Wall clock time and date at job start Mon Mar 30 2020 02:36:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 119.99828 * 2 1 4 4 H 1.48500 * 109.47454 * 240.00357 * 3 2 1 5 5 H 1.48506 * 109.47297 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47261 * 120.00350 * 3 2 1 7 7 C 1.37875 * 120.00192 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00135 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00046 * 359.97438 * 7 2 1 10 10 C 1.53006 * 109.47184 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.47127 * 180.02562 * 10 9 7 12 12 N 1.46496 * 109.46953 * 179.97438 * 11 10 9 13 13 C 1.34436 * 126.82027 * 125.00332 * 12 11 10 14 14 N 1.30831 * 108.07739 * 179.97438 * 13 12 11 15 15 C 1.33244 * 109.82874 * 359.97438 * 14 13 12 16 16 C 1.50700 * 125.52638 * 179.97438 * 15 14 13 17 17 N 1.46900 * 109.46975 * 90.02616 * 16 15 14 18 18 N 1.30712 * 108.94503 * 359.75908 * 15 14 13 19 19 H 0.96996 * 120.00505 * 359.97438 * 1 2 3 20 20 H 1.09001 * 109.46665 * 60.00499 * 9 7 2 21 21 H 1.08993 * 109.47304 * 300.00055 * 9 7 2 22 22 H 1.09001 * 109.46801 * 300.00442 * 10 9 7 23 23 H 1.09001 * 109.46998 * 60.00038 * 10 9 7 24 24 H 1.08996 * 109.46952 * 300.00302 * 11 10 9 25 25 H 1.09001 * 109.46832 * 60.00321 * 11 10 9 26 26 H 1.08000 * 125.96134 * 359.97438 * 13 12 11 27 27 H 1.09005 * 109.47013 * 210.02548 * 16 15 14 28 28 H 1.08995 * 109.47065 * 330.02716 * 16 15 14 29 29 H 1.00901 * 110.99770 * 179.97438 * 17 16 15 30 30 H 1.00901 * 111.00267 * 303.95387 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6966 -1.2125 5 1 1.2840 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 6 1.4805 -4.9871 -0.0012 12 7 2.4325 -6.1005 -0.0018 13 6 2.4869 -7.1145 0.8792 14 7 3.4750 -7.8995 0.5341 15 6 4.0716 -7.4220 -0.5575 16 6 5.2507 -8.0487 -1.2561 17 7 4.7712 -8.9894 -2.2776 18 7 3.4654 -6.3244 -0.9266 19 1 -0.4851 0.8400 0.0004 20 1 0.6242 -2.5567 -0.8904 21 1 0.6248 -2.5571 0.8896 22 1 2.8721 -3.6042 -0.8905 23 1 2.8721 -3.6043 0.8895 24 1 0.8535 -5.0450 0.8885 25 1 0.8542 -5.0446 -0.8914 26 1 1.8297 -7.2563 1.7244 27 1 5.8476 -7.2700 -1.7309 28 1 5.8621 -8.5828 -0.5289 29 1 5.5436 -9.4228 -2.7609 30 1 4.1623 -9.6842 -1.8720 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000162980392.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:36 Heat of formation + Delta-G solvation = 49.155376 kcal Electronic energy + Delta-G solvation = -13108.669854 eV Core-core repulsion = 10746.259600 eV Total energy + Delta-G solvation = -2362.410253 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.118 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -43.02576 -37.11837 -35.81681 -34.66375 -32.58550 -32.04259 -28.85843 -26.72113 -25.07052 -22.96996 -22.25146 -21.20935 -18.68718 -17.77508 -17.25181 -16.54762 -16.48491 -16.08661 -15.71816 -15.12630 -14.57681 -14.29310 -14.01123 -13.56493 -13.19353 -13.01474 -12.80276 -12.62302 -12.44514 -11.74213 -11.59112 -11.33483 -10.98514 -10.75953 -10.56986 -10.49298 -9.70556 -8.23042 -6.33285 0.71645 1.38854 1.41173 1.42166 1.49661 1.87873 2.39484 3.10816 3.19448 3.49912 3.82401 3.94067 4.08389 4.14962 4.40285 4.50898 4.62190 4.82500 4.87001 5.08062 5.28326 5.45506 5.47251 5.66315 5.80217 5.93619 6.07974 6.22169 6.55919 6.81200 7.13036 7.35723 8.88138 Molecular weight = 210.12amu Principal moments of inertia in cm(-1) A = 0.055904 B = 0.005343 C = 0.005071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 500.737269 B = 5239.497341 C = 5519.882407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.007 3.993 3 Si 0.960 3.040 4 H -0.271 1.271 5 H -0.279 1.279 6 H -0.268 1.268 7 C -0.548 4.548 8 H 0.051 0.949 9 C 0.029 3.971 10 C -0.101 4.101 11 C 0.134 3.866 12 N -0.378 5.378 13 C 0.256 3.744 14 N -0.569 5.569 15 C 0.204 3.796 16 C 0.162 3.838 17 N -0.849 5.849 18 N -0.340 5.340 19 H 0.265 0.735 20 H 0.000 1.000 21 H 0.011 0.989 22 H 0.042 0.958 23 H 0.049 0.951 24 H 0.134 0.866 25 H 0.086 0.914 26 H 0.263 0.737 27 H 0.093 0.907 28 H 0.072 0.928 29 H 0.364 0.636 30 H 0.348 0.652 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.901 -15.503 1.244 16.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.192 4.192 3 Si 0.785 3.215 4 H -0.197 1.197 5 H -0.204 1.204 6 H -0.193 1.193 7 C -0.586 4.586 8 H 0.070 0.930 9 C -0.008 4.008 10 C -0.140 4.140 11 C 0.013 3.987 12 N -0.167 5.167 13 C -0.039 4.039 14 N -0.298 5.298 15 C -0.080 4.080 16 C 0.029 3.971 17 N -0.384 5.384 18 N -0.169 5.169 19 H 0.074 0.926 20 H 0.019 0.981 21 H 0.029 0.971 22 H 0.061 0.939 23 H 0.068 0.932 24 H 0.152 0.848 25 H 0.104 0.896 26 H 0.278 0.722 27 H 0.111 0.889 28 H 0.090 0.910 29 H 0.180 0.820 30 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 5.656 -14.548 0.451 15.615 hybrid contribution 0.399 0.509 0.640 0.909 sum 6.055 -14.039 1.091 15.328 Atomic orbital electron populations 1.70041 1.07474 1.27958 1.51262 1.25857 0.95769 1.02975 0.94597 0.85581 0.78411 0.78540 0.79015 1.19656 1.20446 1.19290 1.21582 0.93264 0.92621 1.51160 0.93047 1.18924 0.94040 0.91852 0.96022 1.21610 0.98567 0.93097 1.00685 1.22096 0.88718 0.82203 1.05656 1.50751 1.24580 1.21249 1.20140 1.26922 0.96561 0.84198 0.96234 1.70370 1.11265 1.32016 1.16124 1.24637 0.98954 0.91526 0.92842 1.19907 0.88707 0.95820 0.92656 1.58501 1.25004 1.23983 1.30890 1.78007 1.03255 1.20513 1.15150 0.92588 0.98148 0.97082 0.93874 0.93181 0.84786 0.89564 0.72159 0.88880 0.91020 0.81979 0.83958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.96 13.29 21.45 0.28 -54.68 16 2 C 0.01 0.37 5.46 84.65 0.46 0.83 16 3 Si 0.96 44.07 29.54 68.60 2.03 46.10 16 4 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 5 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 6 H -0.27 -11.85 7.11 99.48 0.71 -11.15 16 7 C -0.55 -31.03 9.11 25.60 0.23 -30.80 16 8 H 0.05 2.87 7.74 -2.91 -0.02 2.85 16 9 C 0.03 1.47 4.97 29.85 0.15 1.62 16 10 C -0.10 -4.10 5.37 30.60 0.16 -3.94 16 11 C 0.13 4.11 6.55 86.38 0.57 4.68 16 12 N -0.38 -11.72 3.69 -352.07 -1.30 -13.02 16 13 C 0.26 6.43 12.63 180.36 2.28 8.71 16 14 N -0.57 -16.35 11.19 -191.80 -2.15 -18.50 16 15 C 0.20 6.22 7.65 138.63 1.06 7.29 16 16 C 0.16 3.68 7.41 85.56 0.63 4.32 16 17 N -0.85 -16.79 9.61 -190.01 -1.83 -18.61 16 18 N -0.34 -12.13 12.57 -51.33 -0.65 -12.77 16 19 H 0.27 14.80 8.31 -92.71 -0.77 14.03 16 20 H 0.00 0.01 8.14 -2.39 -0.02 -0.01 16 21 H 0.01 0.56 8.14 -2.39 -0.02 0.54 16 22 H 0.04 1.91 8.14 -2.39 -0.02 1.89 16 23 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 24 H 0.13 3.15 8.09 -2.39 -0.02 3.13 16 25 H 0.09 2.67 8.14 -2.39 -0.02 2.65 16 26 H 0.26 3.56 8.06 -2.91 -0.02 3.54 16 27 H 0.09 2.09 8.14 -2.38 -0.02 2.07 16 28 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 29 H 0.36 4.87 9.08 -89.69 -0.81 4.06 16 30 H 0.35 6.58 8.99 -89.69 -0.81 5.77 16 Total: -1.00 -70.70 267.61 1.47 -69.23 By element: Atomic # 1 Polarization: 10.01 SS G_CDS: -0.47 Total: 9.54 kcal Atomic # 6 Polarization: -12.84 SS G_CDS: 5.55 Total: -7.29 kcal Atomic # 7 Polarization: -111.95 SS G_CDS: -5.63 Total: -117.58 kcal Atomic # 14 Polarization: 44.07 SS G_CDS: 2.03 Total: 46.10 kcal Total: -70.70 1.47 -69.23 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000162980392.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.386 kcal (2) G-P(sol) polarization free energy of solvation -70.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.231 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds