Wall clock time and date at job start Mon Mar 30 2020 02:19:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 N 1.46504 * 109.46883 * 180.02562 * 3 2 1 5 5 N 1.40079 * 126.03887 * 90.02721 * 4 3 2 6 6 C 1.30834 * 108.20741 * 179.97438 * 5 4 3 7 7 C 1.39868 * 108.19965 * 359.97438 * 6 5 4 8 8 C 1.34948 * 126.03412 * 269.71191 * 4 3 2 9 9 C 1.50701 * 126.12765 * 359.97438 * 8 4 3 10 10 H 1.09004 * 109.46951 * 25.00338 * 9 8 4 11 11 O 1.42895 * 109.46713 * 145.00187 * 9 8 4 12 12 C 1.50698 * 109.47193 * 265.00367 * 9 8 4 13 13 H 1.08000 * 120.00181 * 359.97438 * 12 9 8 14 14 C 1.37878 * 119.99676 * 180.02562 * 12 9 8 15 15 N 1.31513 * 120.00255 * 359.97438 * 14 12 9 16 16 Si 1.86807 * 119.99806 * 179.97438 * 14 12 9 17 17 H 1.48501 * 109.46991 * 359.97438 * 16 14 12 18 18 H 1.48503 * 109.46754 * 119.99778 * 16 14 12 19 19 H 1.48496 * 109.46995 * 239.99672 * 16 14 12 20 20 H 1.08996 * 109.46952 * 300.00302 * 1 2 3 21 21 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 22 22 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.47502 * 240.00157 * 2 1 3 24 24 H 1.09001 * 109.47289 * 119.99953 * 2 1 3 25 25 H 1.09001 * 109.47002 * 299.99574 * 3 2 1 26 26 H 1.08993 * 109.46955 * 60.00011 * 3 2 1 27 27 H 1.07999 * 125.90193 * 179.97438 * 6 5 4 28 28 H 1.08009 * 126.03851 * 180.02562 * 7 6 5 29 29 H 0.96702 * 114.00671 * 60.00506 * 11 9 8 30 30 H 0.97003 * 119.99967 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5050 1.4425 -0.0006 5 7 4.3287 1.4432 -1.1337 6 6 5.5743 1.4434 -0.7336 7 6 5.5839 1.4435 0.6651 8 6 4.2994 1.4478 1.0903 9 6 3.8383 1.4553 2.5251 10 1 2.8402 1.0217 2.5882 11 8 4.7430 0.6863 3.3200 12 6 3.8030 2.8734 3.0339 13 1 4.0865 3.6877 2.3836 14 6 3.4098 3.1311 4.3300 15 7 3.0651 2.1394 5.1221 16 14 3.3667 4.8888 4.9610 17 1 3.7983 5.8129 3.8817 18 1 1.9840 5.2298 5.3819 19 1 4.2840 5.0208 6.1213 20 1 -0.3633 0.5139 0.8899 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 1.8934 -0.5138 -0.8900 24 1 1.8933 -0.5138 0.8900 25 1 1.6767 1.9564 -0.8900 26 1 1.6767 1.9563 0.8899 27 1 6.4448 1.4435 -1.3728 28 1 6.4616 1.4441 1.2945 29 1 5.6523 1.0155 3.3109 30 1 2.7881 2.3208 6.0339 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000165002117.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:39 Heat of formation + Delta-G solvation = 11.333343 kcal Electronic energy + Delta-G solvation = -14017.673387 eV Core-core repulsion = 11621.330296 eV Total energy + Delta-G solvation = -2396.343091 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.111 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.46926 -35.65040 -34.96320 -32.28713 -30.98688 -29.59036 -26.63880 -25.76844 -23.02826 -21.66614 -20.23847 -18.91580 -17.14958 -16.38961 -14.98843 -14.69892 -14.39982 -14.27833 -13.54008 -13.28341 -13.03187 -12.55096 -12.29463 -11.82276 -11.59080 -11.29120 -11.14574 -11.03570 -11.00894 -10.55962 -10.27434 -10.09397 -9.42085 -8.83449 -8.59154 -8.33739 -7.68376 -6.15407 -4.35368 2.68922 3.19098 3.21863 3.28969 3.33885 3.61757 4.30645 5.03057 5.10912 5.14582 5.35878 5.45256 5.68270 5.78615 5.83528 5.91626 6.10045 6.16384 6.18844 6.36273 6.44731 6.59831 6.72613 7.38997 7.47660 7.70130 7.78577 7.97255 8.47449 8.68091 9.18604 9.41125 10.88013 Molecular weight = 210.11amu Principal moments of inertia in cm(-1) A = 0.026525 B = 0.011128 C = 0.009388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1055.336782 B = 2515.681052 C = 2981.761092 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.140 4.140 3 C 0.134 3.866 4 N -0.369 5.369 5 N -0.327 5.327 6 C 0.039 3.961 7 C -0.296 4.296 8 C 0.108 3.892 9 C 0.284 3.716 10 H 0.068 0.932 11 O -0.553 6.553 12 C -0.565 4.565 13 H 0.060 0.940 14 C 0.082 3.918 15 N -0.856 5.856 16 Si 0.894 3.106 17 H -0.271 1.271 18 H -0.281 1.281 19 H -0.280 1.280 20 H 0.061 0.939 21 H 0.054 0.946 22 H 0.057 0.943 23 H 0.065 0.935 24 H 0.071 0.929 25 H 0.084 0.916 26 H 0.100 0.900 27 H 0.172 0.828 28 H 0.138 0.862 29 H 0.352 0.648 30 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.413 -1.638 -7.020 7.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.178 4.178 3 C 0.012 3.988 4 N -0.152 5.152 5 N -0.149 5.149 6 C -0.146 4.146 7 C -0.325 4.325 8 C -0.021 4.021 9 C 0.225 3.775 10 H 0.085 0.915 11 O -0.354 6.354 12 C -0.603 4.603 13 H 0.078 0.922 14 C -0.125 4.125 15 N -0.492 5.492 16 Si 0.721 3.279 17 H -0.196 1.196 18 H -0.207 1.207 19 H -0.206 1.206 20 H 0.080 0.920 21 H 0.073 0.927 22 H 0.076 0.924 23 H 0.083 0.917 24 H 0.090 0.910 25 H 0.102 0.898 26 H 0.119 0.881 27 H 0.189 0.811 28 H 0.155 0.845 29 H 0.197 0.803 30 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -2.953 -2.056 -7.728 8.524 hybrid contribution 1.086 1.346 0.913 1.956 sum -1.867 -0.710 -6.814 7.101 Atomic orbital electron populations 1.21680 0.94743 1.01971 1.02111 1.21913 0.96307 0.96525 1.03087 1.21682 0.75032 0.97824 1.04251 1.48451 1.05833 1.57526 1.03353 1.77114 1.01718 1.26931 1.09104 1.23611 0.94974 1.00848 0.95201 1.21021 0.96705 1.20413 0.94325 1.23030 0.91190 0.94692 0.93151 1.18092 0.89889 0.92246 0.77311 0.91463 1.86596 1.21159 1.56546 1.71127 1.21484 1.49044 0.91809 0.97998 0.92191 1.25029 0.93660 0.97250 0.96587 1.70075 1.41467 1.30752 1.06860 0.86515 0.77868 0.84496 0.79005 1.19572 1.20726 1.20628 0.92022 0.92689 0.92379 0.91653 0.91035 0.89757 0.88150 0.81127 0.84459 0.80272 0.92695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.79 9.91 37.16 0.37 -1.42 16 2 C -0.14 -2.13 6.26 -26.73 -0.17 -2.30 16 3 C 0.13 2.32 6.04 -4.04 -0.02 2.30 16 4 N -0.37 -7.65 3.61 -57.14 -0.21 -7.86 16 5 N -0.33 -6.68 12.57 30.62 0.39 -6.30 16 6 C 0.04 0.74 12.03 -17.37 -0.21 0.53 16 7 C -0.30 -6.07 10.17 -40.01 -0.41 -6.48 16 8 C 0.11 2.42 5.93 -82.26 -0.49 1.93 16 9 C 0.28 7.09 2.91 -29.04 -0.08 7.01 16 10 H 0.07 1.78 7.49 -51.93 -0.39 1.39 16 11 O -0.55 -13.98 12.61 -35.23 -0.44 -14.43 16 12 C -0.57 -15.08 8.75 -34.44 -0.30 -15.39 16 13 H 0.06 1.63 7.74 -52.49 -0.41 1.23 16 14 C 0.08 2.20 5.40 -17.82 -0.10 2.10 16 15 N -0.86 -24.13 12.84 55.43 0.71 -23.42 16 16 Si 0.89 20.57 29.54 -169.99 -5.02 15.55 16 17 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 18 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 19 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 20 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 21 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 22 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 23 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 24 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 25 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 26 H 0.10 1.81 7.53 -51.93 -0.39 1.42 16 27 H 0.17 2.48 8.06 -52.49 -0.42 2.06 16 28 H 0.14 2.57 7.57 -52.48 -0.40 2.17 16 29 H 0.35 7.88 8.19 45.56 0.37 8.25 16 30 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 LS Contribution 263.63 15.07 3.97 3.97 Total: -1.00 -30.57 263.63 -5.32 -35.88 By element: Atomic # 1 Polarization: 11.62 SS G_CDS: -3.30 Total: 8.32 kcal Atomic # 6 Polarization: -10.31 SS G_CDS: -1.41 Total: -11.72 kcal Atomic # 7 Polarization: -38.46 SS G_CDS: 0.89 Total: -37.57 kcal Atomic # 8 Polarization: -13.98 SS G_CDS: -0.44 Total: -14.43 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.02 Total: 15.55 kcal Total LS contribution 3.97 Total: 3.97 kcal Total: -30.57 -5.32 -35.88 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000165002117.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.216 kcal (2) G-P(sol) polarization free energy of solvation -30.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.883 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds