Wall clock time and date at job start Mon Mar 30 2020 02:49:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09003 * 109.46813 * 2 1 4 4 C 1.50702 * 109.47093 * 120.00004 * 2 1 3 5 5 H 1.08003 * 119.99769 * 120.00271 * 4 2 1 6 6 C 1.37868 * 119.99983 * 300.00181 * 4 2 1 7 7 N 1.31519 * 120.00448 * 359.97438 * 6 4 2 8 8 Si 1.86807 * 120.00188 * 180.02562 * 6 4 2 9 9 H 1.48504 * 109.46640 * 59.99634 * 8 6 4 10 10 H 1.48494 * 109.47497 * 180.02562 * 8 6 4 11 11 H 1.48507 * 109.46704 * 300.00313 * 8 6 4 12 12 N 1.46905 * 109.47102 * 240.00077 * 2 1 3 13 13 C 1.46901 * 110.99870 * 85.00132 * 12 2 1 14 14 C 1.53004 * 109.46916 * 180.02562 * 13 12 2 15 15 N 1.46502 * 109.46871 * 179.97438 * 14 13 12 16 16 C 1.35314 * 125.86780 * 124.71346 * 15 14 13 17 17 C 1.35354 * 106.17388 * 179.90547 * 16 15 14 18 18 N 1.33768 * 106.49419 * 0.35022 * 17 16 15 19 19 N 1.28633 * 108.89088 * 359.77716 * 18 17 16 20 20 H 1.08996 * 109.46950 * 59.99838 * 1 2 3 21 21 H 1.09003 * 109.46813 * 180.02562 * 1 2 3 22 22 H 1.08999 * 109.47105 * 300.00114 * 1 2 3 23 23 H 0.96997 * 120.00331 * 179.97438 * 7 6 4 24 24 H 1.00901 * 110.99869 * 321.04843 * 12 2 1 25 25 H 1.09004 * 109.47031 * 299.99620 * 13 12 2 26 26 H 1.08995 * 109.47111 * 59.99900 * 13 12 2 27 27 H 1.08995 * 109.46615 * 299.99641 * 14 13 12 28 28 H 1.08996 * 109.46939 * 60.00272 * 14 13 12 29 29 H 1.07999 * 126.90931 * 0.02562 * 16 15 14 30 30 H 1.07994 * 126.74720 * 180.12588 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2305 5 1 2.6533 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9435 0.8302 2.6034 8 14 2.3225 -1.1196 4.0080 9 1 3.8075 -1.1189 4.0076 10 1 1.8269 -0.4200 5.2204 11 1 1.8281 -2.5199 4.0081 12 7 2.0197 -0.6925 -1.1995 13 6 2.0825 0.2226 -2.3469 14 6 2.5951 -0.5332 -3.5745 15 7 2.6571 0.3794 -4.7190 16 6 3.7499 0.6262 -5.4778 17 6 3.3628 1.5211 -6.4166 18 7 2.0712 1.7804 -6.1843 19 7 1.6829 1.0882 -5.1720 20 1 -0.3633 0.5138 -0.8899 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5138 0.8900 23 1 0.7089 1.1613 3.4844 24 1 1.4495 -1.4979 -1.4101 25 1 1.0871 0.6163 -2.5526 26 1 2.7589 1.0462 -2.1182 27 1 3.5904 -0.9271 -3.3691 28 1 1.9183 -1.3564 -3.8030 29 1 4.7328 0.1944 -5.3594 30 1 3.9769 1.9453 -7.1971 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000159618250.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:12 Heat of formation + Delta-G solvation = 97.999381 kcal Electronic energy + Delta-G solvation = -13389.894674 eV Core-core repulsion = 11029.602455 eV Total energy + Delta-G solvation = -2360.292218 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.118 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -43.14987 -36.73366 -34.60625 -32.49150 -30.97796 -29.85381 -26.94358 -25.20194 -23.24632 -22.52168 -21.06813 -20.34170 -17.45832 -16.55958 -16.07361 -15.20971 -14.84160 -14.73376 -14.01396 -13.79978 -13.28324 -12.49721 -12.12515 -11.70918 -11.58464 -11.40825 -10.96786 -10.91920 -10.77645 -10.58438 -10.21454 -10.12010 -9.86411 -9.35350 -9.10648 -8.42076 -7.47854 -6.04245 -4.08863 1.67365 2.42712 2.63257 3.30632 3.35257 3.37701 4.37774 4.46493 4.61943 4.92329 5.05725 5.23654 5.27239 5.29697 5.34272 5.73326 5.98704 6.12462 6.23407 6.61664 6.64868 6.77176 6.99760 7.21652 7.65794 7.77198 8.15359 8.34689 8.46910 8.58094 8.97133 9.56678 11.02786 Molecular weight = 210.12amu Principal moments of inertia in cm(-1) A = 0.071479 B = 0.005641 C = 0.005455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 391.627558 B = 4962.339497 C = 5131.812077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.214 3.786 3 H 0.034 0.966 4 C -0.500 4.500 5 H 0.063 0.937 6 C 0.056 3.944 7 N -0.896 5.896 8 Si 0.900 3.100 9 H -0.277 1.277 10 H -0.288 1.288 11 H -0.277 1.277 12 N -0.680 5.680 13 C 0.049 3.951 14 C 0.114 3.886 15 N -0.282 5.282 16 C -0.051 4.051 17 C -0.060 4.060 18 N -0.281 5.281 19 N -0.082 5.082 20 H 0.007 0.993 21 H 0.029 0.971 22 H 0.090 0.910 23 H 0.261 0.739 24 H 0.328 0.672 25 H 0.040 0.960 26 H 0.072 0.928 27 H 0.114 0.886 28 H 0.096 0.904 29 H 0.189 0.811 30 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.314 -2.562 -12.217 13.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.106 3.894 3 H 0.052 0.948 4 C -0.538 4.538 5 H 0.081 0.919 6 C -0.145 4.145 7 N -0.535 5.535 8 Si 0.728 3.272 9 H -0.203 1.203 10 H -0.214 1.214 11 H -0.203 1.203 12 N -0.311 5.311 13 C -0.082 4.082 14 C -0.007 4.007 15 N -0.076 5.076 16 C -0.202 4.202 17 C -0.217 4.217 18 N -0.146 5.146 19 N -0.062 5.062 20 H 0.026 0.974 21 H 0.048 0.952 22 H 0.109 0.891 23 H 0.071 0.929 24 H 0.144 0.856 25 H 0.058 0.942 26 H 0.090 0.910 27 H 0.132 0.868 28 H 0.114 0.886 29 H 0.206 0.794 30 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges 4.406 -1.993 -11.702 12.662 hybrid contribution 0.575 -0.674 0.615 1.078 sum 4.981 -2.668 -11.087 12.444 Atomic orbital electron populations 1.22438 1.00365 0.99383 1.00802 1.19190 0.89875 0.94438 0.85871 0.94767 1.21067 1.30673 1.12625 0.89466 0.91888 1.24959 0.95241 0.95169 0.99115 1.69873 1.36998 1.23043 1.23636 0.86531 0.79148 0.79578 0.81933 1.20267 1.21404 1.20315 1.60852 1.58376 1.08950 1.02901 1.22095 1.00260 0.96264 0.89605 1.22287 1.05524 0.90542 0.82356 1.47618 1.07433 1.29689 1.22837 1.23725 0.95178 1.04768 0.96540 1.23591 0.93783 1.01580 1.02762 1.75108 1.11691 1.18519 1.09302 1.78332 1.14326 1.05332 1.08243 0.97391 0.95165 0.89096 0.92872 0.85572 0.94179 0.90952 0.86817 0.88557 0.79365 0.79605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.04 8.94 37.16 0.33 -3.71 16 2 C 0.21 5.21 2.57 -68.86 -0.18 5.03 16 3 H 0.03 0.93 7.80 -51.93 -0.40 0.53 16 4 C -0.50 -13.42 8.84 -34.44 -0.30 -13.73 16 5 H 0.06 1.68 7.81 -52.48 -0.41 1.27 16 6 C 0.06 1.53 5.30 -17.82 -0.09 1.43 16 7 N -0.90 -25.37 11.32 55.43 0.63 -24.75 16 8 Si 0.90 21.05 29.54 -169.99 -5.02 16.03 16 9 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 10 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 11 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 12 N -0.68 -13.28 6.23 -107.94 -0.67 -13.95 16 13 C 0.05 0.82 5.61 -3.82 -0.02 0.79 16 14 C 0.11 1.43 6.72 -4.04 -0.03 1.40 16 15 N -0.28 -3.85 3.44 -61.26 -0.21 -4.06 16 16 C -0.05 -0.55 11.57 -17.04 -0.20 -0.75 16 17 C -0.06 -0.71 12.05 -17.74 -0.21 -0.92 16 18 N -0.28 -4.50 12.41 30.23 0.38 -4.12 16 19 N -0.08 -1.37 12.91 60.35 0.78 -0.59 16 20 H 0.01 0.16 7.45 -51.93 -0.39 -0.23 16 21 H 0.03 0.67 8.13 -51.93 -0.42 0.25 16 22 H 0.09 2.41 6.07 -51.93 -0.32 2.09 16 23 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 24 H 0.33 5.90 8.47 -39.29 -0.33 5.57 16 25 H 0.04 0.73 7.41 -51.93 -0.38 0.35 16 26 H 0.07 1.31 8.05 -51.93 -0.42 0.89 16 27 H 0.11 1.17 8.07 -51.93 -0.42 0.76 16 28 H 0.10 1.08 8.14 -51.93 -0.42 0.66 16 29 H 0.19 1.26 8.06 -52.49 -0.42 0.83 16 30 H 0.19 1.48 8.06 -52.49 -0.42 1.06 16 LS Contribution 260.62 15.07 3.93 3.93 Total: -1.00 -30.73 260.62 -4.80 -35.52 By element: Atomic # 1 Polarization: 6.34 SS G_CDS: -3.90 Total: 2.44 kcal Atomic # 6 Polarization: -9.75 SS G_CDS: -0.70 Total: -10.45 kcal Atomic # 7 Polarization: -48.37 SS G_CDS: 0.90 Total: -47.47 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 3.93 Total: 3.93 kcal Total: -30.73 -4.80 -35.52 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000159618250.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.523 kcal (2) G-P(sol) polarization free energy of solvation -30.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.523 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds