Wall clock time and date at job start Mon Mar 30 2020 02:20:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52994 * 109.47040 * 2 1 4 4 N 1.46505 * 109.46950 * 179.97438 * 3 2 1 5 5 C 1.35044 * 126.39792 * 265.51007 * 4 3 2 6 6 N 1.30500 * 108.69942 * 179.82547 * 5 4 3 7 7 C 1.34125 * 109.25589 * 0.44783 * 6 5 4 8 8 C 1.34666 * 108.02046 * 359.72403 * 7 6 5 9 9 C 1.50707 * 126.59160 * 179.97438 * 8 7 6 10 10 H 1.08991 * 109.47143 * 155.23657 * 9 8 7 11 11 O 1.42897 * 109.47003 * 35.23381 * 9 8 7 12 12 C 1.50701 * 109.46884 * 275.23995 * 9 8 7 13 13 H 1.08001 * 119.99814 * 359.97438 * 12 9 8 14 14 C 1.37874 * 120.00016 * 179.97438 * 12 9 8 15 15 N 1.31514 * 120.00075 * 359.97438 * 14 12 9 16 16 Si 1.86800 * 119.99918 * 179.97438 * 14 12 9 17 17 H 1.48495 * 109.46983 * 60.00493 * 16 14 12 18 18 H 1.48504 * 109.46934 * 180.02562 * 16 14 12 19 19 H 1.48494 * 109.47556 * 300.00049 * 16 14 12 20 20 H 1.09006 * 109.46779 * 60.00392 * 1 2 3 21 21 H 1.09006 * 109.47036 * 179.97438 * 1 2 3 22 22 H 1.08998 * 109.47364 * 300.00521 * 1 2 3 23 23 H 1.09005 * 109.47078 * 120.00065 * 2 1 3 24 24 H 1.08998 * 109.47364 * 239.99479 * 2 1 3 25 25 H 1.09006 * 109.47015 * 299.99464 * 3 2 1 26 26 H 1.08998 * 109.47467 * 59.99542 * 3 2 1 27 27 H 1.08000 * 125.64636 * 359.97438 * 5 4 3 28 28 H 1.08000 * 125.98583 * 179.72324 * 7 6 5 29 29 H 0.96700 * 114.00566 * 294.53399 * 11 9 8 30 30 H 0.96998 * 120.00300 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5050 1.4424 0.0006 5 6 4.3059 1.5277 1.0846 6 7 5.5493 1.4928 0.6899 7 6 5.5863 1.3950 -0.6473 8 6 4.3177 1.3621 -1.0979 9 6 3.8774 1.2575 -2.5354 10 1 2.8789 0.8227 -2.5788 11 8 4.7907 0.4261 -3.2540 12 6 3.8546 2.6311 -3.1549 13 1 4.1309 3.4935 -2.5664 14 6 3.4811 2.7868 -4.4729 15 7 3.1451 1.7366 -5.1896 16 14 3.4521 4.4895 -5.2406 17 1 4.8122 5.0826 -5.1808 18 1 3.0184 4.3865 -6.6571 19 1 2.5023 5.3531 -4.4942 20 1 -0.3633 0.5138 -0.8901 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3634 0.5139 0.8899 23 1 1.8933 -0.5139 0.8900 24 1 1.8934 -0.5139 -0.8899 25 1 1.6767 1.9563 -0.8901 26 1 1.6766 1.9563 0.8899 27 1 3.9725 1.6086 2.1087 28 1 6.4774 1.3504 -1.2558 29 1 5.6821 0.7936 -3.3287 30 1 2.8826 1.8460 -6.1170 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000085879705.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:41 Heat of formation + Delta-G solvation = -24.705845 kcal Electronic energy + Delta-G solvation = -14048.536097 eV Core-core repulsion = 11650.630230 eV Total energy + Delta-G solvation = -2397.905867 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.111 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -42.88653 -37.62050 -36.51478 -34.33377 -32.86370 -31.15154 -28.27841 -27.20070 -24.87294 -22.86473 -22.09720 -20.70888 -19.15142 -18.19019 -16.76908 -16.33130 -16.19909 -15.95885 -15.38481 -14.85015 -14.51205 -14.24548 -14.01666 -13.48477 -13.12637 -12.99915 -12.87266 -12.80842 -12.32086 -12.15663 -11.77702 -11.55353 -10.89103 -10.83477 -10.46205 -10.30412 -9.13461 -8.18456 -6.47120 1.27576 1.39739 1.42128 1.50069 2.03535 2.29429 2.39973 3.05752 3.79220 3.89643 3.91953 4.05015 4.24507 4.33406 4.42766 4.56643 4.63193 4.81610 4.84973 5.04844 5.10464 5.29797 5.34853 5.58165 5.76787 5.86141 5.98008 6.51549 6.61732 7.20296 7.26091 7.39945 8.83382 Molecular weight = 210.11amu Principal moments of inertia in cm(-1) A = 0.026640 B = 0.011169 C = 0.009439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1050.812436 B = 2506.433576 C = 2965.647254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.132 4.132 3 C 0.101 3.899 4 N -0.454 5.454 5 C 0.167 3.833 6 N -0.528 5.528 7 C -0.064 4.064 8 C -0.021 4.021 9 C 0.304 3.696 10 H 0.035 0.965 11 O -0.571 6.571 12 C -0.575 4.575 13 H 0.049 0.951 14 C 0.035 3.965 15 N -0.893 5.893 16 Si 0.960 3.040 17 H -0.271 1.271 18 H -0.280 1.280 19 H -0.269 1.269 20 H 0.049 0.951 21 H 0.067 0.933 22 H 0.081 0.919 23 H 0.078 0.922 24 H 0.035 0.965 25 H 0.073 0.927 26 H 0.129 0.871 27 H 0.244 0.756 28 H 0.161 0.839 29 H 0.362 0.638 30 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.203 -0.042 9.944 11.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.170 4.170 3 C -0.021 4.021 4 N -0.138 5.138 5 C -0.114 4.114 6 N -0.247 5.247 7 C -0.210 4.210 8 C -0.137 4.137 9 C 0.245 3.755 10 H 0.052 0.948 11 O -0.374 6.374 12 C -0.613 4.613 13 H 0.068 0.932 14 C -0.169 4.169 15 N -0.529 5.529 16 Si 0.784 3.216 17 H -0.196 1.196 18 H -0.205 1.205 19 H -0.194 1.194 20 H 0.068 0.932 21 H 0.086 0.914 22 H 0.100 0.900 23 H 0.097 0.903 24 H 0.054 0.946 25 H 0.092 0.908 26 H 0.147 0.853 27 H 0.260 0.740 28 H 0.178 0.822 29 H 0.208 0.792 30 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -5.257 -0.478 10.230 11.512 hybrid contribution -0.068 1.017 -1.257 1.618 sum -5.325 0.539 8.974 10.449 Atomic orbital electron populations 1.21660 0.92483 1.02979 1.02834 1.21817 0.98266 0.94926 1.01989 1.22148 0.75270 0.99267 1.05380 1.45529 1.08286 1.53816 1.06159 1.25595 0.85172 1.05925 0.94720 1.70113 1.21247 1.21494 1.11805 1.21889 0.96176 1.11469 0.91443 1.22736 0.92028 1.06874 0.92093 1.17441 0.88339 0.89793 0.79885 0.94756 1.86486 1.23861 1.49465 1.77592 1.21663 1.49273 0.93141 0.97181 0.93239 1.25813 0.93161 1.00476 0.97415 1.70171 1.42904 1.31016 1.08833 0.85606 0.78908 0.79664 0.77411 1.19556 1.20480 1.19364 0.93187 0.91378 0.90017 0.90331 0.94605 0.90819 0.85312 0.73996 0.82204 0.79167 0.92505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.86 9.91 71.98 0.71 -2.14 16 2 C -0.13 -3.46 6.26 30.59 0.19 -3.27 16 3 C 0.10 2.90 5.73 86.38 0.49 3.39 16 4 N -0.45 -16.53 2.75 -514.55 -1.42 -17.95 16 5 C 0.17 5.55 12.56 180.26 2.26 7.81 16 6 N -0.53 -21.34 11.25 -200.31 -2.25 -23.59 16 7 C -0.06 -2.82 11.30 83.52 0.94 -1.87 16 8 C -0.02 -0.94 5.95 40.95 0.24 -0.70 16 9 C 0.30 15.75 3.03 29.10 0.09 15.84 16 10 H 0.03 1.94 7.61 -2.39 -0.02 1.92 16 11 O -0.57 -30.20 12.57 -148.98 -1.87 -32.07 16 12 C -0.57 -31.35 8.70 25.60 0.22 -31.13 16 13 H 0.05 2.73 7.74 -2.91 -0.02 2.71 16 14 C 0.04 1.90 5.40 84.65 0.46 2.36 16 15 N -0.89 -51.48 12.84 21.45 0.28 -51.21 16 16 Si 0.96 42.51 29.54 68.60 2.03 44.53 16 17 H -0.27 -11.77 7.11 99.48 0.71 -11.07 16 18 H -0.28 -12.05 7.11 99.48 0.71 -11.35 16 19 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 20 H 0.05 1.12 8.14 -2.38 -0.02 1.10 16 21 H 0.07 1.25 8.14 -2.38 -0.02 1.23 16 22 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 23 H 0.08 1.83 8.14 -2.38 -0.02 1.81 16 24 H 0.04 1.21 8.02 -2.39 -0.02 1.19 16 25 H 0.07 2.50 7.90 -2.38 -0.02 2.48 16 26 H 0.13 2.54 8.13 -2.39 -0.02 2.52 16 27 H 0.24 5.19 8.06 -2.91 -0.02 5.16 16 28 H 0.16 6.70 7.74 -2.91 -0.02 6.68 16 29 H 0.36 17.20 8.44 -74.06 -0.63 16.57 16 30 H 0.27 14.48 8.31 -92.71 -0.77 13.71 16 Total: -1.00 -67.80 263.64 2.88 -64.92 By element: Atomic # 1 Polarization: 24.57 SS G_CDS: 0.50 Total: 25.08 kcal Atomic # 6 Polarization: -15.33 SS G_CDS: 5.62 Total: -9.71 kcal Atomic # 7 Polarization: -89.35 SS G_CDS: -3.39 Total: -92.74 kcal Atomic # 8 Polarization: -30.20 SS G_CDS: -1.87 Total: -32.07 kcal Atomic # 14 Polarization: 42.51 SS G_CDS: 2.03 Total: 44.53 kcal Total: -67.80 2.88 -64.92 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085879705.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.213 kcal (2) G-P(sol) polarization free energy of solvation -67.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.919 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds