Wall clock time and date at job start Mon Mar 30 2020 02:33:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.38703 * 125.98278 * 2 1 4 4 C 1.32859 * 107.91431 * 180.02562 * 3 2 1 5 5 N 1.38697 * 107.91712 * 359.97438 * 4 3 2 6 6 C 1.46500 * 125.98339 * 180.02562 * 5 4 3 7 7 C 1.52995 * 109.47107 * 89.97738 * 6 5 4 8 8 C 1.53002 * 109.47096 * 180.02562 * 7 6 5 9 9 C 1.50692 * 109.47345 * 180.02562 * 8 7 6 10 10 H 1.08006 * 120.00276 * 359.97438 * 9 8 7 11 11 C 1.37880 * 120.00362 * 180.02562 * 9 8 7 12 12 N 1.31509 * 119.99899 * 359.97438 * 11 9 8 13 13 Si 1.86801 * 120.00124 * 179.97438 * 11 9 8 14 14 H 1.48502 * 109.47179 * 359.97438 * 13 11 9 15 15 H 1.48495 * 109.47336 * 119.99350 * 13 11 9 16 16 H 1.48499 * 109.46695 * 239.99333 * 13 11 9 17 17 C 1.34756 * 108.03012 * 359.74145 * 5 4 3 18 18 O 1.21796 * 125.94579 * 180.26562 * 17 5 4 19 19 H 1.09002 * 109.47391 * 0.02562 * 1 2 3 20 20 H 1.09001 * 109.46813 * 240.02618 * 1 2 3 21 21 H 1.09004 * 109.47041 * 120.02745 * 1 2 3 22 22 H 1.07996 * 126.04030 * 359.97438 * 3 2 1 23 23 H 1.08004 * 126.04027 * 179.97438 * 4 3 2 24 24 H 1.09005 * 109.46782 * 209.97566 * 6 5 4 25 25 H 1.09001 * 109.47148 * 329.97017 * 6 5 4 26 26 H 1.09005 * 109.47159 * 299.99596 * 7 6 5 27 27 H 1.08993 * 109.47456 * 59.99781 * 7 6 5 28 28 H 1.09005 * 109.46655 * 299.99743 * 8 7 6 29 29 H 1.08993 * 109.47280 * 59.99510 * 8 7 6 30 30 H 0.96997 * 120.00327 * 180.02562 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2799 1.1224 0.0000 4 6 3.5430 0.7103 -0.0006 5 7 3.5393 -0.6767 -0.0003 6 6 4.7225 -1.5406 -0.0003 7 6 5.1348 -1.8406 1.4422 8 6 6.3709 -2.7423 1.4423 9 6 6.7766 -3.0384 2.8630 10 1 6.2099 -2.6244 3.6840 11 6 7.8721 -3.8368 3.1151 12 7 8.5626 -4.3405 2.1156 13 14 8.3754 -4.2032 4.8763 14 1 7.4426 -3.5221 5.8096 15 1 8.3277 -5.6689 5.1101 16 1 9.7564 -3.7095 5.1092 17 6 2.2569 -1.0904 0.0062 18 8 1.8792 -2.2483 0.0128 19 1 -0.3634 1.0277 -0.0005 20 1 -0.3633 -0.5134 0.8902 21 1 -0.3633 -0.5143 -0.8898 22 1 1.9466 2.1496 -0.0004 23 1 4.4180 1.3435 -0.0011 24 1 4.4909 -2.4739 -0.5136 25 1 5.5406 -1.0363 -0.5147 26 1 5.3664 -0.9073 1.9555 27 1 4.3168 -2.3448 1.9566 28 1 6.1397 -3.6756 0.9289 29 1 7.1888 -2.2377 0.9281 30 1 9.3330 -4.9025 2.2928 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000087666408.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:03 Heat of formation + Delta-G solvation = 6.430437 kcal Electronic energy + Delta-G solvation = -13444.163595 eV Core-core repulsion = 11047.607898 eV Total energy + Delta-G solvation = -2396.555697 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.111 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.97710 -36.45273 -35.78980 -33.62390 -31.76751 -29.39392 -27.31406 -26.14150 -23.38879 -21.66016 -20.58310 -19.94166 -17.35237 -16.25026 -16.11686 -15.37187 -14.85384 -14.48550 -14.08922 -13.77951 -13.55780 -13.20911 -12.46064 -12.45706 -12.10632 -11.44262 -11.38979 -10.85421 -10.84404 -10.57913 -10.06960 -9.78928 -9.73011 -9.31210 -9.03882 -8.34907 -7.49904 -5.99739 -4.01876 2.37692 2.50645 3.21002 3.32344 3.39696 3.44427 3.71956 4.47378 4.77642 5.14988 5.26260 5.35572 5.37322 5.41464 5.49107 5.70690 5.82810 6.04906 6.16108 6.51243 6.65924 6.79161 7.03037 7.13514 7.63638 7.65635 7.79089 7.99216 8.41874 8.61344 9.04498 9.62192 11.11729 Molecular weight = 210.11amu Principal moments of inertia in cm(-1) A = 0.058971 B = 0.005823 C = 0.005769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 474.693902 B = 4807.257892 C = 4852.444774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.107 3.893 2 N -0.543 5.543 3 C -0.034 4.034 4 C 0.001 3.999 5 N -0.528 5.528 6 C 0.127 3.873 7 C -0.124 4.124 8 C 0.024 3.976 9 C -0.519 4.519 10 H 0.055 0.945 11 C 0.057 3.943 12 N -0.895 5.895 13 Si 0.893 3.107 14 H -0.273 1.273 15 H -0.284 1.284 16 H -0.284 1.284 17 C 0.643 3.357 18 O -0.573 6.573 19 H 0.083 0.917 20 H 0.069 0.931 21 H 0.068 0.932 22 H 0.176 0.824 23 H 0.178 0.822 24 H 0.086 0.914 25 H 0.085 0.915 26 H 0.053 0.947 27 H 0.054 0.946 28 H 0.019 0.981 29 H 0.018 0.982 30 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.783 13.010 -5.291 18.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.035 4.035 2 N -0.265 5.265 3 C -0.157 4.157 4 C -0.124 4.124 5 N -0.246 5.246 6 C 0.007 3.993 7 C -0.162 4.162 8 C -0.014 4.014 9 C -0.557 4.557 10 H 0.073 0.927 11 C -0.144 4.144 12 N -0.535 5.535 13 Si 0.721 3.279 14 H -0.198 1.198 15 H -0.210 1.210 16 H -0.210 1.210 17 C 0.345 3.655 18 O -0.452 6.452 19 H 0.102 0.898 20 H 0.087 0.913 21 H 0.087 0.913 22 H 0.194 0.806 23 H 0.196 0.804 24 H 0.104 0.896 25 H 0.104 0.896 26 H 0.071 0.929 27 H 0.073 0.927 28 H 0.038 0.962 29 H 0.037 0.963 30 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -11.915 12.006 -5.338 17.737 hybrid contribution 0.393 -0.086 0.990 1.069 sum -11.523 11.920 -4.348 17.139 Atomic orbital electron populations 1.21597 0.75882 1.03008 1.03009 1.45228 1.06994 1.06385 1.67853 1.21654 0.88801 0.92590 1.12693 1.21847 0.98204 0.83984 1.08319 1.45719 1.07002 1.06490 1.65359 1.21945 0.83181 0.93543 1.00640 1.22028 1.00722 1.00809 0.92639 1.19052 0.90734 0.94122 0.97493 1.21242 1.11963 1.30139 0.92376 0.92656 1.25015 0.96448 0.95859 0.97109 1.69966 1.19007 1.33926 1.30588 0.86523 0.78328 0.78089 0.85002 1.19762 1.20964 1.20994 1.16307 0.81314 0.84804 0.83026 1.91031 1.77432 1.16149 1.60552 0.89845 0.91265 0.91343 0.80640 0.80437 0.89563 0.89628 0.92873 0.92734 0.96233 0.96318 0.93023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.04 11.09 59.85 0.66 1.70 16 2 N -0.54 -7.43 3.18 -128.85 -0.41 -7.84 16 3 C -0.03 -0.37 11.45 -16.29 -0.19 -0.55 16 4 C 0.00 0.02 11.49 -16.30 -0.19 -0.17 16 5 N -0.53 -8.82 2.78 -121.41 -0.34 -9.16 16 6 C 0.13 2.29 6.04 -4.04 -0.02 2.27 16 7 C -0.12 -2.66 5.48 -26.73 -0.15 -2.80 16 8 C 0.02 0.62 4.97 -27.89 -0.14 0.48 16 9 C -0.52 -15.00 9.11 -34.44 -0.31 -15.32 16 10 H 0.06 1.57 7.74 -52.48 -0.41 1.17 16 11 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 12 N -0.90 -27.14 13.29 55.43 0.74 -26.40 16 13 Si 0.89 22.00 29.54 -169.99 -5.02 16.98 16 14 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 15 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 16 H -0.28 -6.86 7.11 56.52 0.40 -6.45 16 17 C 0.64 11.85 8.52 -86.95 -0.74 11.11 16 18 O -0.57 -12.91 17.70 5.10 0.09 -12.82 16 19 H 0.08 0.50 8.08 -51.93 -0.42 0.08 16 20 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 21 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 22 H 0.18 1.11 8.06 -52.49 -0.42 0.68 16 23 H 0.18 1.60 8.06 -52.48 -0.42 1.18 16 24 H 0.09 1.65 8.08 -51.93 -0.42 1.23 16 25 H 0.09 1.33 8.14 -51.93 -0.42 0.91 16 26 H 0.05 1.10 8.14 -51.93 -0.42 0.67 16 27 H 0.05 1.27 8.14 -51.93 -0.42 0.85 16 28 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 266.73 15.07 4.02 4.02 Total: -1.00 -35.37 266.73 -6.28 -41.64 By element: Atomic # 1 Polarization: -0.49 SS G_CDS: -4.19 Total: -4.68 kcal Atomic # 6 Polarization: -0.57 SS G_CDS: -1.17 Total: -1.74 kcal Atomic # 7 Polarization: -43.40 SS G_CDS: -0.01 Total: -43.41 kcal Atomic # 8 Polarization: -12.91 SS G_CDS: 0.09 Total: -12.82 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.98 kcal Total LS contribution 4.02 Total: 4.02 kcal Total: -35.37 -6.28 -41.64 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087666408.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.074 kcal (2) G-P(sol) polarization free energy of solvation -35.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.643 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds