Wall clock time and date at job start Mon Mar 30 2020 02:20:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52997 * 109.47482 * 2 1 4 4 N 1.46505 * 109.47212 * 179.97438 * 3 2 1 5 5 C 1.38691 * 125.98313 * 269.69100 * 4 3 2 6 6 C 1.32868 * 107.91091 * 179.82812 * 5 4 3 7 7 N 1.38697 * 107.91455 * 0.42956 * 6 5 4 8 8 C 1.46498 * 125.98176 * 179.76456 * 7 6 5 9 9 C 1.50702 * 109.47170 * 269.95886 * 8 7 6 10 10 H 1.08003 * 119.99764 * 0.02562 * 9 8 7 11 11 C 1.37872 * 120.00279 * 180.02562 * 9 8 7 12 12 N 1.31509 * 119.99907 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 120.00122 * 179.97438 * 11 9 8 14 14 H 1.48502 * 109.47244 * 60.00002 * 13 11 9 15 15 H 1.48500 * 109.47101 * 180.02562 * 13 11 9 16 16 H 1.48499 * 109.47122 * 300.00303 * 13 11 9 17 17 C 1.34755 * 108.03127 * 359.72824 * 7 6 5 18 18 O 1.21802 * 125.94308 * 180.02562 * 17 7 6 19 19 H 1.09001 * 109.47066 * 60.00169 * 1 2 3 20 20 H 1.08996 * 109.47747 * 179.97438 * 1 2 3 21 21 H 1.09002 * 109.47103 * 300.00247 * 1 2 3 22 22 H 1.09002 * 109.47103 * 239.99753 * 2 1 3 23 23 H 1.08998 * 109.46862 * 120.00565 * 2 1 3 24 24 H 1.09002 * 109.47153 * 59.99783 * 3 2 1 25 25 H 1.09001 * 109.46832 * 299.99974 * 3 2 1 26 26 H 1.07999 * 126.04488 * 359.97438 * 5 4 3 27 27 H 1.08001 * 126.03980 * 180.16133 * 6 5 4 28 28 H 1.09000 * 109.47104 * 29.95724 * 8 7 6 29 29 H 1.08999 * 109.47471 * 149.96079 * 8 7 6 30 30 H 0.97006 * 120.00298 * 180.02562 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5050 1.4424 0.0006 5 6 4.3195 1.4486 1.1232 6 6 5.5828 1.4424 0.7116 7 7 5.5796 1.4422 -0.6754 8 6 6.7630 1.4412 -1.5388 9 6 7.1692 2.8617 -1.8360 10 1 6.6027 3.6831 -1.4226 11 6 8.2640 3.1128 -2.6355 12 7 8.9536 2.1127 -3.1393 13 14 8.7671 4.8736 -3.0044 14 1 9.0823 5.5749 -1.7339 15 1 9.9661 4.8726 -3.8805 16 1 7.6523 5.5731 -3.6924 17 6 4.2972 1.4422 -1.0895 18 8 3.9199 1.4416 -2.2476 19 1 -0.3633 0.5138 -0.8900 20 1 -0.3634 -1.0276 -0.0005 21 1 -0.3633 0.5139 0.8900 22 1 1.8933 -0.5139 -0.8900 23 1 1.8932 -0.5139 0.8899 24 1 1.6767 1.9563 0.8900 25 1 1.6767 1.9563 -0.8900 26 1 3.9858 1.4547 2.1504 27 1 6.4575 1.4424 1.3451 28 1 7.5810 0.9276 -1.0336 29 1 6.5319 0.9268 -2.4716 30 1 9.7241 2.2893 -3.7015 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000087666415.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:15 Heat of formation + Delta-G solvation = -17.253866 kcal Electronic energy + Delta-G solvation = -13717.558895 eV Core-core repulsion = 11319.976170 eV Total energy + Delta-G solvation = -2397.582725 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.111 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -42.98844 -37.67415 -37.14760 -35.32037 -33.74658 -30.69991 -28.87275 -27.23056 -25.05230 -22.92483 -22.33789 -21.14197 -18.87499 -18.29823 -16.95825 -16.79846 -16.24400 -16.15422 -15.41534 -15.10149 -14.67957 -14.19566 -14.11452 -13.55024 -13.17875 -13.05711 -12.90255 -12.66119 -12.60846 -12.33771 -12.24476 -11.73834 -11.69271 -11.23099 -10.71620 -10.50248 -8.56179 -8.26899 -6.48205 1.35601 1.40497 1.46909 1.55773 1.60228 2.02881 2.35633 2.90054 2.99087 3.85057 4.01597 4.26607 4.34133 4.50734 4.61001 4.67613 4.68999 4.87231 4.90250 4.97377 5.13564 5.18511 5.37264 5.47238 5.55724 5.71625 5.87915 6.19078 6.58816 6.78026 7.20245 7.51083 8.76219 Molecular weight = 210.11amu Principal moments of inertia in cm(-1) A = 0.056803 B = 0.007141 C = 0.006995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 492.814271 B = 3920.323969 C = 4001.881579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.135 4.135 3 C 0.127 3.873 4 N -0.531 5.531 5 C -0.015 4.015 6 C -0.024 4.024 7 N -0.527 5.527 8 C 0.273 3.727 9 C -0.556 4.556 10 H 0.052 0.948 11 C 0.014 3.986 12 N -0.924 5.924 13 Si 0.975 3.025 14 H -0.258 1.258 15 H -0.272 1.272 16 H -0.279 1.279 17 C 0.612 3.388 18 O -0.642 6.642 19 H 0.050 0.950 20 H 0.065 0.935 21 H 0.080 0.920 22 H 0.030 0.970 23 H 0.081 0.919 24 H 0.129 0.871 25 H 0.064 0.936 26 H 0.233 0.767 27 H 0.199 0.801 28 H 0.046 0.954 29 H 0.002 0.998 30 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.737 -1.566 13.146 17.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.173 4.173 3 C 0.006 3.994 4 N -0.251 5.251 5 C -0.137 4.137 6 C -0.147 4.147 7 N -0.243 5.243 8 C 0.153 3.847 9 C -0.594 4.594 10 H 0.070 0.930 11 C -0.186 4.186 12 N -0.562 5.562 13 Si 0.798 3.202 14 H -0.182 1.182 15 H -0.197 1.197 16 H -0.205 1.205 17 C 0.314 3.686 18 O -0.526 6.526 19 H 0.069 0.931 20 H 0.084 0.916 21 H 0.099 0.901 22 H 0.049 0.951 23 H 0.100 0.900 24 H 0.147 0.853 25 H 0.082 0.918 26 H 0.249 0.751 27 H 0.216 0.784 28 H 0.064 0.936 29 H 0.020 0.980 30 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -11.834 -1.625 12.200 17.074 hybrid contribution 0.640 0.576 -0.888 1.237 sum -11.194 -1.050 11.311 15.948 Atomic orbital electron populations 1.21654 0.92568 1.02855 1.02838 1.21863 0.98059 0.95505 1.01891 1.21857 0.74069 0.98793 1.04673 1.45572 1.07717 1.66105 1.05687 1.22417 0.87284 1.10380 0.93638 1.22452 1.00247 1.09520 0.82509 1.45905 1.06612 1.63384 1.08357 1.18942 0.80270 0.97205 0.88328 1.21546 1.13161 0.92266 1.32461 0.93015 1.25862 0.95634 1.02609 0.94475 1.70023 1.19361 1.33276 1.33548 0.85362 0.77578 0.78361 0.78884 1.18202 1.19705 1.20495 1.16738 0.82309 0.84321 0.85220 1.90877 1.78660 1.64077 1.18978 0.93099 0.91559 0.90085 0.95110 0.90001 0.85267 0.91760 0.75080 0.78388 0.93635 0.97962 0.91892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.25 9.91 71.98 0.71 -1.54 16 2 C -0.13 -3.03 6.26 30.59 0.19 -2.84 16 3 C 0.13 3.23 6.04 86.38 0.52 3.75 16 4 N -0.53 -18.41 2.78 -656.19 -1.82 -20.23 16 5 C -0.02 -0.41 11.49 82.43 0.95 0.54 16 6 C -0.02 -0.82 11.49 82.43 0.95 0.13 16 7 N -0.53 -25.32 2.76 -660.29 -1.82 -27.14 16 8 C 0.27 15.42 5.79 85.63 0.50 15.91 16 9 C -0.56 -33.11 9.39 25.60 0.24 -32.87 16 10 H 0.05 3.09 7.81 -2.91 -0.02 3.07 16 11 C 0.01 0.83 5.46 84.65 0.46 1.29 16 12 N -0.92 -55.63 13.29 21.44 0.28 -55.35 16 13 Si 0.97 45.07 29.54 68.60 2.03 47.09 16 14 H -0.26 -11.14 7.11 99.48 0.71 -10.43 16 15 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 16 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 17 C 0.61 30.04 8.52 179.07 1.53 31.57 16 18 O -0.64 -37.82 17.64 -4.67 -0.08 -37.90 16 19 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 20 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 21 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 22 H 0.03 0.92 8.14 -2.39 -0.02 0.90 16 23 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 24 H 0.13 2.09 8.14 -2.39 -0.02 2.07 16 25 H 0.06 1.91 8.07 -2.39 -0.02 1.90 16 26 H 0.23 3.22 8.06 -2.91 -0.02 3.19 16 27 H 0.20 5.42 8.06 -2.91 -0.02 5.40 16 28 H 0.05 2.51 8.14 -2.39 -0.02 2.49 16 29 H 0.00 0.14 8.07 -2.39 -0.02 0.13 16 30 H 0.27 15.26 8.31 -92.70 -0.77 14.49 16 Total: -1.00 -79.46 267.05 5.74 -73.73 By element: Atomic # 1 Polarization: 2.75 SS G_CDS: 1.11 Total: 3.85 kcal Atomic # 6 Polarization: 9.90 SS G_CDS: 6.05 Total: 15.95 kcal Atomic # 7 Polarization: -99.36 SS G_CDS: -3.36 Total: -102.72 kcal Atomic # 8 Polarization: -37.82 SS G_CDS: -0.08 Total: -37.90 kcal Atomic # 14 Polarization: 45.07 SS G_CDS: 2.03 Total: 47.09 kcal Total: -79.46 5.74 -73.73 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087666415.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.473 kcal (2) G-P(sol) polarization free energy of solvation -79.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.727 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds