Wall clock time and date at job start Mon Mar 30 2020 02:49:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.50708 * 109.47141 * 239.99699 * 2 1 3 5 5 H 1.07995 * 119.99755 * 240.00383 * 4 2 1 6 6 C 1.37873 * 119.99729 * 60.00006 * 4 2 1 7 7 N 1.31516 * 119.99909 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99980 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.46921 * 60.00420 * 8 6 4 10 10 H 1.48496 * 109.46933 * 180.02562 * 8 6 4 11 11 H 1.48498 * 109.46946 * 300.00103 * 8 6 4 12 12 N 1.46906 * 109.47302 * 120.00193 * 2 1 3 13 13 C 1.46904 * 110.99716 * 274.99847 * 12 2 1 14 14 C 1.53002 * 109.47049 * 179.97438 * 13 12 2 15 15 N 1.46500 * 109.46996 * 180.02562 * 14 13 12 16 16 C 1.35310 * 125.86807 * 125.00081 * 15 14 13 17 17 C 1.35350 * 106.17576 * 179.97438 * 16 15 14 18 18 N 1.33775 * 106.49588 * 359.97438 * 17 16 15 19 19 N 1.28635 * 108.88611 * 359.74149 * 18 17 16 20 20 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 21 21 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 22 22 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 23 23 H 0.97002 * 119.99804 * 180.02562 * 7 6 4 24 24 H 1.00900 * 110.99634 * 38.94573 * 12 2 1 25 25 H 1.08996 * 109.46868 * 300.00084 * 13 12 2 26 26 H 1.09007 * 109.46973 * 59.99616 * 13 12 2 27 27 H 1.09003 * 109.46890 * 299.99878 * 14 13 12 28 28 H 1.08998 * 109.46947 * 59.99624 * 14 13 12 29 29 H 1.08003 * 126.91345 * 359.97438 * 16 15 14 30 30 H 1.08003 * 126.75096 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.6532 -1.5886 -1.1313 6 6 1.6992 -0.2395 -2.4827 7 7 0.9435 0.8301 -2.6034 8 14 2.3225 -1.1197 -4.0079 9 1 1.8279 -2.5199 -4.0081 10 1 1.8278 -0.4194 -5.2204 11 1 3.8074 -1.1191 -4.0077 12 7 2.0197 -0.6926 1.1994 13 6 2.0825 0.2226 2.3469 14 6 2.5951 -0.5332 3.5745 15 7 2.6572 0.3793 4.7190 16 6 2.0612 0.1881 5.9186 17 6 2.3775 1.2665 6.6729 18 7 3.1420 2.0540 5.9081 19 7 3.2938 1.4974 4.7584 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3633 0.5139 0.8900 22 1 -0.3634 -1.0277 0.0005 23 1 0.7089 1.1613 -3.4844 24 1 1.4495 -1.4979 1.4101 25 1 2.7589 1.0461 2.1182 26 1 1.0871 0.6164 2.5525 27 1 1.9184 -1.3565 3.8030 28 1 3.5904 -0.9273 3.3691 29 1 1.4549 -0.6553 6.2146 30 1 2.0726 1.4542 7.6919 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000159618374.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:14 Heat of formation + Delta-G solvation = 98.438547 kcal Electronic energy + Delta-G solvation = -13388.152737 eV Core-core repulsion = 11027.879562 eV Total energy + Delta-G solvation = -2360.273175 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.118 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -43.15262 -36.74668 -34.61225 -32.49163 -30.98457 -29.86156 -26.95964 -25.21116 -23.26653 -22.52360 -21.05176 -20.34734 -17.46528 -16.68005 -16.04043 -15.05956 -14.83320 -14.68573 -14.40925 -13.57008 -13.22725 -12.51299 -12.22074 -11.78016 -11.67742 -11.28021 -10.95888 -10.88631 -10.80540 -10.53985 -10.23847 -10.13023 -9.87069 -9.36205 -9.11343 -8.41645 -7.48921 -6.03963 -4.08288 1.67190 2.41805 2.63140 3.31673 3.36151 3.38947 4.38602 4.42212 4.60379 4.91166 5.02869 5.22438 5.27314 5.28183 5.40970 5.66232 5.99134 6.12497 6.25292 6.57891 6.63132 6.72427 6.96794 7.20586 7.62982 7.77620 8.15048 8.34437 8.46689 8.58426 8.97739 9.57242 11.03194 Molecular weight = 210.12amu Principal moments of inertia in cm(-1) A = 0.072782 B = 0.005564 C = 0.005519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 384.615572 B = 5030.825874 C = 5072.545900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.213 3.787 3 H 0.036 0.964 4 C -0.499 4.499 5 H 0.063 0.937 6 C 0.056 3.944 7 N -0.897 5.897 8 Si 0.900 3.100 9 H -0.278 1.278 10 H -0.288 1.288 11 H -0.277 1.277 12 N -0.679 5.679 13 C 0.050 3.950 14 C 0.114 3.886 15 N -0.281 5.281 16 C -0.055 4.055 17 C -0.059 4.059 18 N -0.281 5.281 19 N -0.077 5.077 20 H 0.091 0.909 21 H 0.004 0.996 22 H 0.029 0.971 23 H 0.261 0.739 24 H 0.326 0.674 25 H 0.084 0.916 26 H 0.027 0.973 27 H 0.101 0.899 28 H 0.109 0.891 29 H 0.188 0.812 30 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.625 -4.079 13.720 14.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.106 3.894 3 H 0.054 0.946 4 C -0.538 4.538 5 H 0.081 0.919 6 C -0.145 4.145 7 N -0.536 5.536 8 Si 0.728 3.272 9 H -0.203 1.203 10 H -0.214 1.214 11 H -0.202 1.202 12 N -0.309 5.309 13 C -0.081 4.081 14 C -0.007 4.007 15 N -0.075 5.075 16 C -0.206 4.206 17 C -0.216 4.216 18 N -0.146 5.146 19 N -0.058 5.058 20 H 0.110 0.890 21 H 0.023 0.977 22 H 0.048 0.952 23 H 0.071 0.929 24 H 0.142 0.858 25 H 0.102 0.898 26 H 0.045 0.955 27 H 0.120 0.880 28 H 0.127 0.873 29 H 0.205 0.795 30 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges 0.863 -2.894 12.584 12.941 hybrid contribution -1.548 -1.225 -0.050 1.975 sum -0.685 -4.119 12.534 13.211 Atomic orbital electron populations 1.22442 1.00500 0.99282 1.00663 1.19201 0.89723 0.94603 0.85896 0.94583 1.21067 1.30642 1.12635 0.89438 0.91852 1.24957 0.95234 0.95165 0.99127 1.69871 1.37052 1.23046 1.23639 0.86523 0.79236 0.79512 0.81890 1.20341 1.21411 1.20209 1.60832 1.58293 1.08861 1.02906 1.22120 0.99538 0.96731 0.89726 1.22285 1.05378 0.90152 0.82909 1.47625 1.31834 1.16088 1.11989 1.23701 1.05802 1.04212 0.86921 1.23590 1.02707 0.93162 1.02181 1.75126 1.16420 1.24975 0.98114 1.78364 1.15894 0.95154 1.16357 0.89030 0.97707 0.95184 0.92878 0.85787 0.89753 0.95521 0.88028 0.87300 0.79498 0.79628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.95 8.94 37.16 0.33 -3.62 16 2 C 0.21 5.20 2.57 -68.86 -0.18 5.02 16 3 H 0.04 0.99 7.80 -51.93 -0.40 0.58 16 4 C -0.50 -13.47 8.84 -34.44 -0.30 -13.77 16 5 H 0.06 1.70 7.81 -52.49 -0.41 1.29 16 6 C 0.06 1.53 5.30 -17.82 -0.09 1.44 16 7 N -0.90 -25.41 11.32 55.43 0.63 -24.78 16 8 Si 0.90 21.15 29.54 -169.99 -5.02 16.13 16 9 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 10 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 11 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 12 N -0.68 -13.25 6.23 -107.94 -0.67 -13.92 16 13 C 0.05 0.83 5.61 -3.82 -0.02 0.81 16 14 C 0.11 1.43 6.71 -4.04 -0.03 1.40 16 15 N -0.28 -3.85 3.44 -61.26 -0.21 -4.06 16 16 C -0.05 -0.59 11.57 -17.05 -0.20 -0.79 16 17 C -0.06 -0.69 12.05 -17.73 -0.21 -0.91 16 18 N -0.28 -4.52 12.41 30.24 0.38 -4.15 16 19 N -0.08 -1.31 12.93 60.35 0.78 -0.53 16 20 H 0.09 2.40 6.07 -51.93 -0.32 2.08 16 21 H 0.00 0.08 7.45 -51.93 -0.39 -0.30 16 22 H 0.03 0.66 8.13 -51.93 -0.42 0.23 16 23 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 24 H 0.33 5.72 8.47 -39.29 -0.33 5.39 16 25 H 0.08 1.60 8.04 -51.93 -0.42 1.19 16 26 H 0.03 0.46 7.44 -51.93 -0.39 0.08 16 27 H 0.10 0.95 8.07 -51.93 -0.42 0.53 16 28 H 0.11 1.34 8.14 -51.93 -0.42 0.91 16 29 H 0.19 1.19 8.06 -52.48 -0.42 0.77 16 30 H 0.19 1.47 8.06 -52.48 -0.42 1.04 16 LS Contribution 260.63 15.07 3.93 3.93 Total: -1.00 -30.87 260.63 -4.80 -35.67 By element: Atomic # 1 Polarization: 6.02 SS G_CDS: -3.90 Total: 2.12 kcal Atomic # 6 Polarization: -9.71 SS G_CDS: -0.70 Total: -10.42 kcal Atomic # 7 Polarization: -48.33 SS G_CDS: 0.90 Total: -47.43 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 3.93 Total: 3.93 kcal Total: -30.87 -4.80 -35.67 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000159618374.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.104 kcal (2) G-P(sol) polarization free energy of solvation -30.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.666 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds