Wall clock time and date at job start Mon Mar 30 2020 02:20:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 N 1.46500 * 109.47473 * 239.99627 * 2 1 3 5 5 C 1.38699 * 125.98055 * 60.02220 * 4 2 1 6 6 C 1.32865 * 107.91111 * 179.97438 * 5 4 2 7 7 N 1.38691 * 107.91975 * 0.02562 * 6 5 4 8 8 C 1.46497 * 125.98778 * 180.02562 * 7 6 5 9 9 C 1.50697 * 109.47439 * 89.97051 * 8 7 6 10 10 H 1.08001 * 119.99760 * 0.02562 * 9 8 7 11 11 C 1.37878 * 120.00188 * 179.97438 * 9 8 7 12 12 N 1.31519 * 119.99414 * 0.02562 * 11 9 8 13 13 Si 1.86794 * 120.00320 * 180.02562 * 11 9 8 14 14 H 1.48507 * 109.47124 * 60.00023 * 13 11 9 15 15 H 1.48493 * 109.47222 * 180.02562 * 13 11 9 16 16 H 1.48500 * 109.46920 * 300.00502 * 13 11 9 17 17 C 1.34751 * 125.98628 * 239.71719 * 4 2 1 18 18 O 1.21798 * 125.94483 * 359.97438 * 17 4 2 19 19 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 20 20 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 21 21 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 22 22 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 23 23 H 1.08993 * 109.46955 * 60.00011 * 3 2 1 24 24 H 1.09000 * 109.47050 * 179.97438 * 3 2 1 25 25 H 1.09001 * 109.47002 * 299.99574 * 3 2 1 26 26 H 1.07999 * 126.04324 * 0.02562 * 5 4 2 27 27 H 1.08007 * 126.03755 * 180.02562 * 6 5 4 28 28 H 1.09002 * 109.47070 * 209.97902 * 8 7 6 29 29 H 1.09005 * 109.46810 * 329.97023 * 8 7 6 30 30 H 0.97000 * 119.99345 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0184 -0.6907 -1.1961 5 6 1.7613 -0.3264 -2.5095 6 6 2.3770 -1.1964 -3.3028 7 7 3.0290 -2.1196 -2.4990 8 6 3.8312 -3.2529 -2.9661 9 6 5.2661 -2.8210 -3.1254 10 1 5.5520 -1.8040 -2.9008 11 6 6.2142 -3.7243 -3.5570 12 7 5.8660 -4.9628 -3.8301 13 14 7.9930 -3.1891 -3.7538 14 1 8.5157 -2.7177 -2.4461 15 1 8.8060 -4.3379 -4.2274 16 1 8.0711 -2.0859 -4.7448 17 6 2.8007 -1.7877 -1.2130 18 8 3.2256 -2.3779 -0.2359 19 1 -0.3633 -1.0277 0.0005 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3634 0.5139 0.8900 22 1 1.8934 -0.5137 0.8900 23 1 1.6767 1.9563 0.8899 24 1 3.1300 1.4425 0.0005 25 1 1.6767 1.9564 -0.8900 26 1 1.1666 0.5160 -2.8305 27 1 2.3709 -1.1863 -4.3828 28 1 3.7741 -4.0628 -2.2388 29 1 3.4472 -3.5988 -3.9258 30 1 6.5329 -5.5982 -4.1340 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000087666420.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:17 Heat of formation + Delta-G solvation = -14.322444 kcal Electronic energy + Delta-G solvation = -13916.574730 eV Core-core repulsion = 11519.119121 eV Total energy + Delta-G solvation = -2397.455609 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.111 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -43.02355 -37.71872 -37.43346 -35.29223 -33.18505 -29.95433 -28.85489 -28.09321 -25.41807 -23.65537 -21.89468 -20.84617 -18.85240 -18.24454 -16.93619 -16.91060 -16.19545 -15.89891 -15.22931 -15.01995 -14.64936 -14.13748 -14.00039 -13.54090 -13.12931 -13.09902 -13.05861 -12.67668 -12.61788 -12.34672 -12.25356 -11.92270 -11.75305 -11.24507 -10.72040 -10.50663 -8.55952 -8.27207 -6.48640 1.34789 1.39607 1.46087 1.54957 1.59446 2.03905 2.34976 2.89173 2.98417 3.75881 4.11653 4.21267 4.34500 4.48213 4.67517 4.74201 4.76962 4.89774 4.90396 4.94993 5.03717 5.21288 5.33023 5.46349 5.56760 5.74360 5.87712 6.20133 6.58519 6.78875 7.19752 7.51628 8.75696 Molecular weight = 210.11amu Principal moments of inertia in cm(-1) A = 0.050893 B = 0.007914 C = 0.007713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 550.042442 B = 3537.102581 C = 3629.385842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.137 3.863 3 C -0.150 4.150 4 N -0.524 5.524 5 C -0.013 4.013 6 C -0.023 4.023 7 N -0.525 5.525 8 C 0.273 3.727 9 C -0.557 4.557 10 H 0.051 0.949 11 C 0.014 3.986 12 N -0.923 5.923 13 Si 0.974 3.026 14 H -0.279 1.279 15 H -0.272 1.272 16 H -0.258 1.258 17 C 0.611 3.389 18 O -0.644 6.644 19 H 0.040 0.960 20 H 0.084 0.916 21 H 0.098 0.902 22 H 0.069 0.931 23 H 0.099 0.901 24 H 0.035 0.965 25 H 0.084 0.916 26 H 0.228 0.772 27 H 0.199 0.801 28 H 0.002 0.998 29 H 0.046 0.954 30 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.854 14.130 1.271 17.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.036 3.964 3 C -0.208 4.208 4 N -0.244 5.244 5 C -0.136 4.136 6 C -0.147 4.147 7 N -0.241 5.241 8 C 0.153 3.847 9 C -0.595 4.595 10 H 0.069 0.931 11 C -0.186 4.186 12 N -0.562 5.562 13 Si 0.797 3.203 14 H -0.205 1.205 15 H -0.196 1.196 16 H -0.182 1.182 17 C 0.313 3.687 18 O -0.529 6.529 19 H 0.059 0.941 20 H 0.103 0.897 21 H 0.116 0.884 22 H 0.087 0.913 23 H 0.117 0.883 24 H 0.055 0.945 25 H 0.103 0.897 26 H 0.244 0.756 27 H 0.216 0.784 28 H 0.021 0.979 29 H 0.064 0.936 30 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -10.498 13.512 1.901 17.216 hybrid contribution 1.171 -0.556 0.013 1.297 sum -9.327 12.956 1.914 16.078 Atomic orbital electron populations 1.22091 0.91227 1.02266 1.04957 1.21406 0.96584 0.93850 0.84589 1.22109 1.00524 0.93178 1.04969 1.45708 1.45235 1.25087 1.08383 1.22237 1.07263 1.03759 0.80309 1.22421 1.00521 0.92464 0.99268 1.45904 1.44804 1.27362 1.06051 1.18937 0.89445 0.82053 0.94273 1.21555 0.93840 0.97443 1.46623 0.93057 1.25866 1.04074 0.94556 0.94114 1.70027 1.36545 1.04509 1.45121 0.85373 0.77790 0.78457 0.78644 1.20505 1.19634 1.18208 1.16751 0.83932 0.83980 0.84002 1.90870 1.62537 1.61318 1.38159 0.94061 0.89666 0.88355 0.91309 0.88263 0.94540 0.89684 0.75557 0.78412 0.97948 0.93604 0.91877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.69 9.25 71.98 0.67 -2.02 16 2 C 0.14 3.62 3.56 44.99 0.16 3.78 16 3 C -0.15 -2.91 9.25 71.98 0.67 -2.25 16 4 N -0.52 -18.37 2.63 -633.59 -1.66 -20.04 16 5 C -0.01 -0.37 10.50 82.43 0.87 0.50 16 6 C -0.02 -0.80 11.49 82.43 0.95 0.14 16 7 N -0.53 -25.37 2.76 -660.29 -1.82 -27.20 16 8 C 0.27 15.48 5.79 85.63 0.50 15.98 16 9 C -0.56 -33.27 9.39 25.60 0.24 -33.03 16 10 H 0.05 3.09 7.81 -2.91 -0.02 3.06 16 11 C 0.01 0.82 5.46 84.65 0.46 1.28 16 12 N -0.92 -55.77 13.29 21.45 0.28 -55.48 16 13 Si 0.97 45.24 29.54 68.60 2.03 47.27 16 14 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 15 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 16 H -0.26 -11.20 7.11 99.48 0.71 -10.49 16 17 C 0.61 30.24 8.52 179.07 1.53 31.77 16 18 O -0.64 -38.26 17.41 -4.66 -0.08 -38.34 16 19 H 0.04 0.92 8.14 -2.39 -0.02 0.90 16 20 H 0.08 1.17 7.94 -2.39 -0.02 1.16 16 21 H 0.10 1.25 8.14 -2.38 -0.02 1.23 16 22 H 0.07 2.21 7.73 -2.39 -0.02 2.19 16 23 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 24 H 0.04 0.89 8.14 -2.39 -0.02 0.87 16 25 H 0.08 1.27 7.94 -2.39 -0.02 1.25 16 26 H 0.23 3.38 8.06 -2.91 -0.02 3.36 16 27 H 0.20 5.47 8.06 -2.91 -0.02 5.45 16 28 H 0.00 0.15 8.08 -2.39 -0.02 0.14 16 29 H 0.05 2.53 8.14 -2.38 -0.02 2.51 16 30 H 0.27 15.29 8.31 -92.71 -0.77 14.52 16 Total: -1.00 -79.71 264.78 5.88 -73.83 By element: Atomic # 1 Polarization: 2.71 SS G_CDS: 1.11 Total: 3.82 kcal Atomic # 6 Polarization: 10.12 SS G_CDS: 6.03 Total: 16.15 kcal Atomic # 7 Polarization: -99.52 SS G_CDS: -3.20 Total: -102.72 kcal Atomic # 8 Polarization: -38.26 SS G_CDS: -0.08 Total: -38.34 kcal Atomic # 14 Polarization: 45.24 SS G_CDS: 2.03 Total: 47.27 kcal Total: -79.71 5.88 -73.83 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087666420.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.505 kcal (2) G-P(sol) polarization free energy of solvation -79.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.827 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds