Wall clock time and date at job start Mon Mar 30 2020 02:48:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 N 1.46902 * 109.47094 * 239.99537 * 2 1 3 5 5 C 1.50706 * 109.47238 * 120.00151 * 2 1 3 6 6 N 1.33238 * 125.52827 * 74.69089 * 5 2 1 7 7 C 1.30835 * 109.82805 * 179.85881 * 6 5 2 8 8 N 1.34428 * 108.07601 * 0.40059 * 7 6 5 9 9 C 1.46500 * 126.81834 * 179.79196 * 8 7 6 10 10 C 1.52993 * 109.47341 * 84.95920 * 9 8 7 11 11 C 1.50697 * 109.47412 * 179.97438 * 10 9 8 12 12 H 1.08001 * 120.00222 * 359.97438 * 11 10 9 13 13 C 1.37878 * 120.00388 * 179.97438 * 11 10 9 14 14 N 1.31505 * 120.00591 * 179.97438 * 13 11 10 15 15 Si 1.86802 * 119.99735 * 0.02562 * 13 11 10 16 16 H 1.48493 * 109.47350 * 89.99804 * 15 13 11 17 17 H 1.48503 * 109.47294 * 210.00020 * 15 13 11 18 18 H 1.48507 * 109.47184 * 329.99538 * 15 13 11 19 19 N 1.30707 * 125.52332 * 255.00049 * 5 2 1 20 20 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 21 21 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 22 22 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 23 23 H 1.00896 * 111.00594 * 296.04777 * 4 2 1 24 24 H 1.00900 * 110.99487 * 60.00820 * 4 2 1 25 25 H 1.08007 * 125.95659 * 180.12379 * 7 6 5 26 26 H 1.08998 * 109.46591 * 204.96020 * 9 8 7 27 27 H 1.08997 * 109.46984 * 324.95475 * 9 8 7 28 28 H 1.08997 * 109.47224 * 300.00156 * 10 9 8 29 29 H 1.09004 * 109.47139 * 59.99621 * 10 9 8 30 30 H 0.96993 * 120.00883 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0196 -0.6926 -1.1994 5 6 2.0324 -0.7105 1.2305 6 7 2.0205 -2.0289 1.4223 7 6 2.5313 -2.3116 2.5932 8 7 2.8779 -1.1564 3.1870 9 6 3.4834 -0.9972 4.5115 10 6 5.0008 -1.1583 4.4014 11 6 5.6236 -0.9939 5.7637 12 1 4.9996 -0.7940 6.6223 13 6 6.9901 -1.0987 5.9143 14 7 7.5337 -0.9547 7.1031 15 14 8.0696 -1.4437 4.4293 16 1 8.4859 -0.1595 3.8108 17 1 9.2737 -2.2001 4.8576 18 1 7.3074 -2.2461 3.4390 19 7 2.5451 -0.1327 2.2849 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3633 0.5139 0.8900 22 1 -0.3634 -1.0277 0.0005 23 1 1.7502 -1.6649 -1.1909 24 1 1.6962 -0.2350 -2.0385 25 1 2.6493 -3.3003 3.0117 26 1 3.2505 -0.0060 4.9005 27 1 3.0855 -1.7550 5.1863 28 1 5.2336 -2.1495 4.0123 29 1 5.3986 -0.4004 3.7265 30 1 8.4950 -1.0288 7.2091 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000162944319.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:04 Heat of formation + Delta-G solvation = 53.304990 kcal Electronic energy + Delta-G solvation = -13407.566446 eV Core-core repulsion = 11045.336133 eV Total energy + Delta-G solvation = -2362.230313 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.118 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -43.02690 -37.43570 -36.10609 -34.39366 -32.29576 -31.48852 -29.53907 -27.22000 -24.55788 -23.69811 -22.18594 -20.96450 -19.23586 -17.83065 -16.97700 -16.80488 -16.20674 -15.69631 -15.47582 -15.12088 -14.74631 -14.39263 -14.16239 -13.68424 -13.28501 -13.07247 -12.81403 -12.53220 -12.32769 -12.06552 -11.85715 -11.59211 -10.97360 -10.85484 -10.74292 -10.46541 -9.65703 -8.37026 -6.42637 0.72008 1.30509 1.33347 1.42546 1.44972 1.93356 2.28257 2.98501 3.16579 3.48952 3.82825 3.95699 4.13401 4.19374 4.28054 4.48625 4.56623 4.72135 4.93252 5.02281 5.13117 5.21248 5.33438 5.48008 5.50571 5.96830 6.14742 6.16828 6.64479 6.64668 7.14995 7.22955 8.78521 Molecular weight = 210.12amu Principal moments of inertia in cm(-1) A = 0.052664 B = 0.006682 C = 0.006319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 531.544531 B = 4189.566339 C = 4430.262267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.186 3.814 3 H 0.097 0.903 4 N -0.843 5.843 5 C 0.214 3.786 6 N -0.558 5.558 7 C 0.254 3.746 8 N -0.376 5.376 9 C 0.148 3.852 10 C -0.015 4.015 11 C -0.531 4.531 12 H 0.052 0.948 13 C 0.020 3.980 14 N -0.939 5.939 15 Si 0.940 3.060 16 H -0.276 1.276 17 H -0.277 1.277 18 H -0.254 1.254 19 N -0.356 5.356 20 H 0.092 0.908 21 H 0.054 0.946 22 H 0.059 0.941 23 H 0.352 0.648 24 H 0.361 0.639 25 H 0.254 0.746 26 H 0.085 0.915 27 H 0.121 0.879 28 H 0.030 0.970 29 H 0.005 0.995 30 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.819 -1.936 -13.917 19.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.071 3.929 3 H 0.115 0.885 4 N -0.377 5.377 5 C -0.069 4.069 6 N -0.287 5.287 7 C -0.042 4.042 8 N -0.165 5.165 9 C 0.027 3.973 10 C -0.053 4.053 11 C -0.569 4.569 12 H 0.071 0.929 13 C -0.179 4.179 14 N -0.579 5.579 15 Si 0.764 3.236 16 H -0.202 1.202 17 H -0.203 1.203 18 H -0.178 1.178 19 N -0.185 5.185 20 H 0.110 0.890 21 H 0.073 0.927 22 H 0.078 0.922 23 H 0.166 0.834 24 H 0.177 0.823 25 H 0.270 0.730 26 H 0.104 0.896 27 H 0.139 0.861 28 H 0.048 0.952 29 H 0.023 0.977 30 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -11.920 -1.206 -13.604 18.128 hybrid contribution 0.064 -0.310 0.082 0.327 sum -11.856 -1.516 -13.523 18.048 Atomic orbital electron populations 1.22464 0.93946 1.02852 1.03484 1.19565 0.93570 0.96101 0.83637 0.88507 1.58637 1.67886 1.07819 1.03359 1.24593 0.97083 0.89319 0.95913 1.70271 1.26000 1.14905 1.17491 1.26770 0.93310 0.94766 0.89393 1.50773 1.45126 1.04634 1.15947 1.21878 0.93334 1.04823 0.77237 1.19780 0.92239 0.97129 0.96189 1.21127 0.92794 1.49397 0.93584 0.92947 1.25754 0.99563 0.94271 0.98318 1.69998 1.12338 1.51136 1.24429 0.85821 0.78728 0.78970 0.80059 1.20169 1.20259 1.17813 1.77909 1.23319 1.14413 1.02851 0.88961 0.92714 0.92219 0.83380 0.82294 0.73042 0.89616 0.86104 0.95158 0.97669 0.92147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.09 9.46 71.98 0.68 -2.41 16 2 C 0.19 4.50 3.91 44.17 0.17 4.67 16 3 H 0.10 2.37 8.14 -2.39 -0.02 2.35 16 4 N -0.84 -17.95 9.24 -171.80 -1.59 -19.54 16 5 C 0.21 6.98 6.97 138.64 0.97 7.95 16 6 N -0.56 -17.63 10.94 -191.80 -2.10 -19.73 16 7 C 0.25 7.57 12.66 180.36 2.28 9.86 16 8 N -0.38 -13.23 3.64 -352.07 -1.28 -14.51 16 9 C 0.15 5.39 6.44 86.38 0.56 5.94 16 10 C -0.01 -0.67 4.36 29.84 0.13 -0.54 16 11 C -0.53 -28.74 9.66 25.60 0.25 -28.50 16 12 H 0.05 3.03 7.99 -2.91 -0.02 3.00 16 13 C 0.02 1.11 5.47 84.66 0.46 1.58 16 14 N -0.94 -56.71 13.96 21.45 0.30 -56.41 16 15 Si 0.94 43.98 27.47 68.60 1.88 45.86 16 16 H -0.28 -12.88 7.11 99.48 0.71 -12.18 16 17 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 18 H -0.25 -11.29 6.54 99.48 0.65 -10.64 16 19 N -0.36 -13.39 12.70 -51.33 -0.65 -14.05 16 20 H 0.09 1.16 8.14 -2.39 -0.02 1.15 16 21 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 22 H 0.06 1.15 8.14 -2.38 -0.02 1.13 16 23 H 0.35 7.49 8.76 -89.70 -0.79 6.71 16 24 H 0.36 5.27 9.04 -89.69 -0.81 4.46 16 25 H 0.25 5.09 8.06 -2.91 -0.02 5.06 16 26 H 0.09 3.24 8.14 -2.39 -0.02 3.22 16 27 H 0.12 3.72 8.14 -2.39 -0.02 3.70 16 28 H 0.03 1.32 7.20 -2.39 -0.02 1.30 16 29 H 0.00 0.24 7.57 -2.38 -0.02 0.22 16 30 H 0.27 15.21 8.31 -92.71 -0.77 14.44 16 Total: -1.00 -68.22 263.41 1.57 -66.65 By element: Atomic # 1 Polarization: 13.66 SS G_CDS: -0.50 Total: 13.16 kcal Atomic # 6 Polarization: -6.94 SS G_CDS: 5.50 Total: -1.44 kcal Atomic # 7 Polarization: -118.91 SS G_CDS: -5.32 Total: -124.23 kcal Atomic # 14 Polarization: 43.98 SS G_CDS: 1.88 Total: 45.86 kcal Total: -68.22 1.57 -66.65 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000162944319.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.955 kcal (2) G-P(sol) polarization free energy of solvation -68.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.650 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds