Wall clock time and date at job start Mon Mar 30 2020 02:20:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52997 * 109.47482 * 2 1 4 4 N 1.46505 * 109.47212 * 179.97438 * 3 2 1 5 5 C 1.38691 * 125.98313 * 269.69100 * 4 3 2 6 6 C 1.32868 * 107.91091 * 179.82812 * 5 4 3 7 7 N 1.38697 * 107.91455 * 0.42956 * 6 5 4 8 8 C 1.46498 * 125.98176 * 179.76456 * 7 6 5 9 9 C 1.50702 * 109.47170 * 269.95886 * 8 7 6 10 10 H 1.08003 * 119.99764 * 0.02562 * 9 8 7 11 11 C 1.37872 * 120.00279 * 180.02562 * 9 8 7 12 12 N 1.31509 * 119.99907 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 120.00122 * 179.97438 * 11 9 8 14 14 H 1.48502 * 109.47244 * 60.00002 * 13 11 9 15 15 H 1.48500 * 109.47101 * 180.02562 * 13 11 9 16 16 H 1.48499 * 109.47122 * 300.00303 * 13 11 9 17 17 C 1.34755 * 108.03127 * 359.72824 * 7 6 5 18 18 O 1.21802 * 125.94308 * 180.02562 * 17 7 6 19 19 H 1.09001 * 109.47066 * 60.00169 * 1 2 3 20 20 H 1.08996 * 109.47747 * 179.97438 * 1 2 3 21 21 H 1.09002 * 109.47103 * 300.00247 * 1 2 3 22 22 H 1.09002 * 109.47103 * 239.99753 * 2 1 3 23 23 H 1.08998 * 109.46862 * 120.00565 * 2 1 3 24 24 H 1.09002 * 109.47153 * 59.99783 * 3 2 1 25 25 H 1.09001 * 109.46832 * 299.99974 * 3 2 1 26 26 H 1.07999 * 126.04488 * 359.97438 * 5 4 3 27 27 H 1.08001 * 126.03980 * 180.16133 * 6 5 4 28 28 H 1.09000 * 109.47104 * 29.95724 * 8 7 6 29 29 H 1.08999 * 109.47471 * 149.96079 * 8 7 6 30 30 H 0.97006 * 120.00298 * 180.02562 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5050 1.4424 0.0006 5 6 4.3195 1.4486 1.1232 6 6 5.5828 1.4424 0.7116 7 7 5.5796 1.4422 -0.6754 8 6 6.7630 1.4412 -1.5388 9 6 7.1692 2.8617 -1.8360 10 1 6.6027 3.6831 -1.4226 11 6 8.2640 3.1128 -2.6355 12 7 8.9536 2.1127 -3.1393 13 14 8.7671 4.8736 -3.0044 14 1 9.0823 5.5749 -1.7339 15 1 9.9661 4.8726 -3.8805 16 1 7.6523 5.5731 -3.6924 17 6 4.2972 1.4422 -1.0895 18 8 3.9199 1.4416 -2.2476 19 1 -0.3633 0.5138 -0.8900 20 1 -0.3634 -1.0276 -0.0005 21 1 -0.3633 0.5139 0.8900 22 1 1.8933 -0.5139 -0.8900 23 1 1.8932 -0.5139 0.8899 24 1 1.6767 1.9563 0.8900 25 1 1.6767 1.9563 -0.8900 26 1 3.9858 1.4547 2.1504 27 1 6.4575 1.4424 1.3451 28 1 7.5810 0.9276 -1.0336 29 1 6.5319 0.9268 -2.4716 30 1 9.7241 2.2893 -3.7015 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000087666415.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:16 Heat of formation + Delta-G solvation = 4.708703 kcal Electronic energy + Delta-G solvation = -13716.606527 eV Core-core repulsion = 11319.976170 eV Total energy + Delta-G solvation = -2396.630357 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.111 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.38601 -35.82617 -35.74502 -33.50955 -32.09475 -29.12511 -27.05439 -25.88295 -23.12360 -21.77154 -20.88254 -19.49810 -16.92936 -16.51283 -15.31195 -15.16632 -14.82719 -14.36752 -13.96194 -13.68068 -13.25534 -12.70568 -12.38478 -12.12244 -11.87888 -11.48860 -11.39054 -11.14217 -10.79576 -10.69919 -10.68909 -10.21902 -9.89645 -9.36336 -8.77376 -8.51618 -6.92014 -6.12461 -4.19174 2.90942 3.10137 3.30174 3.34000 3.38313 3.83426 4.33421 4.45933 4.90267 4.99969 5.20895 5.22466 5.35783 5.56606 5.66539 5.74987 5.92019 6.02293 6.07943 6.22185 6.27899 6.51550 7.15138 7.19026 7.38751 7.70239 7.88025 8.07095 8.36368 8.82363 9.25398 9.47721 10.95074 Molecular weight = 210.11amu Principal moments of inertia in cm(-1) A = 0.056803 B = 0.007141 C = 0.006995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 492.814271 B = 3920.323969 C = 4001.881579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.141 4.141 3 C 0.137 3.863 4 N -0.541 5.541 5 C -0.059 4.059 6 C 0.017 3.983 7 N -0.511 5.511 8 C 0.257 3.743 9 C -0.535 4.535 10 H 0.061 0.939 11 C 0.064 3.936 12 N -0.894 5.894 13 Si 0.904 3.096 14 H -0.275 1.275 15 H -0.285 1.285 16 H -0.275 1.275 17 C 0.641 3.359 18 O -0.582 6.582 19 H 0.057 0.943 20 H 0.056 0.944 21 H 0.054 0.946 22 H 0.068 0.932 23 H 0.065 0.935 24 H 0.080 0.920 25 H 0.084 0.916 26 H 0.168 0.832 27 H 0.171 0.829 28 H 0.046 0.954 29 H 0.048 0.952 30 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.812 -2.594 10.341 15.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.180 4.180 3 C 0.014 3.986 4 N -0.263 5.263 5 C -0.182 4.182 6 C -0.110 4.110 7 N -0.227 5.227 8 C 0.139 3.861 9 C -0.573 4.573 10 H 0.079 0.921 11 C -0.139 4.139 12 N -0.532 5.532 13 Si 0.731 3.269 14 H -0.201 1.201 15 H -0.210 1.210 16 H -0.201 1.201 17 C 0.344 3.656 18 O -0.461 6.461 19 H 0.076 0.924 20 H 0.075 0.925 21 H 0.073 0.927 22 H 0.087 0.913 23 H 0.084 0.916 24 H 0.098 0.902 25 H 0.102 0.898 26 H 0.185 0.815 27 H 0.189 0.811 28 H 0.063 0.937 29 H 0.066 0.934 30 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -10.878 -2.639 9.305 14.557 hybrid contribution 0.434 0.956 -0.084 1.053 sum -10.445 -1.684 9.221 14.034 Atomic orbital electron populations 1.21683 0.95081 1.01880 1.01889 1.21921 0.95978 0.97085 1.02999 1.21407 0.76718 0.97219 1.03260 1.45351 1.06164 1.68244 1.06523 1.21425 0.88956 1.15578 0.92278 1.21792 0.97575 1.06642 0.84950 1.46083 1.07615 1.62787 1.06216 1.19459 0.78918 0.98398 0.89291 1.21343 1.12625 0.91805 1.31534 0.92114 1.24925 0.95923 0.97906 0.95138 1.69917 1.18992 1.30970 1.33313 0.86452 0.77951 0.84086 0.78361 1.20059 1.21015 1.20060 1.16350 0.81533 0.83119 0.84618 1.90958 1.77596 1.61243 1.16266 0.92431 0.92482 0.92664 0.91291 0.91621 0.90158 0.89782 0.81454 0.81132 0.93656 0.93398 0.92394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.37 9.91 37.15 0.37 -1.01 16 2 C -0.14 -1.72 6.26 -26.74 -0.17 -1.89 16 3 C 0.14 1.90 6.04 -4.04 -0.02 1.87 16 4 N -0.54 -9.80 2.78 -121.40 -0.34 -10.14 16 5 C -0.06 -0.91 11.49 -16.30 -0.19 -1.10 16 6 C 0.02 0.31 11.49 -16.29 -0.19 0.13 16 7 N -0.51 -11.98 2.76 -122.70 -0.34 -12.32 16 8 C 0.26 6.92 5.79 -5.19 -0.03 6.89 16 9 C -0.53 -15.45 9.39 -34.44 -0.32 -15.77 16 10 H 0.06 1.78 7.81 -52.48 -0.41 1.37 16 11 C 0.06 1.83 5.46 -17.82 -0.10 1.73 16 12 N -0.89 -26.36 13.29 55.43 0.74 -25.63 16 13 Si 0.90 21.90 29.54 -169.99 -5.02 16.88 16 14 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 15 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 16 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 17 C 0.64 15.27 8.52 -86.95 -0.74 14.52 16 18 O -0.58 -16.11 17.64 5.10 0.09 -16.02 16 19 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 20 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 21 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 22 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 23 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 24 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 25 H 0.08 1.26 8.07 -51.93 -0.42 0.85 16 26 H 0.17 1.79 8.06 -52.49 -0.42 1.37 16 27 H 0.17 2.53 8.06 -52.49 -0.42 2.10 16 28 H 0.05 1.19 8.14 -51.93 -0.42 0.77 16 29 H 0.05 1.42 8.07 -51.93 -0.42 1.00 16 30 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 LS Contribution 267.05 15.07 4.02 4.02 Total: -1.00 -34.03 267.05 -6.42 -40.45 By element: Atomic # 1 Polarization: 1.54 SS G_CDS: -4.19 Total: -2.64 kcal Atomic # 6 Polarization: 6.77 SS G_CDS: -1.39 Total: 5.38 kcal Atomic # 7 Polarization: -48.14 SS G_CDS: 0.06 Total: -48.08 kcal Atomic # 8 Polarization: -16.11 SS G_CDS: 0.09 Total: -16.02 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 4.02 Total: 4.02 kcal Total: -34.03 -6.42 -40.45 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087666415.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.159 kcal (2) G-P(sol) polarization free energy of solvation -34.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.450 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds