Wall clock time and date at job start Mon Mar 30 2020 02:51:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46907 * 111.00178 * 2 1 4 4 C 1.46895 * 111.00176 * 123.94751 * 2 1 3 5 5 C 1.53006 * 109.46787 * 66.04865 * 4 2 1 6 6 C 1.50698 * 109.47093 * 180.02562 * 5 4 2 7 7 N 1.31315 * 126.08149 * 304.97783 * 6 5 4 8 8 N 1.28566 * 110.20885 * 180.02562 * 7 6 5 9 9 C 1.33021 * 109.35443 * 359.97438 * 8 7 6 10 10 C 1.40131 * 126.65394 * 179.97438 * 9 8 7 11 11 H 1.08002 * 119.99712 * 180.02562 * 10 9 8 12 12 C 1.40239 * 120.00029 * 0.30613 * 10 9 8 13 13 N 1.30694 * 119.99808 * 359.72014 * 12 10 9 14 14 Si 1.86796 * 120.00295 * 179.72144 * 12 10 9 15 15 H 1.48503 * 109.47080 * 89.99423 * 14 12 10 16 16 H 1.48499 * 109.47268 * 210.00074 * 14 12 10 17 17 H 1.48502 * 109.46679 * 329.99982 * 14 12 10 18 18 N 1.35301 * 126.07890 * 125.26399 * 6 5 4 19 19 H 0.97003 * 127.04478 * 0.02562 * 18 6 5 20 20 H 1.08996 * 109.47470 * 296.05325 * 1 2 3 21 21 H 1.09004 * 109.47051 * 56.04898 * 1 2 3 22 22 H 1.08994 * 109.47123 * 176.04499 * 1 2 3 23 23 H 1.08998 * 109.47365 * 183.95624 * 3 2 1 24 24 H 1.09006 * 109.46444 * 303.95254 * 3 2 1 25 25 H 1.08999 * 109.47184 * 63.94833 * 3 2 1 26 26 H 1.09001 * 109.47554 * 306.05311 * 4 2 1 27 27 H 1.08997 * 109.47616 * 186.04434 * 4 2 1 28 28 H 1.08994 * 109.47336 * 60.00031 * 5 4 2 29 29 H 1.09007 * 109.46809 * 300.00021 * 5 4 2 30 30 H 0.96995 * 119.99820 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.9954 -0.7658 1.1376 5 6 1.6315 -2.2425 0.9704 6 6 2.1710 -3.0281 2.1378 7 7 3.4205 -3.0545 2.5409 8 7 3.5410 -3.8245 3.5634 9 6 2.3531 -4.3378 3.8713 10 6 2.0706 -5.2222 4.9209 11 1 1.0609 -5.5740 5.0735 12 6 3.0977 -5.6459 5.7766 13 7 4.3194 -5.2202 5.5918 14 14 2.7197 -6.8187 7.1804 15 1 2.8717 -8.2191 6.7101 16 1 3.6604 -6.5682 8.3018 17 1 1.3262 -6.6013 7.6454 18 7 1.4551 -3.8360 2.9536 19 1 0.5045 -4.0226 2.9038 20 1 -0.3634 0.4513 0.9232 21 1 -0.3633 0.5740 -0.8525 22 1 -0.3633 -1.0252 -0.0709 23 1 3.0828 1.3433 -0.0709 24 1 1.5898 1.9163 -0.8525 25 1 1.7044 1.8724 0.9232 26 1 1.5611 -0.3871 2.0628 27 1 3.0797 -0.6610 1.1757 28 1 2.0658 -2.6213 0.0453 29 1 0.5471 -2.3474 0.9324 30 1 5.0299 -5.5135 6.1834 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000167979027.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:54 Heat of formation + Delta-G solvation = 62.393802 kcal Electronic energy + Delta-G solvation = -13474.180381 eV Core-core repulsion = 11112.344189 eV Total energy + Delta-G solvation = -2361.836192 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.118 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.67572 -37.41924 -33.64929 -32.13353 -31.43417 -28.36974 -27.52794 -25.56686 -23.92245 -21.08022 -20.77896 -19.59255 -17.20416 -16.12622 -15.31965 -15.26183 -14.71206 -14.55304 -13.90580 -13.33151 -12.93820 -12.60408 -12.32091 -11.70174 -11.61631 -11.43443 -11.24193 -11.15957 -10.97558 -10.58576 -10.31551 -9.55374 -9.38614 -8.95297 -8.28353 -8.24611 -7.51833 -6.55702 -4.52144 2.99040 3.10365 3.13708 3.55077 3.92244 4.05831 4.55491 4.60037 5.20011 5.22772 5.42746 5.43290 5.48468 5.61521 5.75735 5.82367 5.84841 5.91645 6.01315 6.37862 6.46918 6.98745 7.12068 7.13407 7.21731 7.35686 7.58721 8.27274 8.30351 8.82023 9.10053 10.37756 10.85063 Molecular weight = 210.12amu Principal moments of inertia in cm(-1) A = 0.079779 B = 0.006114 C = 0.005883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 350.883368 B = 4578.223686 C = 4758.288542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.550 5.550 3 C 0.026 3.974 4 C 0.066 3.934 5 C -0.001 4.001 6 C 0.061 3.939 7 N -0.297 5.297 8 N -0.340 5.340 9 C 0.334 3.666 10 C -0.458 4.458 11 H 0.081 0.919 12 C 0.080 3.920 13 N -0.740 5.740 14 Si 0.918 3.082 15 H -0.270 1.270 16 H -0.276 1.276 17 H -0.264 1.264 18 N -0.636 5.636 19 H 0.401 0.599 20 H 0.023 0.977 21 H 0.063 0.937 22 H 0.070 0.930 23 H 0.069 0.931 24 H 0.064 0.936 25 H 0.023 0.977 26 H 0.031 0.969 27 H 0.087 0.913 28 H 0.079 0.921 29 H 0.059 0.941 30 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.616 6.053 -5.587 11.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 N -0.274 5.274 3 C -0.123 4.123 4 C -0.063 4.063 5 C -0.041 4.041 6 C -0.206 4.206 7 N -0.140 5.140 8 N -0.187 5.187 9 C 0.088 3.912 10 C -0.498 4.498 11 H 0.099 0.901 12 C -0.145 4.145 13 N -0.365 5.365 14 Si 0.742 3.258 15 H -0.195 1.195 16 H -0.201 1.201 17 H -0.188 1.188 18 N -0.255 5.255 19 H 0.236 0.764 20 H 0.041 0.959 21 H 0.082 0.918 22 H 0.089 0.911 23 H 0.088 0.912 24 H 0.083 0.917 25 H 0.041 0.959 26 H 0.050 0.950 27 H 0.105 0.895 28 H 0.097 0.903 29 H 0.078 0.922 30 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -5.521 6.202 -5.921 10.198 hybrid contribution -2.403 -0.552 1.382 2.827 sum -7.924 5.650 -4.539 10.738 Atomic orbital electron populations 1.22432 0.88027 1.02296 1.00018 1.62001 1.07602 1.13642 1.44117 1.22353 1.01029 0.88869 1.00001 1.22099 1.01278 0.92833 0.90066 1.19449 0.98685 0.92171 0.93844 1.23523 0.91266 1.04787 1.00987 1.73984 1.14266 1.16465 1.09293 1.75596 1.17697 1.14887 1.10545 1.21608 0.84496 0.94849 0.90237 1.18135 0.96364 1.25316 1.10015 0.90095 1.25762 0.94315 0.96212 0.98235 1.69962 1.00428 1.33397 1.32682 0.86167 0.79265 0.80306 0.80012 1.19473 1.20087 1.18812 1.43896 1.10992 1.42179 1.28438 0.76406 0.95872 0.91785 0.91123 0.91169 0.91724 0.95874 0.95034 0.89483 0.90306 0.92242 0.91139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.24 9.32 60.06 0.56 0.80 16 2 N -0.55 -7.58 5.02 -251.26 -1.26 -8.84 16 3 C 0.03 0.30 9.57 60.07 0.57 0.88 16 4 C 0.07 1.08 4.92 -3.82 -0.02 1.06 16 5 C 0.00 -0.02 5.77 -27.88 -0.16 -0.18 16 6 C 0.06 1.42 7.55 -154.50 -1.17 0.25 16 7 N -0.30 -8.22 12.19 32.88 0.40 -7.82 16 8 N -0.34 -10.38 10.53 31.22 0.33 -10.05 16 9 C 0.33 9.37 7.73 -155.22 -1.20 8.17 16 10 C -0.46 -12.33 9.46 -38.12 -0.36 -12.69 16 11 H 0.08 1.97 7.85 -52.49 -0.41 1.56 16 12 C 0.08 2.08 5.50 -17.28 -0.10 1.98 16 13 N -0.74 -20.80 11.95 55.56 0.66 -20.13 16 14 Si 0.92 18.87 29.56 -169.99 -5.03 13.84 16 15 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 16 H -0.28 -5.56 7.11 56.52 0.40 -5.16 16 17 H -0.26 -5.26 7.11 56.52 0.40 -4.85 16 18 N -0.64 -14.89 6.29 -9.37 -0.06 -14.95 16 19 H 0.40 7.70 8.96 -40.82 -0.37 7.34 16 20 H 0.02 0.26 8.14 -51.93 -0.42 -0.16 16 21 H 0.06 0.62 8.12 -51.93 -0.42 0.20 16 22 H 0.07 0.79 6.47 -51.93 -0.34 0.46 16 23 H 0.07 0.81 8.12 -51.93 -0.42 0.39 16 24 H 0.06 0.63 8.12 -51.93 -0.42 0.21 16 25 H 0.02 0.26 8.14 -51.93 -0.42 -0.16 16 26 H 0.03 0.54 8.12 -51.93 -0.42 0.12 16 27 H 0.09 1.57 8.06 -51.93 -0.42 1.15 16 28 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 29 H 0.06 0.90 6.55 -51.92 -0.34 0.56 16 30 H 0.28 7.04 8.29 -40.82 -0.34 6.70 16 LS Contribution 259.78 15.07 3.91 3.91 Total: -1.00 -32.65 259.78 -6.87 -39.51 By element: Atomic # 1 Polarization: 8.22 SS G_CDS: -3.96 Total: 4.26 kcal Atomic # 6 Polarization: 2.14 SS G_CDS: -1.87 Total: 0.27 kcal Atomic # 7 Polarization: -61.87 SS G_CDS: 0.07 Total: -61.80 kcal Atomic # 14 Polarization: 18.87 SS G_CDS: -5.03 Total: 13.84 kcal Total LS contribution 3.91 Total: 3.91 kcal Total: -32.65 -6.87 -39.51 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000167979027.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.905 kcal (2) G-P(sol) polarization free energy of solvation -32.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.511 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds