Wall clock time and date at job start Mon Mar 30 2020 02:10:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46905 * 109.46987 * 2 1 4 4 C 1.50698 * 109.47188 * 240.00503 * 2 1 3 5 5 H 1.08003 * 120.00057 * 240.00086 * 4 2 1 6 6 C 1.37876 * 120.00356 * 59.99286 * 4 2 1 7 7 N 1.31519 * 119.99989 * 0.02562 * 6 4 2 8 8 Si 1.86801 * 120.00117 * 179.97438 * 6 4 2 9 9 H 1.48498 * 109.47306 * 0.02562 * 8 6 4 10 10 H 1.48507 * 109.47019 * 120.00329 * 8 6 4 11 11 H 1.48498 * 109.47326 * 240.00104 * 8 6 4 12 12 C 1.52992 * 109.47224 * 119.99825 * 2 1 3 13 13 C 1.52997 * 109.47482 * 300.00294 * 12 2 1 14 14 C 1.50701 * 109.47212 * 179.97438 * 13 12 2 15 15 C 1.41380 * 126.80085 * 124.70537 * 14 13 12 16 16 C 1.35447 * 103.98725 * 179.88704 * 15 14 13 17 17 O 1.34046 * 106.44398 * 0.37525 * 16 15 14 18 18 N 1.20921 * 111.56555 * 359.74709 * 17 16 15 19 19 H 1.09004 * 109.47552 * 299.99821 * 1 2 3 20 20 H 1.09004 * 109.47298 * 59.99949 * 1 2 3 21 21 H 1.09001 * 109.46993 * 179.97438 * 1 2 3 22 22 H 1.00907 * 110.99883 * 56.04413 * 3 2 1 23 23 H 1.00900 * 110.99847 * 180.02562 * 3 2 1 24 24 H 0.96996 * 119.99885 * 179.97438 * 7 6 4 25 25 H 1.09002 * 109.47103 * 180.02562 * 12 2 1 26 26 H 1.08998 * 109.46862 * 60.00859 * 12 2 1 27 27 H 1.09002 * 109.47153 * 59.99783 * 13 12 2 28 28 H 1.09001 * 109.46832 * 299.99974 * 13 12 2 29 29 H 1.07999 * 128.00770 * 0.03468 * 15 14 13 30 30 H 1.07999 * 126.77784 * 180.09784 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6532 -1.5884 -1.1315 6 6 1.6992 -0.2393 -2.4828 7 7 0.9433 0.8303 -2.6034 8 14 2.3225 -1.1194 -4.0080 9 1 3.1475 -2.2861 -3.6039 10 1 1.1678 -1.5865 -4.8166 11 1 3.1471 -0.1855 -4.8161 12 6 2.0400 -0.7212 1.2492 13 6 1.5300 0.0000 2.4984 14 6 2.0318 -0.7108 3.7289 15 6 2.7702 -0.1434 4.7928 16 6 2.9721 -1.1802 5.6406 17 8 2.3917 -2.2494 5.0777 18 7 1.8765 -1.9700 4.0200 19 1 -0.3634 0.5138 0.8900 20 1 -0.3634 0.5139 -0.8900 21 1 -0.3633 -1.0277 -0.0005 22 1 1.6440 1.9014 0.7814 23 1 3.0283 1.4120 -0.0004 24 1 0.7093 1.1618 -3.4844 25 1 3.1300 -0.7208 1.2494 26 1 1.6767 -1.7488 1.2491 27 1 0.4400 0.0000 2.4985 28 1 1.8933 1.0277 2.4984 29 1 3.0955 0.8803 4.9048 30 1 3.5006 -1.1522 6.5820 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084334552.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:48 Heat of formation + Delta-G solvation = 56.431930 kcal Electronic energy + Delta-G solvation = -13829.228424 eV Core-core repulsion = 11434.840955 eV Total energy + Delta-G solvation = -2394.387470 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.111 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -44.74865 -36.90419 -34.28533 -31.94884 -31.42703 -29.24820 -27.37240 -25.31172 -23.77720 -22.96547 -20.71090 -18.47574 -17.63151 -17.31271 -16.08577 -14.99775 -14.55140 -13.94282 -13.86810 -13.45015 -13.20855 -12.69062 -12.00592 -11.94890 -11.28748 -11.01232 -10.83212 -10.54923 -10.38298 -10.17559 -10.03384 -9.77081 -9.54616 -9.34457 -8.73595 -8.29363 -6.91835 -5.76522 -3.93821 1.64207 2.45561 3.35962 3.40799 3.44324 3.48181 4.45820 4.52576 4.72955 5.26272 5.42507 5.44117 5.59974 5.80971 5.94960 6.02628 6.22979 6.37471 6.63325 6.69284 6.96605 7.06850 7.28736 7.40679 7.91146 8.11776 8.44235 8.49517 8.76529 9.10465 9.26889 9.74963 11.22967 Molecular weight = 210.11amu Principal moments of inertia in cm(-1) A = 0.056715 B = 0.007167 C = 0.006816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 493.573946 B = 3905.740332 C = 4106.698211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.246 3.754 3 N -0.810 5.810 4 C -0.527 4.527 5 H 0.050 0.950 6 C 0.085 3.915 7 N -0.846 5.846 8 Si 0.879 3.121 9 H -0.276 1.276 10 H -0.286 1.286 11 H -0.285 1.285 12 C -0.132 4.132 13 C -0.049 4.049 14 C 0.030 3.970 15 C -0.236 4.236 16 C -0.072 4.072 17 O 0.092 5.908 18 N -0.363 5.363 19 H 0.007 0.993 20 H 0.089 0.911 21 H 0.027 0.973 22 H 0.294 0.706 23 H 0.316 0.684 24 H 0.252 0.748 25 H 0.045 0.955 26 H 0.057 0.943 27 H 0.084 0.916 28 H 0.077 0.923 29 H 0.168 0.832 30 H 0.212 0.788 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.037 -0.271 13.877 14.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.155 3.845 3 N -0.337 5.337 4 C -0.566 4.566 5 H 0.069 0.931 6 C -0.121 4.121 7 N -0.481 5.481 8 Si 0.707 3.293 9 H -0.201 1.201 10 H -0.212 1.212 11 H -0.211 1.211 12 C -0.173 4.173 13 C -0.087 4.087 14 C -0.129 4.129 15 C -0.257 4.257 16 C -0.154 4.154 17 O 0.027 5.973 18 N -0.068 5.068 19 H 0.026 0.974 20 H 0.108 0.892 21 H 0.047 0.953 22 H 0.105 0.895 23 H 0.128 0.872 24 H 0.062 0.938 25 H 0.063 0.937 26 H 0.076 0.924 27 H 0.102 0.898 28 H 0.096 0.904 29 H 0.186 0.814 30 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges 1.959 -1.107 12.416 12.619 hybrid contribution 1.261 0.132 0.432 1.339 sum 3.220 -0.975 12.848 13.281 Atomic orbital electron populations 1.21814 0.97548 0.98846 1.00476 1.18364 0.91929 0.84568 0.89682 1.59108 1.11192 1.15795 1.47652 1.20921 1.33438 1.12015 0.90181 0.93134 1.24902 0.94529 0.94333 0.98339 1.70042 1.34717 1.21330 1.22000 0.86775 0.78716 0.79811 0.83974 1.20054 1.21179 1.21146 1.22465 0.99532 1.00441 0.94832 1.20306 1.01273 0.98036 0.89114 1.24025 0.99433 0.90234 0.99240 1.22805 1.05469 1.01974 0.95443 1.25950 1.01481 0.86546 1.01422 1.84850 1.52088 1.34750 1.25628 1.73859 1.16658 1.17460 0.98805 0.97441 0.89202 0.95339 0.89490 0.87220 0.93756 0.93654 0.92418 0.89823 0.90442 0.81434 0.77151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.12 8.16 37.16 0.30 -2.81 16 2 C 0.25 5.92 0.57 -132.76 -0.08 5.85 16 3 N -0.81 -18.58 8.07 -0.20 0.00 -18.58 16 4 C -0.53 -14.55 8.18 -34.44 -0.28 -14.83 16 5 H 0.05 1.42 7.74 -52.48 -0.41 1.01 16 6 C 0.08 2.36 5.23 -17.82 -0.09 2.27 16 7 N -0.85 -24.19 10.80 55.43 0.60 -23.59 16 8 Si 0.88 21.53 29.54 -169.99 -5.02 16.51 16 9 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 10 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 11 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 12 C -0.13 -2.79 4.33 -26.74 -0.12 -2.91 16 13 C -0.05 -0.86 5.12 -27.88 -0.14 -1.00 16 14 C 0.03 0.49 6.59 -82.10 -0.54 -0.06 16 15 C -0.24 -2.94 11.12 -39.38 -0.44 -3.38 16 16 C -0.07 -0.77 12.30 29.74 0.37 -0.40 16 17 O 0.09 1.33 11.20 17.16 0.19 1.52 16 18 N -0.36 -6.34 12.06 33.42 0.40 -5.94 16 19 H 0.01 0.15 6.43 -51.93 -0.33 -0.19 16 20 H 0.09 2.43 6.07 -51.93 -0.32 2.12 16 21 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 22 H 0.29 5.93 7.31 -39.29 -0.29 5.64 16 23 H 0.32 7.03 8.99 -39.29 -0.35 6.68 16 24 H 0.25 6.95 8.31 -40.82 -0.34 6.61 16 25 H 0.04 0.97 8.14 -51.93 -0.42 0.55 16 26 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 27 H 0.08 1.50 6.43 -51.93 -0.33 1.16 16 28 H 0.08 1.22 6.76 -51.93 -0.35 0.87 16 29 H 0.17 1.63 8.06 -52.49 -0.42 1.21 16 30 H 0.21 1.14 8.06 -52.49 -0.42 0.72 16 LS Contribution 253.17 15.07 3.82 3.82 Total: -1.00 -30.83 253.17 -4.66 -35.49 By element: Atomic # 1 Polarization: 11.68 SS G_CDS: -3.63 Total: 8.05 kcal Atomic # 6 Polarization: -16.26 SS G_CDS: -1.02 Total: -17.28 kcal Atomic # 7 Polarization: -49.11 SS G_CDS: 1.00 Total: -48.11 kcal Atomic # 8 Polarization: 1.33 SS G_CDS: 0.19 Total: 1.52 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 3.82 Total: 3.82 kcal Total: -30.83 -4.66 -35.49 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084334552.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.921 kcal (2) G-P(sol) polarization free energy of solvation -30.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.489 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds