Wall clock time and date at job start Mon Mar 30 2020 02:29:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46498 * 109.46942 * 2 1 4 4 C 1.38697 * 125.98176 * 269.95713 * 3 2 1 5 5 C 1.32868 * 107.91455 * 179.76456 * 4 3 2 6 6 N 1.38691 * 107.91091 * 0.42956 * 5 4 3 7 7 C 1.46505 * 125.98313 * 179.82812 * 6 5 4 8 8 C 1.52997 * 109.47212 * 269.69100 * 7 6 5 9 9 C 1.50697 * 109.47466 * 179.97438 * 8 7 6 10 10 H 1.08001 * 119.99890 * 0.02562 * 9 8 7 11 11 C 1.37876 * 120.00428 * 179.97438 * 9 8 7 12 12 N 1.31517 * 120.00362 * 180.02562 * 11 9 8 13 13 Si 1.86804 * 119.99850 * 359.97438 * 11 9 8 14 14 H 1.48504 * 109.47052 * 89.99717 * 13 11 9 15 15 H 1.48495 * 109.47307 * 209.99656 * 13 11 9 16 16 H 1.48500 * 109.47143 * 330.00164 * 13 11 9 17 17 C 1.34755 * 125.98696 * 89.99981 * 3 2 1 18 18 O 1.21802 * 125.94308 * 359.97438 * 17 3 2 19 19 H 1.09002 * 109.47114 * 179.97438 * 1 2 3 20 20 H 1.09000 * 109.47230 * 299.99934 * 1 2 3 21 21 H 1.09003 * 109.47085 * 60.00255 * 1 2 3 22 22 H 1.09000 * 109.47230 * 240.00066 * 2 1 3 23 23 H 1.08999 * 109.46739 * 120.00082 * 2 1 3 24 24 H 1.08001 * 126.04505 * 0.03280 * 4 3 2 25 25 H 1.07999 * 126.04401 * 180.27339 * 5 4 3 26 26 H 1.09002 * 109.47068 * 29.69160 * 7 6 5 27 27 H 1.09001 * 109.47372 * 149.69248 * 7 6 5 28 28 H 1.09002 * 109.47153 * 300.00008 * 8 7 6 29 29 H 1.08998 * 109.47533 * 59.99637 * 8 7 6 30 30 H 0.96994 * 119.99814 * 180.02562 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2907 2.1492 -1.1223 5 6 2.7065 3.3420 -0.7103 6 7 2.7105 3.3366 0.6766 7 6 3.1051 4.4520 1.5406 8 6 4.6022 4.3588 1.8419 9 6 5.0084 5.5065 2.7301 10 1 4.2722 6.2298 3.0483 11 6 6.3195 5.6326 3.1375 12 7 6.6738 6.6339 3.9130 13 14 7.5925 4.3803 2.5890 14 1 8.2066 4.8254 1.3122 15 1 8.6458 4.2573 3.6284 16 1 6.9370 3.0627 2.3901 17 6 2.2822 2.1278 1.0904 18 8 2.1559 1.7717 2.2483 19 1 -0.3633 -1.0277 -0.0005 20 1 -0.3634 0.5138 0.8900 21 1 -0.3633 0.5138 -0.8900 22 1 1.8934 -0.5138 -0.8900 23 1 1.8933 -0.5138 0.8900 24 1 2.1799 1.8349 -2.1497 25 1 2.9934 4.1686 -1.3434 26 1 2.8941 5.3948 1.0359 27 1 2.5432 4.4055 2.4735 28 1 4.8133 3.4160 2.3466 29 1 5.1643 4.4053 0.9092 30 1 7.5963 6.7227 4.1993 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000087666403.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:29 Heat of formation + Delta-G solvation = 10.292943 kcal Electronic energy + Delta-G solvation = -13720.253101 eV Core-core repulsion = 11323.864894 eV Total energy + Delta-G solvation = -2396.388206 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.111 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -41.84577 -36.28239 -35.84573 -33.44438 -31.86406 -29.64582 -28.25982 -25.40240 -23.42693 -21.68798 -20.86203 -19.72683 -17.37481 -16.63988 -15.86789 -15.22520 -14.87080 -14.26088 -14.10242 -13.78252 -13.28965 -13.09621 -12.81959 -12.56673 -12.13027 -11.84747 -11.32748 -11.20737 -11.03589 -10.62606 -10.12320 -9.96906 -9.73000 -9.31661 -9.23913 -8.57647 -7.33781 -6.08634 -4.08299 2.51849 2.65888 3.29411 3.36797 3.38526 3.44607 3.88531 4.43283 4.75156 5.05825 5.16137 5.25299 5.27829 5.43437 5.61576 5.67057 5.73143 5.89189 6.01978 6.18795 6.44021 6.47943 6.78806 7.09396 7.25959 7.32988 7.71442 7.84748 8.44205 8.78695 8.93583 9.52936 11.04231 Molecular weight = 210.11amu Principal moments of inertia in cm(-1) A = 0.051784 B = 0.007387 C = 0.007313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 540.574782 B = 3789.550414 C = 3827.800589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.130 3.870 3 N -0.539 5.539 4 C -0.039 4.039 5 C 0.004 3.996 6 N -0.528 5.528 7 C 0.140 3.860 8 C -0.024 4.024 9 C -0.523 4.523 10 H 0.076 0.924 11 C 0.072 3.928 12 N -0.899 5.899 13 Si 0.879 3.121 14 H -0.276 1.276 15 H -0.286 1.286 16 H -0.266 1.266 17 C 0.643 3.357 18 O -0.575 6.575 19 H 0.069 0.931 20 H 0.061 0.939 21 H 0.059 0.941 22 H 0.084 0.916 23 H 0.087 0.913 24 H 0.174 0.826 25 H 0.177 0.823 26 H 0.083 0.917 27 H 0.084 0.916 28 H 0.023 0.977 29 H 0.016 0.984 30 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.481 -10.624 -13.110 19.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.008 3.992 3 N -0.261 5.261 4 C -0.162 4.162 5 C -0.121 4.121 6 N -0.245 5.245 7 C 0.020 3.980 8 C -0.063 4.063 9 C -0.561 4.561 10 H 0.094 0.906 11 C -0.130 4.130 12 N -0.538 5.538 13 Si 0.706 3.294 14 H -0.202 1.202 15 H -0.212 1.212 16 H -0.191 1.191 17 C 0.346 3.654 18 O -0.454 6.454 19 H 0.088 0.912 20 H 0.081 0.919 21 H 0.078 0.922 22 H 0.102 0.898 23 H 0.105 0.895 24 H 0.191 0.809 25 H 0.194 0.806 26 H 0.101 0.899 27 H 0.102 0.898 28 H 0.041 0.959 29 H 0.034 0.966 30 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -9.418 -10.790 -12.109 18.755 hybrid contribution 0.845 -0.509 -0.392 1.061 sum -8.573 -11.299 -12.500 18.906 Atomic orbital electron populations 1.22165 0.95278 1.02366 1.02852 1.21401 0.94632 0.79527 1.03635 1.45400 1.60850 1.13502 1.06331 1.21572 1.10612 0.91388 0.92599 1.21843 1.06792 0.99298 0.84217 1.45883 1.58305 1.13858 1.06493 1.21821 0.98724 0.84589 0.92860 1.19915 0.90663 0.98571 0.97105 1.20908 0.95507 1.09706 1.29989 0.90631 1.24948 0.98399 0.95240 0.94421 1.69899 1.18242 1.30486 1.35148 0.86781 0.81330 0.82748 0.78515 1.20191 1.21177 1.19065 1.16341 0.82663 0.81604 0.84817 1.91013 1.62802 1.75396 1.16170 0.91203 0.91944 0.92233 0.89768 0.89506 0.80895 0.80584 0.89888 0.89780 0.95898 0.96551 0.92567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.64 10.24 37.16 0.38 -1.26 16 2 C 0.13 1.47 6.76 -4.04 -0.03 1.44 16 3 N -0.54 -8.11 2.78 -121.40 -0.34 -8.45 16 4 C -0.04 -0.47 11.49 -16.29 -0.19 -0.66 16 5 C 0.00 0.05 11.49 -16.30 -0.19 -0.13 16 6 N -0.53 -9.93 2.78 -121.40 -0.34 -10.27 16 7 C 0.14 2.91 5.98 -4.04 -0.02 2.89 16 8 C -0.02 -0.60 4.37 -27.89 -0.12 -0.73 16 9 C -0.52 -15.01 9.66 -34.44 -0.33 -15.34 16 10 H 0.08 2.28 7.99 -52.49 -0.42 1.86 16 11 C 0.07 2.12 5.47 -17.82 -0.10 2.02 16 12 N -0.90 -27.85 13.96 55.43 0.77 -27.07 16 13 Si 0.88 22.29 27.47 -169.99 -4.67 17.62 16 14 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 15 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 16 H -0.27 -6.74 6.54 56.52 0.37 -6.37 16 17 C 0.64 12.90 8.52 -86.95 -0.74 12.16 16 18 O -0.58 -13.81 17.64 5.10 0.09 -13.72 16 19 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 20 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 21 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 22 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 23 H 0.09 1.08 8.07 -51.93 -0.42 0.66 16 24 H 0.17 1.34 8.06 -52.49 -0.42 0.92 16 25 H 0.18 1.89 8.06 -52.49 -0.42 1.47 16 26 H 0.08 1.53 8.14 -51.93 -0.42 1.11 16 27 H 0.08 1.85 8.07 -51.93 -0.42 1.43 16 28 H 0.02 0.61 7.20 -51.93 -0.37 0.24 16 29 H 0.02 0.39 7.57 -51.93 -0.39 0.00 16 30 H 0.26 7.65 8.31 -40.82 -0.34 7.32 16 LS Contribution 263.39 15.07 3.97 3.97 Total: -1.00 -35.21 263.39 -6.00 -41.21 By element: Atomic # 1 Polarization: 0.47 SS G_CDS: -4.15 Total: -3.68 kcal Atomic # 6 Polarization: 1.73 SS G_CDS: -1.34 Total: 0.40 kcal Atomic # 7 Polarization: -45.89 SS G_CDS: 0.10 Total: -45.79 kcal Atomic # 8 Polarization: -13.81 SS G_CDS: 0.09 Total: -13.72 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -4.67 Total: 17.62 kcal Total LS contribution 3.97 Total: 3.97 kcal Total: -35.21 -6.00 -41.21 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087666403.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.498 kcal (2) G-P(sol) polarization free energy of solvation -35.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.205 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds