Wall clock time and date at job start Mon Mar 30 2020 02:10:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46905 * 109.46987 * 2 1 4 4 C 1.50698 * 109.47188 * 240.00503 * 2 1 3 5 5 H 1.08003 * 120.00057 * 240.00086 * 4 2 1 6 6 C 1.37876 * 120.00356 * 59.99286 * 4 2 1 7 7 N 1.31519 * 119.99989 * 0.02562 * 6 4 2 8 8 Si 1.86801 * 120.00117 * 179.97438 * 6 4 2 9 9 H 1.48498 * 109.47306 * 0.02562 * 8 6 4 10 10 H 1.48507 * 109.47019 * 120.00329 * 8 6 4 11 11 H 1.48498 * 109.47326 * 240.00104 * 8 6 4 12 12 C 1.52992 * 109.47224 * 119.99825 * 2 1 3 13 13 C 1.52997 * 109.47482 * 300.00294 * 12 2 1 14 14 C 1.50701 * 109.47212 * 179.97438 * 13 12 2 15 15 C 1.41380 * 126.80085 * 124.70537 * 14 13 12 16 16 C 1.35447 * 103.98725 * 179.88704 * 15 14 13 17 17 O 1.34046 * 106.44398 * 0.37525 * 16 15 14 18 18 N 1.20921 * 111.56555 * 359.74709 * 17 16 15 19 19 H 1.09004 * 109.47552 * 299.99821 * 1 2 3 20 20 H 1.09004 * 109.47298 * 59.99949 * 1 2 3 21 21 H 1.09001 * 109.46993 * 179.97438 * 1 2 3 22 22 H 1.00907 * 110.99883 * 56.04413 * 3 2 1 23 23 H 1.00900 * 110.99847 * 180.02562 * 3 2 1 24 24 H 0.96996 * 119.99885 * 179.97438 * 7 6 4 25 25 H 1.09002 * 109.47103 * 180.02562 * 12 2 1 26 26 H 1.08998 * 109.46862 * 60.00859 * 12 2 1 27 27 H 1.09002 * 109.47153 * 59.99783 * 13 12 2 28 28 H 1.09001 * 109.46832 * 299.99974 * 13 12 2 29 29 H 1.07999 * 128.00770 * 0.03468 * 15 14 13 30 30 H 1.07999 * 126.77784 * 180.09784 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6532 -1.5884 -1.1315 6 6 1.6992 -0.2393 -2.4828 7 7 0.9433 0.8303 -2.6034 8 14 2.3225 -1.1194 -4.0080 9 1 3.1475 -2.2861 -3.6039 10 1 1.1678 -1.5865 -4.8166 11 1 3.1471 -0.1855 -4.8161 12 6 2.0400 -0.7212 1.2492 13 6 1.5300 0.0000 2.4984 14 6 2.0318 -0.7108 3.7289 15 6 2.7702 -0.1434 4.7928 16 6 2.9721 -1.1802 5.6406 17 8 2.3917 -2.2494 5.0777 18 7 1.8765 -1.9700 4.0200 19 1 -0.3634 0.5138 0.8900 20 1 -0.3634 0.5139 -0.8900 21 1 -0.3633 -1.0277 -0.0005 22 1 1.6440 1.9014 0.7814 23 1 3.0283 1.4120 -0.0004 24 1 0.7093 1.1618 -3.4844 25 1 3.1300 -0.7208 1.2494 26 1 1.6767 -1.7488 1.2491 27 1 0.4400 0.0000 2.4985 28 1 1.8933 1.0277 2.4984 29 1 3.0955 0.8803 4.9048 30 1 3.5006 -1.1522 6.5820 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084334552.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:48 Heat of formation + Delta-G solvation = 34.814754 kcal Electronic energy + Delta-G solvation = -13830.165815 eV Core-core repulsion = 11434.840955 eV Total energy + Delta-G solvation = -2395.324861 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.111 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -45.85507 -38.65732 -35.63910 -33.78157 -32.60682 -30.81738 -29.25019 -27.35261 -25.44131 -24.01888 -21.95863 -20.25701 -18.74722 -18.46577 -18.07716 -16.72618 -16.07473 -15.68193 -15.41220 -15.02970 -14.64283 -14.09846 -13.72455 -13.50025 -12.91496 -12.76288 -12.54743 -12.42542 -12.18194 -12.06820 -11.85291 -11.36269 -10.99691 -10.68585 -10.51280 -10.36895 -8.74692 -7.87428 -6.11547 0.70812 1.35733 1.40278 1.43649 1.52676 2.48346 2.57224 3.29428 3.33995 3.68285 4.23824 4.28621 4.33653 4.44622 4.50606 4.73101 4.82570 4.90856 4.96811 5.16532 5.21763 5.25111 5.40284 5.51903 5.75911 6.10335 6.42015 6.74762 7.20561 7.43506 7.47112 7.60558 9.09232 Molecular weight = 210.11amu Principal moments of inertia in cm(-1) A = 0.056715 B = 0.007167 C = 0.006816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 493.573946 B = 3905.740332 C = 4106.698211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.241 3.759 3 N -0.818 5.818 4 C -0.548 4.548 5 H 0.035 0.965 6 C 0.043 3.957 7 N -0.867 5.867 8 Si 0.936 3.064 9 H -0.278 1.278 10 H -0.282 1.282 11 H -0.281 1.281 12 C -0.116 4.116 13 C -0.038 4.038 14 C 0.000 4.000 15 C -0.243 4.243 16 C -0.047 4.047 17 O 0.087 5.913 18 N -0.406 5.406 19 H 0.033 0.967 20 H 0.061 0.939 21 H 0.018 0.982 22 H 0.312 0.688 23 H 0.320 0.680 24 H 0.252 0.748 25 H 0.037 0.963 26 H 0.032 0.968 27 H 0.076 0.924 28 H 0.096 0.904 29 H 0.197 0.803 30 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.969 0.269 15.538 16.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.150 3.850 3 N -0.347 5.347 4 C -0.587 4.587 5 H 0.053 0.947 6 C -0.160 4.160 7 N -0.502 5.502 8 Si 0.763 3.237 9 H -0.203 1.203 10 H -0.208 1.208 11 H -0.207 1.207 12 C -0.156 4.156 13 C -0.076 4.076 14 C -0.157 4.157 15 C -0.264 4.264 16 C -0.128 4.128 17 O 0.022 5.978 18 N -0.112 5.112 19 H 0.052 0.948 20 H 0.080 0.920 21 H 0.037 0.963 22 H 0.125 0.875 23 H 0.132 0.868 24 H 0.062 0.938 25 H 0.056 0.944 26 H 0.051 0.949 27 H 0.094 0.906 28 H 0.115 0.885 29 H 0.214 0.786 30 H 0.283 0.717 Dipole moment (debyes) X Y Z Total from point charges 2.887 -0.563 14.078 14.382 hybrid contribution 1.002 -0.052 0.010 1.003 sum 3.889 -0.615 14.088 14.628 Atomic orbital electron populations 1.21678 0.97797 0.98113 1.00306 1.18283 0.91701 0.85263 0.89768 1.58903 1.11572 1.15295 1.48928 1.21247 1.33386 1.11979 0.92097 0.94705 1.25493 0.94805 0.95048 1.00700 1.70154 1.35393 1.22271 1.22432 0.85884 0.78181 0.78724 0.80911 1.20250 1.20816 1.20654 1.22154 0.98780 0.99067 0.95648 1.20077 1.00729 0.98636 0.88129 1.24071 1.01038 0.90585 1.00033 1.23152 1.05098 1.03814 0.94361 1.26949 0.99164 0.84513 1.02152 1.84788 1.52057 1.36076 1.24909 1.73864 1.18419 1.18448 1.00442 0.94811 0.92002 0.96332 0.87504 0.86818 0.93837 0.94423 0.94922 0.90598 0.88521 0.78628 0.71710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.89 8.16 71.98 0.59 -5.30 16 2 C 0.24 11.69 0.57 2.78 0.00 11.69 16 3 N -0.82 -37.01 8.07 -154.53 -1.25 -38.25 16 4 C -0.55 -30.74 8.18 25.60 0.21 -30.53 16 5 H 0.03 2.00 7.74 -2.91 -0.02 1.98 16 6 C 0.04 2.42 5.23 84.65 0.44 2.86 16 7 N -0.87 -49.81 10.80 21.45 0.23 -49.58 16 8 Si 0.94 44.60 29.54 68.60 2.03 46.63 16 9 H -0.28 -13.18 7.11 99.48 0.71 -12.47 16 10 H -0.28 -13.21 7.11 99.48 0.71 -12.50 16 11 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 12 C -0.12 -4.93 4.33 30.59 0.13 -4.80 16 13 C -0.04 -1.29 5.12 29.85 0.15 -1.13 16 14 C 0.00 0.01 6.59 43.58 0.29 0.30 16 15 C -0.24 -5.28 11.12 22.40 0.25 -5.03 16 16 C -0.05 -0.81 12.30 67.17 0.83 0.01 16 17 O 0.09 2.34 11.20 71.58 0.80 3.14 16 18 N -0.41 -13.94 12.06 -49.56 -0.60 -14.53 16 19 H 0.03 1.41 6.43 -2.39 -0.02 1.40 16 20 H 0.06 3.38 6.07 -2.38 -0.01 3.36 16 21 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16 22 H 0.31 12.13 7.31 -89.69 -0.66 11.48 16 23 H 0.32 14.01 8.99 -89.69 -0.81 13.20 16 24 H 0.25 13.94 8.31 -92.71 -0.77 13.17 16 25 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 26 H 0.03 1.51 8.14 -2.39 -0.02 1.50 16 27 H 0.08 2.67 6.43 -2.39 -0.02 2.65 16 28 H 0.10 2.86 6.76 -2.39 -0.02 2.84 16 29 H 0.20 2.98 8.06 -2.91 -0.02 2.95 16 30 H 0.27 1.29 8.06 -2.91 -0.02 1.27 16 Total: -1.00 -67.42 253.17 3.80 -63.61 By element: Atomic # 1 Polarization: 21.20 SS G_CDS: -0.30 Total: 20.90 kcal Atomic # 6 Polarization: -34.81 SS G_CDS: 2.89 Total: -31.92 kcal Atomic # 7 Polarization: -100.75 SS G_CDS: -1.61 Total: -102.37 kcal Atomic # 8 Polarization: 2.34 SS G_CDS: 0.80 Total: 3.14 kcal Atomic # 14 Polarization: 44.60 SS G_CDS: 2.03 Total: 46.63 kcal Total: -67.42 3.80 -63.61 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084334552.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.429 kcal (2) G-P(sol) polarization free energy of solvation -67.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.615 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds