Wall clock time and date at job start Mon Mar 30 2020 02:49:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09003 * 109.46813 * 2 1 4 4 C 1.50702 * 109.47093 * 120.00004 * 2 1 3 5 5 H 1.08003 * 119.99769 * 120.00271 * 4 2 1 6 6 C 1.37868 * 119.99983 * 300.00181 * 4 2 1 7 7 N 1.31519 * 120.00448 * 359.97438 * 6 4 2 8 8 Si 1.86807 * 120.00188 * 180.02562 * 6 4 2 9 9 H 1.48504 * 109.46640 * 59.99634 * 8 6 4 10 10 H 1.48494 * 109.47497 * 180.02562 * 8 6 4 11 11 H 1.48507 * 109.46704 * 300.00313 * 8 6 4 12 12 N 1.46905 * 109.47102 * 240.00077 * 2 1 3 13 13 C 1.46901 * 110.99870 * 85.00132 * 12 2 1 14 14 C 1.53004 * 109.46916 * 180.02562 * 13 12 2 15 15 N 1.46502 * 109.46871 * 179.97438 * 14 13 12 16 16 C 1.35314 * 125.86780 * 124.71346 * 15 14 13 17 17 C 1.35354 * 106.17388 * 179.90547 * 16 15 14 18 18 N 1.33768 * 106.49419 * 0.35022 * 17 16 15 19 19 N 1.28633 * 108.89088 * 359.77716 * 18 17 16 20 20 H 1.08996 * 109.46950 * 59.99838 * 1 2 3 21 21 H 1.09003 * 109.46813 * 180.02562 * 1 2 3 22 22 H 1.08999 * 109.47105 * 300.00114 * 1 2 3 23 23 H 0.96997 * 120.00331 * 179.97438 * 7 6 4 24 24 H 1.00901 * 110.99869 * 321.04843 * 12 2 1 25 25 H 1.09004 * 109.47031 * 299.99620 * 13 12 2 26 26 H 1.08995 * 109.47111 * 59.99900 * 13 12 2 27 27 H 1.08995 * 109.46615 * 299.99641 * 14 13 12 28 28 H 1.08996 * 109.46939 * 60.00272 * 14 13 12 29 29 H 1.07999 * 126.90931 * 0.02562 * 16 15 14 30 30 H 1.07994 * 126.74720 * 180.12588 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2305 5 1 2.6533 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9435 0.8302 2.6034 8 14 2.3225 -1.1196 4.0080 9 1 3.8075 -1.1189 4.0076 10 1 1.8269 -0.4200 5.2204 11 1 1.8281 -2.5199 4.0081 12 7 2.0197 -0.6925 -1.1995 13 6 2.0825 0.2226 -2.3469 14 6 2.5951 -0.5332 -3.5745 15 7 2.6571 0.3794 -4.7190 16 6 3.7499 0.6262 -5.4778 17 6 3.3628 1.5211 -6.4166 18 7 2.0712 1.7804 -6.1843 19 7 1.6829 1.0882 -5.1720 20 1 -0.3633 0.5138 -0.8899 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5138 0.8900 23 1 0.7089 1.1613 3.4844 24 1 1.4495 -1.4979 -1.4101 25 1 1.0871 0.6163 -2.5526 26 1 2.7589 1.0462 -2.1182 27 1 3.5904 -0.9271 -3.3691 28 1 1.9183 -1.3564 -3.8030 29 1 4.7328 0.1944 -5.3594 30 1 3.9769 1.9453 -7.1971 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000159618250.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:12 Heat of formation + Delta-G solvation = 75.222586 kcal Electronic energy + Delta-G solvation = -13390.882350 eV Core-core repulsion = 11029.602455 eV Total energy + Delta-G solvation = -2361.279894 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.118 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -44.14602 -38.29838 -35.98449 -34.27859 -31.94023 -31.43887 -28.41741 -27.25199 -24.56069 -23.49314 -22.26275 -22.13448 -18.61623 -18.25177 -17.29451 -16.72591 -16.50135 -15.76291 -15.33172 -15.22750 -14.76084 -14.20119 -13.58928 -13.44686 -13.00109 -12.81305 -12.71080 -12.50634 -12.35294 -12.17168 -11.93360 -11.84027 -11.18762 -10.97101 -10.49534 -10.30477 -9.14989 -8.10625 -6.22908 0.70911 1.44863 1.47175 1.47795 1.55283 1.67004 2.44537 3.18526 3.41995 3.63039 3.82246 3.96288 4.25582 4.29801 4.36170 4.56896 4.65974 4.77151 4.84550 4.94825 5.04753 5.31976 5.33342 5.66453 5.69443 5.75791 6.20818 6.50862 6.72175 6.90767 7.47403 7.56404 8.95211 Molecular weight = 210.12amu Principal moments of inertia in cm(-1) A = 0.071479 B = 0.005641 C = 0.005455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 391.627558 B = 4962.339497 C = 5131.812077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.217 3.783 3 H -0.002 1.002 4 C -0.515 4.515 5 H 0.063 0.937 6 C 0.006 3.994 7 N -0.926 5.926 8 Si 0.965 3.035 9 H -0.271 1.271 10 H -0.288 1.288 11 H -0.269 1.269 12 N -0.673 5.673 13 C 0.056 3.944 14 C 0.125 3.875 15 N -0.287 5.287 16 C -0.033 4.033 17 C -0.066 4.066 18 N -0.317 5.317 19 N -0.134 5.134 20 H 0.019 0.981 21 H 0.038 0.962 22 H 0.061 0.939 23 H 0.261 0.739 24 H 0.340 0.660 25 H 0.020 0.980 26 H 0.054 0.946 27 H 0.146 0.854 28 H 0.112 0.888 29 H 0.237 0.763 30 H 0.222 0.778 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.037 -4.075 -12.884 15.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.108 3.892 3 H 0.016 0.984 4 C -0.553 4.553 5 H 0.082 0.918 6 C -0.192 4.192 7 N -0.566 5.566 8 Si 0.790 3.210 9 H -0.197 1.197 10 H -0.214 1.214 11 H -0.194 1.194 12 N -0.304 5.304 13 C -0.075 4.075 14 C 0.004 3.996 15 N -0.082 5.082 16 C -0.184 4.184 17 C -0.225 4.225 18 N -0.182 5.182 19 N -0.114 5.114 20 H 0.038 0.962 21 H 0.058 0.942 22 H 0.080 0.920 23 H 0.070 0.930 24 H 0.158 0.842 25 H 0.038 0.962 26 H 0.073 0.927 27 H 0.163 0.837 28 H 0.130 0.870 29 H 0.253 0.747 30 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges 6.113 -3.518 -12.391 14.257 hybrid contribution 0.103 -0.169 0.742 0.768 sum 6.216 -3.687 -11.648 13.708 Atomic orbital electron populations 1.22262 1.00043 0.99594 0.99922 1.18935 0.90029 0.92698 0.87529 0.98407 1.21404 1.30645 1.12689 0.90611 0.91848 1.25780 0.95402 0.95828 1.02177 1.70022 1.38054 1.24390 1.24138 0.85509 0.78695 0.78653 0.78124 1.19665 1.21413 1.19375 1.60645 1.57994 1.09275 1.02510 1.21964 0.99063 0.95924 0.90509 1.22216 1.07483 0.89765 0.80123 1.47721 1.07889 1.29491 1.23052 1.24529 0.95888 1.03271 0.94756 1.24306 0.92715 1.01617 1.03813 1.75043 1.14088 1.19303 1.09738 1.78307 1.16024 1.07385 1.09649 0.96169 0.94249 0.92017 0.93017 0.84239 0.96180 0.92740 0.83658 0.86954 0.74711 0.76169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.61 8.94 71.98 0.64 -6.97 16 2 C 0.22 10.69 2.57 44.17 0.11 10.80 16 3 H 0.00 -0.11 7.80 -2.39 -0.02 -0.13 16 4 C -0.51 -27.60 8.84 25.60 0.23 -27.38 16 5 H 0.06 3.32 7.81 -2.91 -0.02 3.30 16 6 C 0.01 0.34 5.30 84.65 0.45 0.79 16 7 N -0.93 -53.26 11.32 21.44 0.24 -53.01 16 8 Si 0.96 42.86 29.54 68.60 2.03 44.89 16 9 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 10 H -0.29 -12.72 7.11 99.48 0.71 -12.01 16 11 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 12 N -0.67 -25.72 6.23 -495.42 -3.09 -28.81 16 13 C 0.06 1.86 5.61 86.30 0.48 2.34 16 14 C 0.12 2.81 6.72 86.38 0.58 3.39 16 15 N -0.29 -7.29 3.44 -347.73 -1.20 -8.49 16 16 C -0.03 -0.60 11.57 83.49 0.97 0.36 16 17 C -0.07 -1.42 12.05 83.73 1.01 -0.41 16 18 N -0.32 -9.98 12.41 -58.26 -0.72 -10.71 16 19 N -0.13 -4.45 12.91 37.02 0.48 -3.97 16 20 H 0.02 0.87 7.45 -2.39 -0.02 0.85 16 21 H 0.04 1.76 8.13 -2.39 -0.02 1.74 16 22 H 0.06 3.34 6.07 -2.39 -0.01 3.32 16 23 H 0.26 14.35 8.31 -92.71 -0.77 13.58 16 24 H 0.34 11.69 8.47 -89.69 -0.76 10.93 16 25 H 0.02 0.74 7.41 -2.39 -0.02 0.73 16 26 H 0.05 1.98 8.05 -2.39 -0.02 1.96 16 27 H 0.15 2.40 8.07 -2.39 -0.02 2.38 16 28 H 0.11 2.21 8.14 -2.39 -0.02 2.19 16 29 H 0.24 1.83 8.06 -2.91 -0.02 1.81 16 30 H 0.22 2.78 8.06 -2.91 -0.02 2.75 16 Total: -1.00 -68.16 260.62 2.59 -65.58 By element: Atomic # 1 Polarization: 11.21 SS G_CDS: 0.37 Total: 11.59 kcal Atomic # 6 Polarization: -21.54 SS G_CDS: 4.47 Total: -17.07 kcal Atomic # 7 Polarization: -100.70 SS G_CDS: -4.29 Total: -104.99 kcal Atomic # 14 Polarization: 42.86 SS G_CDS: 2.03 Total: 44.89 kcal Total: -68.16 2.59 -65.58 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000159618250.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.798 kcal (2) G-P(sol) polarization free energy of solvation -68.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.575 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds