.50703 * 109.47102 * 180.02562 * 13 12 2 15 15 C 1.34330 * 126.44646 * 89.99915 * 14 13 12 16 16 N 1.34473 * 107.66993 * 179.97438 * 15 14 13 17 17 C 1.30261 * 108.70345 * 359.97438 * 16 15 14 18 18 O 1.33970 * 108.75688 * 359.73809 * 17 16 15 19 19 H 1.08996 * 109.47124 * 60.00595 * 1 2 3 20 20 H 1.09006 * 109.46931 * 179.97438 * 1 2 3 21 21 H 1.08994 * 109.47433 * 299.99860 * 1 2 3 22 22 H 1.00901 * 110.99869 * 180.02562 * 3 2 1 23 23 H 1.00896 * 110.99543 * 303.95346 * 3 2 1 24 24 H 0.97003 * 119.99846 * 180.02562 * 7 6 4 25 25 H 1.09001 * 109.47569 * 184.99558 * 12 2 1 26 26 H 1.09002 * 109.47224 * 304.99843 * 12 2 1 27 27 H 1.09001 * 109.47188 * 299.99663 * 13 12 2 28 28 H 1.08995 * 109.47354 * 60.00204 * 13 12 2 29 29 H 1.07999 * 126.16317 * 359.97438 * 15 14 13 30 30 H 1.07996 * 125.62277 * 180.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6533 -1.5885 1.1314 6 6 1.6992 -0.2393 2.4827 7 7 0.9435 0.8302 2.6034 8 14 2.3213 -1.1203 4.0079 9 1 3.6296 -0.5458 4.4123 10 1 1.3431 -0.9492 5.1120 11 1 2.4858 -2.5662 3.7120 12 6 2.0400 -0.7212 -1.2492 13 6 1.6353 0.0689 -2.4953 14 6 2.1371 -0.6418 -3.7258 15 6 1.4794 -1.5765 -4.4315 16 7 2.2730 -1.9529 -5.4497 17 6 3.3854 -1.2783 -5.3836 18 8 3.3272 -0.4539 -4.3293 19 1 -0.3633 0.5137 -0.8900 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3634 0.5138 0.8899 22 1 3.0283 1.4120 -0.0004 23 1 1.6441 1.9012 -0.7814 24 1 0.7095 1.1618 3.4844 25 1 3.1264 -0.7994 -1.2056 26 1 1.6055 -1.7198 -1.2951 27 1 0.5489 0.1471 -2.5390 28 1 2.0699 1.0675 -2.4494 29 1 0.4912 -1.9572 -4.2193 30 1 4.2156 -1.3656 -6.0688 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084334550.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:10 Heat of formation + Delta-G solvation = 18.490601 kcal Electronic energy + Delta-G solvation = -13825.297844 eV Core-core repulsion = 11429.265115 eV Total energy + Delta-G solvation = -2396.032729 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.111 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -43.15025 -36.84183 -34.54679 -32.83291 -31.12355 -28.18634 -27.20193 -25.34234 -23.57062 -22.51288 -21.06608 -18.63591 -17.44697 -16.34874 -16.16928 -14.94453 -14.69603 -14.19107 -13.82277 -13.64748 -13.02049 -12.91167 -12.29256 -11.87480 -11.23937 -11.13213 -10.90476 -10.66339 -10.58661 -10.40093 -10.14404 -10.03262 -9.63921 -8.91944 -8.54357 -8.33978 -6.98368 -5.81900 -3.99863 1.64584 2.84338 2.93394 3.33653 3.40873 3.43679 4.35222 4.48328 5.03780 5.24542 5.37352 5.42302 5.71036 5.79097 5.99432 6.16945 6.21460 6.45156 6.53871 6.56899 6.83336 6.94282 7.19645 7.31900 7.81644 7.85442 8.05023 8.36751 8.69911 9.03619 9.20433 9.69371 11.17512 Molecular weight = 210.11amu Principal moments of inertia in cm(-1) A = 0.056109 B = 0.007133 C = 0.006884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 498.907711 B = 3924.743643 C = 4066.713851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.247 3.753 3 N -0.811 5.811 4 C -0.530 4.530 5 H 0.051 0.949 6 C 0.086 3.914 7 N -0.845 5.845 8 Si 0.880 3.120 9 H -0.282 1.282 10 H -0.287 1.287 11 H -0.277 1.277 12 C -0.136 4.136 13 C -0.044 4.044 14 C -0.015 4.015 15 C -0.060 4.060 16 N -0.488 5.488 17 C 0.147 3.853 18 O -0.205 6.205 19 H 0.007 0.993 20 H 0.029 0.971 21 H 0.090 0.910 22 H 0.318 0.682 23 H 0.295 0.705 24 H 0.254 0.746 25 H 0.050 0.950 26 H 0.057 0.943 27 H 0.098 0.902 28 H 0.077 0.923 29 H 0.181 0.819 30 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.101 -1.115 -11.007 11.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.156 3.844 3 N -0.338 5.338 4 C -0.568 4.568 5 H 0.069 0.931 6 C -0.120 4.120 7 N -0.480 5.480 8 Si 0.708 3.292 9 H -0.208 1.208 10 H -0.213 1.213 11 H -0.202 1.202 12 C -0.176 4.176 13 C -0.082 4.082 14 C -0.069 4.069 15 C -0.198 4.198 16 N -0.217 5.217 17 C -0.079 4.079 18 O -0.091 6.091 19 H 0.026 0.974 20 H 0.048 0.952 21 H 0.109 0.891 22 H 0.129 0.871 23 H 0.106 0.894 24 H 0.064 0.936 25 H 0.069 0.931 26 H 0.076 0.924 27 H 0.116 0.884 28 H 0.096 0.904 29 H 0.198 0.802 30 H 0.260 0.740 Dipole moment (debyes) X Y Z Total from point charges 1.516 -1.328 -10.604 10.794 hybrid contribution 1.055 -0.377 0.289 1.158 sum 2.572 -1.705 -10.315 10.766 Atomic orbital electron populations 1.21822 0.97419 0.98913 1.00618 1.18373 0.91994 0.84602 0.89452 1.59105 1.11315 1.15676 1.47736 1.20862 1.33702 1.12149 0.90120 0.93121 1.24893 0.94458 0.94328 0.98361 1.70022 1.34460 1.21244 1.22225 0.86823 0.78711 0.80143 0.83514 1.20831 1.21332 1.20167 1.22590 1.00621 0.99809 0.94582 1.20501 1.01143 0.98765 0.87782 1.24003 0.83848 1.00928 0.98078 1.23004 1.02284 1.00221 0.94243 1.70368 1.03015 1.25299 1.23019 1.27918 0.99300 0.90167 0.90507 1.84449 1.35801 1.52980 1.35910 0.97444 0.95205 0.89097 0.87087 0.89388 0.93618 0.93136 0.92431 0.88422 0.90410 0.80186 0.73952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.95 8.27 37.16 0.31 -2.64 16 2 C 0.25 5.65 0.57 -132.75 -0.08 5.58 16 3 N -0.81 -18.01 7.98 -0.19 0.00 -18.01 16 4 C -0.53 -14.06 8.18 -34.44 -0.28 -14.35 16 5 H 0.05 1.36 7.74 -52.48 -0.41 0.95 16 6 C 0.09 2.32 5.23 -17.82 -0.09 2.23 16 7 N -0.84 -23.53 10.80 55.43 0.60 -22.93 16 8 Si 0.88 20.99 29.54 -169.99 -5.02 15.97 16 9 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 10 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 11 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 12 C -0.14 -2.65 4.33 -26.73 -0.12 -2.76 16 13 C -0.04 -0.71 5.06 -27.88 -0.14 -0.85 16 14 C -0.02 -0.24 6.64 -35.69 -0.24 -0.48 16 15 C -0.06 -0.91 11.80 -17.77 -0.21 -1.12 16 16 N -0.49 -7.42 11.29 -14.97 -0.17 -7.59 16 17 C 0.15 1.87 13.23 52.10 0.69 2.56 16 18 O -0.21 -3.10 10.78 5.34 0.06 -3.04 16 19 H 0.01 0.13 6.56 -51.93 -0.34 -0.21 16 20 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 21 H 0.09 2.36 6.07 -51.93 -0.32 2.04 16 22 H 0.32 6.90 8.99 -39.29 -0.35 6.54 16 23 H 0.29 5.76 7.21 -39.29 -0.28 5.48 16 24 H 0.25 6.85 8.31 -40.82 -0.34 6.51 16 25 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 26 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 27 H 0.10 1.49 6.57 -51.93 -0.34 1.14 16 28 H 0.08 1.21 6.70 -51.93 -0.35 0.86 16 29 H 0.18 2.39 8.06 -52.49 -0.42 1.97 16 30 H 0.24 1.74 8.06 -52.49 -0.42 1.32 16 LS Contribution 253.71 15.07 3.82 3.82 Total: -1.00 -29.91 253.71 -4.51 -34.41 By element: Atomic # 1 Polarization: 12.85 SS G_CDS: -3.64 Total: 9.21 kcal Atomic # 6 Polarization: -11.68 SS G_CDS: -0.16 Total: -11.84 kcal Atomic # 7 Polarization: -48.97 SS G_CDS: 0.43 Total: -48.54 kcal Atomic # 8 Polarization: -3.10 SS G_CDS: 0.06 Total: -3.04 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Total LS contribution 3.82 Total: 3.82 kcal Total: -29.91 -4.51 -34.41 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084334550.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.903 kcal (2) G-P(sol) polarization free energy of solvation -29.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.412 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds