Wall clock time and date at job start Mon Mar 30 2020 02:49:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.50708 * 109.47141 * 239.99699 * 2 1 3 5 5 H 1.07995 * 119.99755 * 240.00383 * 4 2 1 6 6 C 1.37873 * 119.99729 * 60.00006 * 4 2 1 7 7 N 1.31516 * 119.99909 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99980 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.46921 * 60.00420 * 8 6 4 10 10 H 1.48496 * 109.46933 * 180.02562 * 8 6 4 11 11 H 1.48498 * 109.46946 * 300.00103 * 8 6 4 12 12 N 1.46906 * 109.47302 * 120.00193 * 2 1 3 13 13 C 1.46904 * 110.99716 * 274.99847 * 12 2 1 14 14 C 1.53002 * 109.47049 * 179.97438 * 13 12 2 15 15 N 1.46500 * 109.46996 * 180.02562 * 14 13 12 16 16 C 1.35310 * 125.86807 * 125.00081 * 15 14 13 17 17 C 1.35350 * 106.17576 * 179.97438 * 16 15 14 18 18 N 1.33775 * 106.49588 * 359.97438 * 17 16 15 19 19 N 1.28635 * 108.88611 * 359.74149 * 18 17 16 20 20 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 21 21 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 22 22 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 23 23 H 0.97002 * 119.99804 * 180.02562 * 7 6 4 24 24 H 1.00900 * 110.99634 * 38.94573 * 12 2 1 25 25 H 1.08996 * 109.46868 * 300.00084 * 13 12 2 26 26 H 1.09007 * 109.46973 * 59.99616 * 13 12 2 27 27 H 1.09003 * 109.46890 * 299.99878 * 14 13 12 28 28 H 1.08998 * 109.46947 * 59.99624 * 14 13 12 29 29 H 1.08003 * 126.91345 * 359.97438 * 16 15 14 30 30 H 1.08003 * 126.75096 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.6532 -1.5886 -1.1313 6 6 1.6992 -0.2395 -2.4827 7 7 0.9435 0.8301 -2.6034 8 14 2.3225 -1.1197 -4.0079 9 1 1.8279 -2.5199 -4.0081 10 1 1.8278 -0.4194 -5.2204 11 1 3.8074 -1.1191 -4.0077 12 7 2.0197 -0.6926 1.1994 13 6 2.0825 0.2226 2.3469 14 6 2.5951 -0.5332 3.5745 15 7 2.6572 0.3793 4.7190 16 6 2.0612 0.1881 5.9186 17 6 2.3775 1.2665 6.6729 18 7 3.1420 2.0540 5.9081 19 7 3.2938 1.4974 4.7584 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3633 0.5139 0.8900 22 1 -0.3634 -1.0277 0.0005 23 1 0.7089 1.1613 -3.4844 24 1 1.4495 -1.4979 1.4101 25 1 2.7589 1.0461 2.1182 26 1 1.0871 0.6164 2.5525 27 1 1.9184 -1.3565 3.8030 28 1 3.5904 -0.9273 3.3691 29 1 1.4549 -0.6553 6.2146 30 1 2.0726 1.4542 7.6919 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000159618374.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:14 Heat of formation + Delta-G solvation = 75.308579 kcal Electronic energy + Delta-G solvation = -13389.155728 eV Core-core repulsion = 11027.879562 eV Total energy + Delta-G solvation = -2361.276165 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.118 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -44.14507 -38.30626 -35.98521 -34.28325 -31.94084 -31.43873 -28.42108 -27.25128 -24.57299 -23.49554 -22.22676 -22.14885 -18.61969 -18.29162 -17.41725 -16.70257 -16.18859 -15.88306 -15.57172 -15.13530 -14.68534 -14.11574 -13.61928 -13.55333 -13.03634 -12.81403 -12.70172 -12.56555 -12.25093 -12.14941 -11.93019 -11.80548 -11.20517 -10.97892 -10.49694 -10.30578 -9.13567 -8.11064 -6.23015 0.71685 1.44338 1.46467 1.47705 1.54684 1.67331 2.44285 3.18171 3.44484 3.57099 3.81364 4.00562 4.23795 4.29425 4.35608 4.53970 4.68763 4.77137 4.83101 4.98602 5.03898 5.30098 5.35963 5.67012 5.69772 5.76100 6.21568 6.51655 6.76406 6.91201 7.47265 7.57216 8.94696 Molecular weight = 210.12amu Principal moments of inertia in cm(-1) A = 0.072782 B = 0.005564 C = 0.005519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 384.615572 B = 5030.825874 C = 5072.545900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.216 3.784 3 H -0.005 1.005 4 C -0.516 4.516 5 H 0.062 0.938 6 C 0.007 3.993 7 N -0.925 5.925 8 Si 0.964 3.036 9 H -0.267 1.267 10 H -0.287 1.287 11 H -0.275 1.275 12 N -0.676 5.676 13 C 0.058 3.942 14 C 0.124 3.876 15 N -0.287 5.287 16 C -0.033 4.033 17 C -0.067 4.067 18 N -0.318 5.318 19 N -0.135 5.135 20 H 0.060 0.940 21 H 0.022 0.978 22 H 0.041 0.959 23 H 0.261 0.739 24 H 0.342 0.658 25 H 0.050 0.950 26 H 0.022 0.978 27 H 0.147 0.853 28 H 0.111 0.889 29 H 0.239 0.761 30 H 0.222 0.778 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.237 -6.225 15.038 16.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.107 3.893 3 H 0.013 0.987 4 C -0.555 4.555 5 H 0.080 0.920 6 C -0.191 4.191 7 N -0.565 5.565 8 Si 0.789 3.211 9 H -0.192 1.192 10 H -0.213 1.213 11 H -0.200 1.200 12 N -0.307 5.307 13 C -0.073 4.073 14 C 0.004 3.996 15 N -0.081 5.081 16 C -0.185 4.185 17 C -0.225 4.225 18 N -0.183 5.183 19 N -0.114 5.114 20 H 0.079 0.921 21 H 0.041 0.959 22 H 0.060 0.940 23 H 0.070 0.930 24 H 0.160 0.840 25 H 0.069 0.931 26 H 0.040 0.960 27 H 0.165 0.835 28 H 0.129 0.871 29 H 0.255 0.745 30 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges 0.266 -5.044 13.914 14.802 hybrid contribution -1.392 -0.553 -0.347 1.538 sum -1.126 -5.597 13.566 14.719 Atomic orbital electron populations 1.22237 0.99602 0.99755 0.99994 1.18936 0.90310 0.92556 0.87466 0.98720 1.21414 1.30629 1.12684 0.90730 0.92024 1.25764 0.95412 0.95836 1.02124 1.70017 1.38062 1.24322 1.24129 0.85524 0.78570 0.78775 0.78208 1.19164 1.21303 1.20004 1.60579 1.58249 1.09384 1.02534 1.21951 0.98674 0.96031 0.90654 1.22215 1.06449 0.89982 0.80973 1.47727 1.31803 1.15540 1.13062 1.24542 1.04044 1.04820 0.85073 1.24325 1.01784 0.92873 1.03544 1.75057 1.17940 1.26520 0.98743 1.78351 1.18612 0.97149 1.17327 0.92112 0.95910 0.93955 0.93009 0.83956 0.93093 0.96001 0.83496 0.87069 0.74462 0.76157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.26 8.94 71.98 0.64 -6.62 16 2 C 0.22 10.66 2.57 44.17 0.11 10.77 16 3 H -0.01 -0.30 7.80 -2.39 -0.02 -0.31 16 4 C -0.52 -27.93 8.84 25.60 0.23 -27.71 16 5 H 0.06 3.28 7.81 -2.91 -0.02 3.26 16 6 C 0.01 0.37 5.30 84.65 0.45 0.82 16 7 N -0.93 -53.34 11.32 21.45 0.24 -53.10 16 8 Si 0.96 43.30 29.54 68.60 2.03 45.32 16 9 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 10 H -0.29 -12.76 7.11 99.48 0.71 -12.06 16 11 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 12 N -0.68 -25.84 6.23 -495.41 -3.09 -28.93 16 13 C 0.06 1.91 5.61 86.30 0.48 2.39 16 14 C 0.12 2.81 6.71 86.38 0.58 3.39 16 15 N -0.29 -7.29 3.44 -347.73 -1.20 -8.48 16 16 C -0.03 -0.59 11.57 83.49 0.97 0.38 16 17 C -0.07 -1.42 12.05 83.73 1.01 -0.41 16 18 N -0.32 -10.12 12.41 -58.25 -0.72 -10.84 16 19 N -0.14 -4.57 12.93 37.02 0.48 -4.09 16 20 H 0.06 3.22 6.07 -2.39 -0.01 3.20 16 21 H 0.02 0.93 7.45 -2.39 -0.02 0.91 16 22 H 0.04 1.81 8.13 -2.38 -0.02 1.79 16 23 H 0.26 14.39 8.31 -92.71 -0.77 13.62 16 24 H 0.34 11.21 8.47 -89.69 -0.76 10.45 16 25 H 0.05 2.02 8.04 -2.39 -0.02 2.00 16 26 H 0.02 0.74 7.44 -2.38 -0.02 0.73 16 27 H 0.15 2.01 8.07 -2.39 -0.02 1.99 16 28 H 0.11 2.50 8.14 -2.39 -0.02 2.48 16 29 H 0.24 1.51 8.06 -2.91 -0.02 1.49 16 30 H 0.22 2.71 8.06 -2.91 -0.02 2.69 16 Total: -1.00 -69.66 260.63 2.59 -67.08 By element: Atomic # 1 Polarization: 9.65 SS G_CDS: 0.37 Total: 10.03 kcal Atomic # 6 Polarization: -21.46 SS G_CDS: 4.47 Total: -16.99 kcal Atomic # 7 Polarization: -101.16 SS G_CDS: -4.28 Total: -105.44 kcal Atomic # 14 Polarization: 43.30 SS G_CDS: 2.03 Total: 45.32 kcal Total: -69.66 2.59 -67.08 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000159618374.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.384 kcal (2) G-P(sol) polarization free energy of solvation -69.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.075 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds