Wall clock time and date at job start Mon Mar 30 2020 02:29:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46498 * 109.46942 * 2 1 4 4 C 1.38697 * 125.98176 * 269.95713 * 3 2 1 5 5 C 1.32868 * 107.91455 * 179.76456 * 4 3 2 6 6 N 1.38691 * 107.91091 * 0.42956 * 5 4 3 7 7 C 1.46505 * 125.98313 * 179.82812 * 6 5 4 8 8 C 1.52997 * 109.47212 * 269.69100 * 7 6 5 9 9 C 1.50697 * 109.47466 * 179.97438 * 8 7 6 10 10 H 1.08001 * 119.99890 * 0.02562 * 9 8 7 11 11 C 1.37876 * 120.00428 * 179.97438 * 9 8 7 12 12 N 1.31517 * 120.00362 * 180.02562 * 11 9 8 13 13 Si 1.86804 * 119.99850 * 359.97438 * 11 9 8 14 14 H 1.48504 * 109.47052 * 89.99717 * 13 11 9 15 15 H 1.48495 * 109.47307 * 209.99656 * 13 11 9 16 16 H 1.48500 * 109.47143 * 330.00164 * 13 11 9 17 17 C 1.34755 * 125.98696 * 89.99981 * 3 2 1 18 18 O 1.21802 * 125.94308 * 359.97438 * 17 3 2 19 19 H 1.09002 * 109.47114 * 179.97438 * 1 2 3 20 20 H 1.09000 * 109.47230 * 299.99934 * 1 2 3 21 21 H 1.09003 * 109.47085 * 60.00255 * 1 2 3 22 22 H 1.09000 * 109.47230 * 240.00066 * 2 1 3 23 23 H 1.08999 * 109.46739 * 120.00082 * 2 1 3 24 24 H 1.08001 * 126.04505 * 0.03280 * 4 3 2 25 25 H 1.07999 * 126.04401 * 180.27339 * 5 4 3 26 26 H 1.09002 * 109.47068 * 29.69160 * 7 6 5 27 27 H 1.09001 * 109.47372 * 149.69248 * 7 6 5 28 28 H 1.09002 * 109.47153 * 300.00008 * 8 7 6 29 29 H 1.08998 * 109.47533 * 59.99637 * 8 7 6 30 30 H 0.96994 * 119.99814 * 180.02562 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2907 2.1492 -1.1223 5 6 2.7065 3.3420 -0.7103 6 7 2.7105 3.3366 0.6766 7 6 3.1051 4.4520 1.5406 8 6 4.6022 4.3588 1.8419 9 6 5.0084 5.5065 2.7301 10 1 4.2722 6.2298 3.0483 11 6 6.3195 5.6326 3.1375 12 7 6.6738 6.6339 3.9130 13 14 7.5925 4.3803 2.5890 14 1 8.2066 4.8254 1.3122 15 1 8.6458 4.2573 3.6284 16 1 6.9370 3.0627 2.3901 17 6 2.2822 2.1278 1.0904 18 8 2.1559 1.7717 2.2483 19 1 -0.3633 -1.0277 -0.0005 20 1 -0.3634 0.5138 0.8900 21 1 -0.3633 0.5138 -0.8900 22 1 1.8934 -0.5138 -0.8900 23 1 1.8933 -0.5138 0.8900 24 1 2.1799 1.8349 -2.1497 25 1 2.9934 4.1686 -1.3434 26 1 2.8941 5.3948 1.0359 27 1 2.5432 4.4055 2.4735 28 1 4.8133 3.4160 2.3466 29 1 5.1643 4.4053 0.9092 30 1 7.5963 6.7227 4.1993 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000087666403.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:28 Heat of formation + Delta-G solvation = -13.215024 kcal Electronic energy + Delta-G solvation = -13721.272482 eV Core-core repulsion = 11323.864894 eV Total energy + Delta-G solvation = -2397.407588 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.111 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -43.12824 -37.80822 -37.21210 -35.30150 -33.52343 -31.18667 -29.45302 -27.15938 -24.59499 -23.20404 -22.33673 -21.14441 -19.22747 -18.16073 -17.30178 -16.51808 -16.33872 -16.18370 -15.39680 -14.94075 -14.82787 -14.69149 -14.25049 -13.86718 -13.65031 -13.00267 -12.93715 -12.88986 -12.22599 -12.10596 -12.03187 -11.88945 -11.58931 -11.30167 -10.83004 -10.65532 -8.59941 -8.35989 -6.41365 1.28677 1.33119 1.38335 1.44701 1.52233 1.89246 2.30286 2.72217 2.98763 3.83541 4.09689 4.22057 4.34564 4.38813 4.44264 4.52349 4.66402 4.71213 4.81624 4.90071 5.10412 5.15107 5.24258 5.42003 5.47625 5.62832 6.07322 6.17231 6.61549 6.64902 7.23435 7.35514 8.80107 Molecular weight = 210.11amu Principal moments of inertia in cm(-1) A = 0.051784 B = 0.007387 C = 0.007313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 540.574782 B = 3789.550414 C = 3827.800589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.120 3.880 3 N -0.533 5.533 4 C -0.008 4.008 5 C -0.027 4.027 6 N -0.537 5.537 7 C 0.152 3.848 8 C -0.013 4.013 9 C -0.534 4.534 10 H 0.045 0.955 11 C 0.014 3.986 12 N -0.942 5.942 13 Si 0.947 3.053 14 H -0.253 1.253 15 H -0.280 1.280 16 H -0.268 1.268 17 C 0.614 3.386 18 O -0.635 6.635 19 H 0.097 0.903 20 H 0.027 0.973 21 H 0.075 0.925 22 H 0.130 0.870 23 H 0.066 0.934 24 H 0.231 0.769 25 H 0.210 0.790 26 H 0.108 0.892 27 H 0.058 0.942 28 H -0.004 1.004 29 H 0.032 0.968 30 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.355 -12.203 -16.638 22.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.001 4.001 3 N -0.252 5.252 4 C -0.130 4.130 5 C -0.149 4.149 6 N -0.254 5.254 7 C 0.030 3.970 8 C -0.051 4.051 9 C -0.572 4.572 10 H 0.063 0.937 11 C -0.184 4.184 12 N -0.582 5.582 13 Si 0.771 3.229 14 H -0.177 1.177 15 H -0.206 1.206 16 H -0.193 1.193 17 C 0.316 3.684 18 O -0.519 6.519 19 H 0.115 0.885 20 H 0.046 0.954 21 H 0.094 0.906 22 H 0.148 0.852 23 H 0.084 0.916 24 H 0.248 0.752 25 H 0.227 0.773 26 H 0.126 0.874 27 H 0.076 0.924 28 H 0.015 0.985 29 H 0.051 0.949 30 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -9.312 -12.381 -15.720 22.071 hybrid contribution 0.715 -0.029 0.677 0.985 sum -8.597 -12.411 -15.043 21.312 Atomic orbital electron populations 1.22113 0.93999 1.03893 1.01858 1.21800 0.95705 0.77692 1.04868 1.45650 1.59329 1.14476 1.05793 1.22516 1.06930 0.89804 0.93743 1.22572 1.08685 1.01665 0.81943 1.45754 1.58312 1.12915 1.08443 1.21424 0.95761 0.86695 0.93084 1.19733 0.93583 0.95369 0.96438 1.21207 0.95163 1.10257 1.30587 0.93686 1.25860 1.00784 0.97244 0.94484 1.70028 1.19116 1.32488 1.36589 0.85710 0.78456 0.79655 0.79106 1.17715 1.20566 1.19319 1.16764 0.83802 0.82567 0.85264 1.90940 1.65415 1.76687 1.18844 0.88473 0.95379 0.90644 0.85206 0.91558 0.75230 0.77296 0.87376 0.92370 0.98522 0.94936 0.92162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.72 10.24 71.98 0.74 -1.99 16 2 C 0.12 2.38 6.76 86.38 0.58 2.96 16 3 N -0.53 -14.77 2.78 -656.19 -1.82 -16.60 16 4 C -0.01 -0.16 11.49 82.43 0.95 0.79 16 5 C -0.03 -0.66 11.49 82.43 0.95 0.29 16 6 N -0.54 -19.81 2.78 -656.19 -1.82 -21.64 16 7 C 0.15 6.41 5.98 86.38 0.52 6.92 16 8 C -0.01 -0.65 4.37 29.85 0.13 -0.52 16 9 C -0.53 -31.43 9.66 25.60 0.25 -31.19 16 10 H 0.04 2.84 7.99 -2.91 -0.02 2.82 16 11 C 0.01 0.86 5.47 84.65 0.46 1.32 16 12 N -0.94 -59.46 13.96 21.45 0.30 -59.16 16 13 Si 0.95 45.94 27.47 68.60 1.88 47.83 16 14 H -0.25 -11.29 7.11 99.48 0.71 -10.58 16 15 H -0.28 -13.25 7.11 99.48 0.71 -12.54 16 16 H -0.27 -13.04 6.54 99.48 0.65 -12.39 16 17 C 0.61 24.73 8.52 179.07 1.53 26.26 16 18 O -0.64 -32.02 17.64 -4.67 -0.08 -32.10 16 19 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16 20 H 0.03 0.66 8.14 -2.39 -0.02 0.64 16 21 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 22 H 0.13 1.44 8.14 -2.39 -0.02 1.42 16 23 H 0.07 1.61 8.07 -2.39 -0.02 1.59 16 24 H 0.23 1.82 8.06 -2.91 -0.02 1.80 16 25 H 0.21 3.56 8.06 -2.91 -0.02 3.54 16 26 H 0.11 3.95 8.14 -2.39 -0.02 3.93 16 27 H 0.06 2.71 8.07 -2.39 -0.02 2.69 16 28 H 0.00 -0.20 7.20 -2.39 -0.02 -0.22 16 29 H 0.03 1.51 7.57 -2.39 -0.02 1.49 16 30 H 0.27 15.78 8.31 -92.71 -0.77 15.01 16 Total: -1.00 -81.10 263.39 5.61 -75.49 By element: Atomic # 1 Polarization: 0.28 SS G_CDS: 1.05 Total: 1.33 kcal Atomic # 6 Polarization: -1.25 SS G_CDS: 6.10 Total: 4.85 kcal Atomic # 7 Polarization: -94.05 SS G_CDS: -3.35 Total: -97.39 kcal Atomic # 8 Polarization: -32.02 SS G_CDS: -0.08 Total: -32.10 kcal Atomic # 14 Polarization: 45.94 SS G_CDS: 1.88 Total: 47.83 kcal Total: -81.10 5.61 -75.49 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087666403.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.273 kcal (2) G-P(sol) polarization free energy of solvation -81.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.488 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds