Wall clock time and date at job start Mon Mar 30 2020 02:48:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 N 1.46902 * 109.47094 * 239.99537 * 2 1 3 5 5 C 1.50706 * 109.47238 * 120.00151 * 2 1 3 6 6 N 1.33238 * 125.52827 * 74.69089 * 5 2 1 7 7 C 1.30835 * 109.82805 * 179.85881 * 6 5 2 8 8 N 1.34428 * 108.07601 * 0.40059 * 7 6 5 9 9 C 1.46500 * 126.81834 * 179.79196 * 8 7 6 10 10 C 1.52993 * 109.47341 * 84.95920 * 9 8 7 11 11 C 1.50697 * 109.47412 * 179.97438 * 10 9 8 12 12 H 1.08001 * 120.00222 * 359.97438 * 11 10 9 13 13 C 1.37878 * 120.00388 * 179.97438 * 11 10 9 14 14 N 1.31505 * 120.00591 * 179.97438 * 13 11 10 15 15 Si 1.86802 * 119.99735 * 0.02562 * 13 11 10 16 16 H 1.48493 * 109.47350 * 89.99804 * 15 13 11 17 17 H 1.48503 * 109.47294 * 210.00020 * 15 13 11 18 18 H 1.48507 * 109.47184 * 329.99538 * 15 13 11 19 19 N 1.30707 * 125.52332 * 255.00049 * 5 2 1 20 20 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 21 21 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 22 22 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 23 23 H 1.00896 * 111.00594 * 296.04777 * 4 2 1 24 24 H 1.00900 * 110.99487 * 60.00820 * 4 2 1 25 25 H 1.08007 * 125.95659 * 180.12379 * 7 6 5 26 26 H 1.08998 * 109.46591 * 204.96020 * 9 8 7 27 27 H 1.08997 * 109.46984 * 324.95475 * 9 8 7 28 28 H 1.08997 * 109.47224 * 300.00156 * 10 9 8 29 29 H 1.09004 * 109.47139 * 59.99621 * 10 9 8 30 30 H 0.96993 * 120.00883 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0196 -0.6926 -1.1994 5 6 2.0324 -0.7105 1.2305 6 7 2.0205 -2.0289 1.4223 7 6 2.5313 -2.3116 2.5932 8 7 2.8779 -1.1564 3.1870 9 6 3.4834 -0.9972 4.5115 10 6 5.0008 -1.1583 4.4014 11 6 5.6236 -0.9939 5.7637 12 1 4.9996 -0.7940 6.6223 13 6 6.9901 -1.0987 5.9143 14 7 7.5337 -0.9547 7.1031 15 14 8.0696 -1.4437 4.4293 16 1 8.4859 -0.1595 3.8108 17 1 9.2737 -2.2001 4.8576 18 1 7.3074 -2.2461 3.4390 19 7 2.5451 -0.1327 2.2849 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3633 0.5139 0.8900 22 1 -0.3634 -1.0277 0.0005 23 1 1.7502 -1.6649 -1.1909 24 1 1.6962 -0.2350 -2.0385 25 1 2.6493 -3.3003 3.0117 26 1 3.2505 -0.0060 4.9005 27 1 3.0855 -1.7550 5.1863 28 1 5.2336 -2.1495 4.0123 29 1 5.3986 -0.4004 3.7265 30 1 8.4950 -1.0288 7.2091 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000162944319.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:04 Heat of formation + Delta-G solvation = 75.917053 kcal Electronic energy + Delta-G solvation = -13406.585913 eV Core-core repulsion = 11045.336133 eV Total energy + Delta-G solvation = -2361.249780 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.118 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -41.72590 -36.32462 -34.51782 -32.51062 -30.95512 -29.84999 -28.59956 -25.54825 -23.39338 -22.12361 -20.59199 -19.78216 -17.30543 -16.61303 -15.58604 -15.41413 -14.63566 -14.27959 -14.14206 -13.66451 -13.39784 -13.23852 -12.76151 -12.11954 -11.92546 -11.71755 -11.39198 -11.09080 -10.78566 -10.29566 -10.01916 -9.67269 -9.44832 -9.39489 -9.08401 -8.72436 -8.69497 -6.20779 -4.22780 2.02556 2.78709 3.17940 3.23777 3.31361 3.35403 4.27197 4.32451 4.54774 4.85378 5.04890 5.12576 5.18920 5.26567 5.48858 5.66111 5.87486 5.92230 6.09337 6.17749 6.50949 6.74653 6.90501 7.03619 7.07554 7.26034 7.42185 7.56443 8.29003 8.45031 8.79419 9.39550 10.91530 Molecular weight = 210.12amu Principal moments of inertia in cm(-1) A = 0.052664 B = 0.006682 C = 0.006319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 531.544531 B = 4189.566339 C = 4430.262267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.188 3.812 3 H 0.099 0.901 4 N -0.837 5.837 5 C 0.214 3.786 6 N -0.550 5.550 7 C 0.248 3.752 8 N -0.360 5.360 9 C 0.134 3.866 10 C -0.022 4.022 11 C -0.529 4.529 12 H 0.077 0.923 13 C 0.075 3.925 14 N -0.895 5.895 15 Si 0.879 3.121 16 H -0.275 1.275 17 H -0.285 1.285 18 H -0.266 1.266 19 N -0.314 5.314 20 H 0.062 0.938 21 H 0.062 0.938 22 H 0.062 0.938 23 H 0.352 0.648 24 H 0.343 0.657 25 H 0.215 0.785 26 H 0.094 0.906 27 H 0.094 0.906 28 H 0.023 0.977 29 H 0.022 0.978 30 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.063 -1.099 -12.046 17.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.074 3.926 3 H 0.117 0.883 4 N -0.368 5.368 5 C -0.069 4.069 6 N -0.279 5.279 7 C -0.048 4.048 8 N -0.149 5.149 9 C 0.014 3.986 10 C -0.061 4.061 11 C -0.568 4.568 12 H 0.095 0.905 13 C -0.128 4.128 14 N -0.532 5.532 15 Si 0.706 3.294 16 H -0.201 1.201 17 H -0.210 1.210 18 H -0.191 1.191 19 N -0.143 5.143 20 H 0.081 0.919 21 H 0.081 0.919 22 H 0.081 0.919 23 H 0.166 0.834 24 H 0.157 0.843 25 H 0.231 0.769 26 H 0.112 0.888 27 H 0.112 0.888 28 H 0.041 0.959 29 H 0.040 0.960 30 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -11.141 -0.373 -11.705 16.164 hybrid contribution -0.103 -0.575 -0.492 0.764 sum -11.244 -0.948 -12.198 16.616 Atomic orbital electron populations 1.22562 0.96111 1.02781 1.02455 1.19421 0.91996 0.96650 0.84528 0.88335 1.58686 1.67511 1.07647 1.02998 1.23807 0.98592 0.89023 0.95485 1.70192 1.25516 1.15010 1.17135 1.25882 0.95123 0.93961 0.89865 1.50898 1.43971 1.03995 1.16042 1.22182 0.95938 1.04213 0.76234 1.19946 0.89446 0.97546 0.99159 1.20821 0.92823 1.50749 0.92359 0.90459 1.24925 0.97929 0.94112 0.95784 1.69877 1.11816 1.49276 1.22268 0.86792 0.80253 0.79078 0.83283 1.20065 1.21034 1.19095 1.77944 1.21482 1.13142 1.01752 0.91863 0.91884 0.91880 0.83427 0.84350 0.76860 0.88804 0.88758 0.95889 0.95978 0.92349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.85 9.46 37.16 0.35 -1.50 16 2 C 0.19 2.45 3.91 -68.86 -0.27 2.18 16 3 H 0.10 1.27 8.14 -51.93 -0.42 0.85 16 4 N -0.84 -9.81 9.24 -5.65 -0.05 -9.87 16 5 C 0.21 3.65 6.97 -156.86 -1.09 2.55 16 6 N -0.55 -9.27 10.94 -11.97 -0.13 -9.40 16 7 C 0.25 4.02 12.66 -90.65 -1.15 2.88 16 8 N -0.36 -6.62 3.64 -62.63 -0.23 -6.85 16 9 C 0.13 2.53 6.44 -4.05 -0.03 2.50 16 10 C -0.02 -0.52 4.36 -27.89 -0.12 -0.64 16 11 C -0.53 -14.30 9.66 -34.44 -0.33 -14.63 16 12 H 0.08 2.19 7.99 -52.49 -0.42 1.77 16 13 C 0.08 2.13 5.47 -17.82 -0.10 2.03 16 14 N -0.89 -26.68 13.96 55.43 0.77 -25.90 16 15 Si 0.88 21.53 27.47 -169.99 -4.67 16.86 16 16 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 17 H -0.28 -6.85 7.11 56.52 0.40 -6.44 16 18 H -0.27 -6.37 6.54 56.52 0.37 -6.00 16 19 N -0.31 -6.04 12.70 32.42 0.41 -5.63 16 20 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 21 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 22 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 23 H 0.35 4.12 8.76 -39.29 -0.34 3.78 16 24 H 0.34 2.94 9.04 -39.29 -0.36 2.58 16 25 H 0.22 2.56 8.06 -52.48 -0.42 2.14 16 26 H 0.09 1.78 8.14 -51.93 -0.42 1.36 16 27 H 0.09 1.55 8.14 -51.93 -0.42 1.12 16 28 H 0.02 0.53 7.20 -51.93 -0.37 0.15 16 29 H 0.02 0.54 7.57 -51.93 -0.39 0.15 16 30 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 LS Contribution 263.41 15.07 3.97 3.97 Total: -1.00 -31.96 263.41 -6.67 -38.63 By element: Atomic # 1 Polarization: 6.83 SS G_CDS: -4.01 Total: 2.81 kcal Atomic # 6 Polarization: -1.89 SS G_CDS: -2.74 Total: -4.63 kcal Atomic # 7 Polarization: -58.42 SS G_CDS: 0.77 Total: -57.65 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -4.67 Total: 16.86 kcal Total LS contribution 3.97 Total: 3.97 kcal Total: -31.96 -6.67 -38.63 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000162944319.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.551 kcal (2) G-P(sol) polarization free energy of solvation -31.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.634 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds