Wall clock time and date at job start Mon Mar 30 2020 02:51:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46907 * 111.00178 * 2 1 4 4 C 1.46895 * 111.00176 * 123.94751 * 2 1 3 5 5 C 1.53006 * 109.46787 * 66.04865 * 4 2 1 6 6 C 1.50698 * 109.47093 * 180.02562 * 5 4 2 7 7 N 1.31315 * 126.08149 * 304.97783 * 6 5 4 8 8 N 1.28566 * 110.20885 * 180.02562 * 7 6 5 9 9 C 1.33021 * 109.35443 * 359.97438 * 8 7 6 10 10 C 1.40131 * 126.65394 * 179.97438 * 9 8 7 11 11 H 1.08002 * 119.99712 * 180.02562 * 10 9 8 12 12 C 1.40239 * 120.00029 * 0.30613 * 10 9 8 13 13 N 1.30694 * 119.99808 * 359.72014 * 12 10 9 14 14 Si 1.86796 * 120.00295 * 179.72144 * 12 10 9 15 15 H 1.48503 * 109.47080 * 89.99423 * 14 12 10 16 16 H 1.48499 * 109.47268 * 210.00074 * 14 12 10 17 17 H 1.48502 * 109.46679 * 329.99982 * 14 12 10 18 18 N 1.35301 * 126.07890 * 125.26399 * 6 5 4 19 19 H 0.97003 * 127.04478 * 0.02562 * 18 6 5 20 20 H 1.08996 * 109.47470 * 296.05325 * 1 2 3 21 21 H 1.09004 * 109.47051 * 56.04898 * 1 2 3 22 22 H 1.08994 * 109.47123 * 176.04499 * 1 2 3 23 23 H 1.08998 * 109.47365 * 183.95624 * 3 2 1 24 24 H 1.09006 * 109.46444 * 303.95254 * 3 2 1 25 25 H 1.08999 * 109.47184 * 63.94833 * 3 2 1 26 26 H 1.09001 * 109.47554 * 306.05311 * 4 2 1 27 27 H 1.08997 * 109.47616 * 186.04434 * 4 2 1 28 28 H 1.08994 * 109.47336 * 60.00031 * 5 4 2 29 29 H 1.09007 * 109.46809 * 300.00021 * 5 4 2 30 30 H 0.96995 * 119.99820 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.9954 -0.7658 1.1376 5 6 1.6315 -2.2425 0.9704 6 6 2.1710 -3.0281 2.1378 7 7 3.4205 -3.0545 2.5409 8 7 3.5410 -3.8245 3.5634 9 6 2.3531 -4.3378 3.8713 10 6 2.0706 -5.2222 4.9209 11 1 1.0609 -5.5740 5.0735 12 6 3.0977 -5.6459 5.7766 13 7 4.3194 -5.2202 5.5918 14 14 2.7197 -6.8187 7.1804 15 1 2.8717 -8.2191 6.7101 16 1 3.6604 -6.5682 8.3018 17 1 1.3262 -6.6013 7.6454 18 7 1.4551 -3.8360 2.9536 19 1 0.5045 -4.0226 2.9038 20 1 -0.3634 0.4513 0.9232 21 1 -0.3633 0.5740 -0.8525 22 1 -0.3633 -1.0252 -0.0709 23 1 3.0828 1.3433 -0.0709 24 1 1.5898 1.9163 -0.8525 25 1 1.7044 1.8724 0.9232 26 1 1.5611 -0.3871 2.0628 27 1 3.0797 -0.6610 1.1757 28 1 2.0658 -2.6213 0.0453 29 1 0.5471 -2.3474 0.9324 30 1 5.0299 -5.5135 6.1834 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000167979027.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:54 Heat of formation + Delta-G solvation = 38.323034 kcal Electronic energy + Delta-G solvation = -13475.224168 eV Core-core repulsion = 11112.344189 eV Total energy + Delta-G solvation = -2362.879979 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.118 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -42.66820 -38.55881 -35.59117 -33.97683 -33.15743 -30.19929 -28.45983 -27.36236 -25.41391 -22.79831 -22.39495 -21.39484 -19.07210 -18.04320 -16.77305 -16.56060 -16.19393 -15.94475 -15.50200 -15.00829 -14.35905 -14.15486 -13.29028 -13.17936 -12.98467 -12.95387 -12.76840 -12.54734 -12.40149 -12.00435 -11.85195 -11.59706 -11.25926 -10.95004 -10.28347 -9.57346 -9.34430 -8.48962 -6.58724 1.31591 1.43398 1.59912 1.74513 2.21391 2.53996 2.63220 3.12547 3.40161 3.92656 4.11395 4.21690 4.34350 4.51494 4.52931 4.68882 4.75193 4.96172 5.00587 5.01504 5.03802 5.09277 5.31847 5.43441 5.60137 6.00409 6.11539 6.27143 6.40216 6.82351 7.22830 8.47790 8.82386 Molecular weight = 210.12amu Principal moments of inertia in cm(-1) A = 0.079779 B = 0.006114 C = 0.005883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 350.883368 B = 4578.223686 C = 4758.288542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.555 5.555 3 C 0.024 3.976 4 C 0.077 3.923 5 C 0.003 3.997 6 C 0.093 3.907 7 N -0.349 5.349 8 N -0.396 5.396 9 C 0.306 3.694 10 C -0.484 4.484 11 H 0.101 0.899 12 C 0.029 3.971 13 N -0.793 5.793 14 Si 1.006 2.994 15 H -0.262 1.262 16 H -0.272 1.272 17 H -0.249 1.249 18 N -0.626 5.626 19 H 0.421 0.579 20 H 0.023 0.977 21 H 0.086 0.914 22 H 0.075 0.925 23 H 0.065 0.935 24 H 0.089 0.911 25 H 0.023 0.977 26 H 0.020 0.980 27 H 0.064 0.936 28 H 0.087 0.913 29 H 0.093 0.907 30 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.809 5.969 -5.915 12.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 N -0.279 5.279 3 C -0.124 4.124 4 C -0.052 4.052 5 C -0.037 4.037 6 C -0.176 4.176 7 N -0.189 5.189 8 N -0.242 5.242 9 C 0.058 3.942 10 C -0.524 4.524 11 H 0.119 0.881 12 C -0.192 4.192 13 N -0.418 5.418 14 Si 0.825 3.175 15 H -0.186 1.186 16 H -0.197 1.197 17 H -0.173 1.173 18 N -0.247 5.247 19 H 0.260 0.740 20 H 0.042 0.958 21 H 0.105 0.895 22 H 0.093 0.907 23 H 0.084 0.916 24 H 0.107 0.893 25 H 0.042 0.958 26 H 0.038 0.962 27 H 0.082 0.918 28 H 0.105 0.895 29 H 0.111 0.889 30 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -7.732 6.140 -6.280 11.701 hybrid contribution -1.792 -0.414 1.329 2.270 sum -9.524 5.726 -4.950 12.166 Atomic orbital electron populations 1.22542 0.86312 1.03105 1.01061 1.61997 1.09175 1.14583 1.42192 1.22436 1.00976 0.87927 1.01094 1.21821 0.99982 0.92548 0.90873 1.19648 1.00564 0.92000 0.91459 1.24541 0.90233 1.02395 1.00445 1.73889 1.16782 1.18130 1.10147 1.75482 1.19741 1.16720 1.12250 1.21996 0.84939 0.95685 0.91531 1.18692 0.97741 1.25641 1.10318 0.88081 1.26963 0.93606 0.97642 1.00939 1.70114 1.01950 1.35333 1.34395 0.84862 0.79606 0.77347 0.75650 1.18625 1.19677 1.17252 1.43853 1.11829 1.41517 1.27454 0.74002 0.95845 0.89534 0.90653 0.91611 0.89268 0.95847 0.96188 0.91772 0.89451 0.88851 0.90689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.35 9.32 127.69 1.19 1.54 16 2 N -0.56 -14.05 5.02 -948.84 -4.76 -18.81 16 3 C 0.02 0.50 9.57 127.69 1.22 1.72 16 4 C 0.08 2.45 4.92 86.31 0.42 2.88 16 5 C 0.00 0.11 5.77 29.85 0.17 0.28 16 6 C 0.09 4.31 7.55 137.81 1.04 5.35 16 7 N -0.35 -19.82 12.19 -49.88 -0.61 -20.43 16 8 N -0.40 -25.00 10.53 -55.14 -0.58 -25.58 16 9 C 0.31 17.47 7.73 133.51 1.03 18.51 16 10 C -0.48 -26.13 9.46 23.22 0.22 -25.91 16 11 H 0.10 4.83 7.85 -2.91 -0.02 4.80 16 12 C 0.03 1.50 5.50 85.35 0.47 1.97 16 13 N -0.79 -45.80 11.95 21.88 0.26 -45.54 16 14 Si 1.01 38.34 29.56 68.60 2.03 40.37 16 15 H -0.26 -9.56 7.11 99.48 0.71 -8.85 16 16 H -0.27 -10.07 7.11 99.48 0.71 -9.37 16 17 H -0.25 -8.81 7.11 99.48 0.71 -8.10 16 18 N -0.63 -28.94 6.29 -183.57 -1.15 -30.10 16 19 H 0.42 15.46 8.96 -92.71 -0.83 14.63 16 20 H 0.02 0.47 8.14 -2.39 -0.02 0.45 16 21 H 0.09 1.35 8.12 -2.38 -0.02 1.33 16 22 H 0.07 1.41 6.47 -2.39 -0.02 1.40 16 23 H 0.07 1.44 8.12 -2.39 -0.02 1.42 16 24 H 0.09 1.47 8.12 -2.38 -0.02 1.45 16 25 H 0.02 0.49 8.14 -2.39 -0.02 0.47 16 26 H 0.02 0.67 8.12 -2.39 -0.02 0.66 16 27 H 0.06 2.33 8.06 -2.39 -0.02 2.32 16 28 H 0.09 2.84 8.14 -2.39 -0.02 2.83 16 29 H 0.09 2.49 6.55 -2.38 -0.02 2.47 16 30 H 0.28 14.77 8.29 -92.71 -0.77 14.00 16 Total: -1.00 -73.10 259.78 1.27 -71.84 By element: Atomic # 1 Polarization: 21.60 SS G_CDS: 0.31 Total: 21.91 kcal Atomic # 6 Polarization: 0.56 SS G_CDS: 5.77 Total: 6.34 kcal Atomic # 7 Polarization: -133.61 SS G_CDS: -6.84 Total: -140.45 kcal Atomic # 14 Polarization: 38.34 SS G_CDS: 2.03 Total: 40.37 kcal Total: -73.10 1.27 -71.84 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000167979027.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.158 kcal (2) G-P(sol) polarization free energy of solvation -73.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.835 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds