Wall clock time and date at job start Mon Mar 30 2020 02:19:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 N 1.46504 * 109.46883 * 180.02562 * 3 2 1 5 5 N 1.40079 * 126.03887 * 90.02721 * 4 3 2 6 6 C 1.30834 * 108.20741 * 179.97438 * 5 4 3 7 7 C 1.39868 * 108.19965 * 359.97438 * 6 5 4 8 8 C 1.34948 * 126.03412 * 269.71191 * 4 3 2 9 9 C 1.50701 * 126.12765 * 359.97438 * 8 4 3 10 10 H 1.09004 * 109.46951 * 25.00338 * 9 8 4 11 11 O 1.42895 * 109.46713 * 145.00187 * 9 8 4 12 12 C 1.50698 * 109.47193 * 265.00367 * 9 8 4 13 13 H 1.08000 * 120.00181 * 359.97438 * 12 9 8 14 14 C 1.37878 * 119.99676 * 180.02562 * 12 9 8 15 15 N 1.31513 * 120.00255 * 359.97438 * 14 12 9 16 16 Si 1.86807 * 119.99806 * 179.97438 * 14 12 9 17 17 H 1.48501 * 109.46991 * 359.97438 * 16 14 12 18 18 H 1.48503 * 109.46754 * 119.99778 * 16 14 12 19 19 H 1.48496 * 109.46995 * 239.99672 * 16 14 12 20 20 H 1.08996 * 109.46952 * 300.00302 * 1 2 3 21 21 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 22 22 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.47502 * 240.00157 * 2 1 3 24 24 H 1.09001 * 109.47289 * 119.99953 * 2 1 3 25 25 H 1.09001 * 109.47002 * 299.99574 * 3 2 1 26 26 H 1.08993 * 109.46955 * 60.00011 * 3 2 1 27 27 H 1.07999 * 125.90193 * 179.97438 * 6 5 4 28 28 H 1.08009 * 126.03851 * 180.02562 * 7 6 5 29 29 H 0.96702 * 114.00671 * 60.00506 * 11 9 8 30 30 H 0.97003 * 119.99967 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5050 1.4425 -0.0006 5 7 4.3287 1.4432 -1.1337 6 6 5.5743 1.4434 -0.7336 7 6 5.5839 1.4435 0.6651 8 6 4.2994 1.4478 1.0903 9 6 3.8383 1.4553 2.5251 10 1 2.8402 1.0217 2.5882 11 8 4.7430 0.6863 3.3200 12 6 3.8030 2.8734 3.0339 13 1 4.0865 3.6877 2.3836 14 6 3.4098 3.1311 4.3300 15 7 3.0651 2.1394 5.1221 16 14 3.3667 4.8888 4.9610 17 1 3.7983 5.8129 3.8817 18 1 1.9840 5.2298 5.3819 19 1 4.2840 5.0208 6.1213 20 1 -0.3633 0.5139 0.8899 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 1.8934 -0.5138 -0.8900 24 1 1.8933 -0.5138 0.8900 25 1 1.6767 1.9564 -0.8900 26 1 1.6767 1.9563 0.8899 27 1 6.4448 1.4435 -1.3728 28 1 6.4616 1.4441 1.2945 29 1 5.6523 1.0155 3.3109 30 1 2.7881 2.3208 6.0339 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000165002117.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:39 Heat of formation + Delta-G solvation = -9.959343 kcal Electronic energy + Delta-G solvation = -14018.596707 eV Core-core repulsion = 11621.330296 eV Total energy + Delta-G solvation = -2397.266411 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.111 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -42.05606 -37.61258 -36.27838 -34.35764 -32.42886 -31.26991 -28.57953 -27.09826 -24.96674 -22.94163 -21.75811 -20.57108 -19.17775 -18.06996 -16.75419 -16.28081 -16.12217 -15.81647 -15.10556 -15.04445 -14.51462 -14.03412 -13.95100 -13.29671 -13.05262 -12.98564 -12.86949 -12.80698 -12.30226 -12.12987 -11.85557 -11.69713 -11.33756 -10.83065 -10.53034 -10.01281 -9.32159 -8.20492 -6.48271 1.06604 1.38531 1.41722 1.53084 1.72056 2.04355 2.38008 3.05123 3.66962 3.87738 4.01357 4.12397 4.22579 4.26062 4.47245 4.52134 4.70181 4.81788 4.94535 5.03237 5.07956 5.14547 5.31596 5.56137 5.65662 5.88243 5.92101 6.22580 6.59992 6.90080 7.22998 7.38862 8.83129 Molecular weight = 210.11amu Principal moments of inertia in cm(-1) A = 0.026525 B = 0.011128 C = 0.009388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1055.336782 B = 2515.681052 C = 2981.761092 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.130 4.130 3 C 0.127 3.873 4 N -0.375 5.375 5 N -0.337 5.337 6 C 0.046 3.954 7 C -0.300 4.300 8 C 0.079 3.921 9 C 0.292 3.708 10 H 0.041 0.959 11 O -0.567 6.567 12 C -0.574 4.574 13 H 0.050 0.950 14 C 0.037 3.963 15 N -0.891 5.891 16 Si 0.961 3.039 17 H -0.270 1.270 18 H -0.274 1.274 19 H -0.275 1.275 20 H 0.056 0.944 21 H 0.074 0.926 22 H 0.072 0.928 23 H 0.067 0.933 24 H 0.044 0.956 25 H 0.105 0.895 26 H 0.085 0.915 27 H 0.216 0.784 28 H 0.152 0.848 29 H 0.363 0.637 30 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.168 -0.943 -8.012 8.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.169 4.169 3 C 0.006 3.994 4 N -0.158 5.158 5 N -0.158 5.158 6 C -0.139 4.139 7 C -0.329 4.329 8 C -0.050 4.050 9 C 0.233 3.767 10 H 0.059 0.941 11 O -0.370 6.370 12 C -0.613 4.613 13 H 0.069 0.931 14 C -0.167 4.167 15 N -0.527 5.527 16 Si 0.786 3.214 17 H -0.194 1.194 18 H -0.200 1.200 19 H -0.200 1.200 20 H 0.075 0.925 21 H 0.093 0.907 22 H 0.091 0.909 23 H 0.086 0.914 24 H 0.063 0.937 25 H 0.123 0.877 26 H 0.103 0.897 27 H 0.232 0.768 28 H 0.169 0.831 29 H 0.210 0.790 30 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -2.715 -1.362 -8.729 9.242 hybrid contribution 1.045 1.093 1.175 1.915 sum -1.671 -0.269 -7.554 7.741 Atomic orbital electron populations 1.21659 0.92144 1.03214 1.02843 1.21826 0.98458 0.94795 1.01781 1.21905 0.73805 0.99254 1.04439 1.48726 1.06829 1.57339 1.02942 1.77089 1.02497 1.27191 1.09044 1.24271 0.95695 0.99057 0.94867 1.21348 0.96391 1.19470 0.95642 1.22715 0.92539 0.97236 0.92461 1.17724 0.88851 0.91106 0.79041 0.94117 1.86535 1.22012 1.56835 1.71666 1.21642 1.49018 0.92386 0.98207 0.93127 1.25794 0.93080 1.01154 0.96691 1.70180 1.42371 1.32879 1.07280 0.85480 0.78131 0.79527 0.78296 1.19443 1.19974 1.20049 0.92519 0.90702 0.90901 0.91447 0.93681 0.87676 0.89709 0.76766 0.83067 0.79026 0.92437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.25 9.91 71.98 0.71 -2.53 16 2 C -0.13 -3.95 6.26 30.60 0.19 -3.76 16 3 C 0.13 4.39 6.04 86.38 0.52 4.91 16 4 N -0.38 -15.45 3.61 -334.69 -1.21 -16.66 16 5 N -0.34 -13.16 12.57 -57.03 -0.72 -13.88 16 6 C 0.05 1.62 12.03 85.24 1.02 2.65 16 7 C -0.30 -11.92 10.17 21.99 0.22 -11.70 16 8 C 0.08 3.56 5.93 41.40 0.25 3.80 16 9 C 0.29 14.94 2.91 29.10 0.08 15.02 16 10 H 0.04 2.27 7.49 -2.38 -0.02 2.25 16 11 O -0.57 -29.22 12.61 -148.98 -1.88 -31.10 16 12 C -0.57 -31.03 8.75 25.60 0.22 -30.80 16 13 H 0.05 2.78 7.74 -2.91 -0.02 2.75 16 14 C 0.04 1.98 5.40 84.66 0.46 2.44 16 15 N -0.89 -50.77 12.84 21.45 0.28 -50.49 16 16 Si 0.96 42.14 29.54 68.60 2.03 44.17 16 17 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 18 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 19 H -0.28 -11.76 7.11 99.48 0.71 -11.06 16 20 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 21 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 22 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 23 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 24 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 25 H 0.11 3.14 8.14 -2.39 -0.02 3.12 16 26 H 0.08 3.16 7.53 -2.39 -0.02 3.15 16 27 H 0.22 5.35 8.06 -2.91 -0.02 5.32 16 28 H 0.15 5.42 7.57 -2.91 -0.02 5.40 16 29 H 0.36 16.41 8.19 -74.06 -0.61 15.80 16 30 H 0.27 14.25 8.31 -92.71 -0.77 13.48 16 Total: -1.00 -64.57 263.63 2.71 -61.86 By element: Atomic # 1 Polarization: 25.54 SS G_CDS: 0.52 Total: 26.07 kcal Atomic # 6 Polarization: -23.65 SS G_CDS: 3.69 Total: -19.97 kcal Atomic # 7 Polarization: -79.38 SS G_CDS: -1.65 Total: -81.03 kcal Atomic # 8 Polarization: -29.22 SS G_CDS: -1.88 Total: -31.10 kcal Atomic # 14 Polarization: 42.14 SS G_CDS: 2.03 Total: 44.17 kcal Total: -64.57 2.71 -61.86 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000165002117.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.899 kcal (2) G-P(sol) polarization free energy of solvation -64.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.858 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds