Wall clock time and date at job start Mon Mar 30 2020 02:49:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08996 * 109.46877 * 2 1 4 4 C 1.50699 * 109.46728 * 240.00745 * 2 1 3 5 5 H 1.08002 * 119.99697 * 240.00031 * 4 2 1 6 6 C 1.37877 * 120.00530 * 59.99902 * 4 2 1 7 7 N 1.31514 * 119.99773 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 120.00377 * 180.02562 * 6 4 2 9 9 H 1.48502 * 109.47247 * 89.99524 * 8 6 4 10 10 H 1.48497 * 109.47061 * 209.99935 * 8 6 4 11 11 H 1.48502 * 109.46798 * 330.00010 * 8 6 4 12 12 N 1.46899 * 109.46973 * 120.00620 * 2 1 3 13 13 C 1.46904 * 110.99894 * 274.99426 * 12 2 1 14 14 C 1.50697 * 109.47072 * 180.02562 * 13 12 2 15 15 N 1.33244 * 125.52726 * 90.02562 * 14 13 12 16 16 C 1.30832 * 109.83031 * 179.73720 * 15 14 13 17 17 N 1.34430 * 108.07731 * 0.02562 * 16 15 14 18 18 C 1.46499 * 126.82518 * 179.97438 * 17 16 15 19 19 N 1.30715 * 125.52674 * 269.72538 * 14 13 12 20 20 H 1.08999 * 109.47370 * 179.97438 * 1 2 3 21 21 H 1.09009 * 109.46885 * 299.99571 * 1 2 3 22 22 H 1.08999 * 109.47449 * 59.98991 * 1 2 3 23 23 H 0.96998 * 120.00127 * 179.97438 * 7 6 4 24 24 H 1.00894 * 110.99961 * 38.95121 * 12 2 1 25 25 H 1.09003 * 109.46718 * 60.00682 * 13 12 2 26 26 H 1.08999 * 109.47285 * 300.00841 * 13 12 2 27 27 H 1.07993 * 125.96198 * 180.02562 * 16 15 14 28 28 H 1.09002 * 109.46976 * 90.00079 * 18 17 16 29 29 H 1.08997 * 109.47563 * 210.00558 * 18 17 16 30 30 H 1.09004 * 109.46586 * 330.00311 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7103 -1.2306 5 1 2.6531 -1.5884 -1.1316 6 6 1.6991 -0.2391 -2.4828 7 7 0.9426 0.8299 -2.6034 8 14 2.3211 -1.1200 -4.0081 9 1 1.3425 -2.1613 -4.4121 10 1 2.4863 -0.1409 -5.1123 11 1 3.6291 -1.7580 -3.7124 12 7 2.0196 -0.6926 1.1994 13 6 2.0825 0.2224 2.3469 14 6 2.5885 -0.5218 3.5556 15 7 3.8668 -0.6416 3.9121 16 6 3.9569 -1.3446 5.0118 17 7 2.7142 -1.6947 5.3861 18 6 2.3413 -2.4870 6.5606 19 7 1.8442 -1.1499 4.4275 20 1 -0.3634 -1.0276 -0.0005 21 1 -0.3633 0.5138 0.8901 22 1 -0.3634 0.5140 -0.8899 23 1 0.7086 1.1616 -3.4843 24 1 1.4495 -1.4980 1.4099 25 1 1.0871 0.6161 2.5526 26 1 2.7589 1.0460 2.1182 27 1 4.8703 -1.5992 5.5287 28 1 2.1740 -1.8229 7.4086 29 1 1.4280 -3.0430 6.3488 30 1 3.1445 -3.1845 6.7981 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000218748153.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:04 Heat of formation + Delta-G solvation = 93.181474 kcal Electronic energy + Delta-G solvation = -13411.153233 eV Core-core repulsion = 11050.652094 eV Total energy + Delta-G solvation = -2360.501139 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.118 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -41.83731 -36.12395 -34.04524 -32.45069 -31.04268 -29.10167 -27.00719 -25.13231 -24.31850 -21.91481 -20.22254 -20.10054 -16.98154 -16.15458 -15.87627 -15.00332 -14.73087 -14.33676 -13.75453 -13.27976 -13.05582 -12.82805 -12.27050 -11.64936 -11.60283 -11.46628 -10.88608 -10.71818 -10.49058 -10.09383 -9.92049 -9.73274 -9.61234 -9.30407 -8.95327 -8.30051 -7.20686 -5.92210 -3.94870 1.77096 2.42677 3.16628 3.38143 3.44045 3.49943 4.33974 4.47776 4.51430 4.93227 4.94211 5.18051 5.29796 5.39503 5.61865 6.11869 6.16277 6.46967 6.65240 6.76420 6.89617 6.94090 7.13855 7.39011 7.79375 7.94172 8.30349 8.35883 8.56515 8.64992 9.11987 9.69899 11.15026 Molecular weight = 210.12amu Principal moments of inertia in cm(-1) A = 0.059189 B = 0.006147 C = 0.005913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 472.945959 B = 4554.076542 C = 4733.915207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.212 3.788 3 H 0.038 0.962 4 C -0.492 4.492 5 H 0.063 0.937 6 C 0.055 3.945 7 N -0.898 5.898 8 Si 0.898 3.102 9 H -0.283 1.283 10 H -0.288 1.288 11 H -0.274 1.274 12 N -0.674 5.674 13 C 0.150 3.850 14 C 0.246 3.754 15 N -0.526 5.526 16 C 0.244 3.756 17 N -0.394 5.394 18 C 0.100 3.900 19 N -0.322 5.322 20 H 0.028 0.972 21 H 0.006 0.994 22 H 0.090 0.910 23 H 0.259 0.741 24 H 0.327 0.673 25 H 0.044 0.956 26 H 0.093 0.907 27 H 0.215 0.785 28 H 0.075 0.925 29 H 0.089 0.911 30 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.695 -4.694 16.403 17.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.105 3.895 3 H 0.055 0.945 4 C -0.531 4.531 5 H 0.081 0.919 6 C -0.145 4.145 7 N -0.538 5.538 8 Si 0.727 3.273 9 H -0.209 1.209 10 H -0.214 1.214 11 H -0.199 1.199 12 N -0.305 5.305 13 C 0.018 3.982 14 C -0.037 4.037 15 N -0.253 5.253 16 C -0.053 4.053 17 N -0.186 5.186 18 C -0.042 4.042 19 N -0.151 5.151 20 H 0.047 0.953 21 H 0.025 0.975 22 H 0.109 0.891 23 H 0.069 0.931 24 H 0.144 0.856 25 H 0.061 0.939 26 H 0.111 0.889 27 H 0.232 0.768 28 H 0.094 0.906 29 H 0.107 0.893 30 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 2.767 -4.436 15.952 16.787 hybrid contribution -0.510 -0.589 -0.249 0.818 sum 2.257 -5.026 15.704 16.642 Atomic orbital electron populations 1.22448 1.00546 0.99327 1.00611 1.19216 0.89673 0.94602 0.86025 0.94459 1.21139 1.30088 1.12406 0.89476 0.91921 1.24939 0.95383 0.95224 0.98996 1.69884 1.37423 1.23220 1.23305 0.86489 0.79238 0.79195 0.82415 1.20914 1.21382 1.19864 1.60810 1.58388 1.08772 1.02542 1.20200 0.98747 0.94319 0.84918 1.24502 0.86863 0.96100 0.96196 1.70452 1.21098 1.21174 1.12584 1.26043 0.90417 0.95212 0.93635 1.50385 1.05507 1.41335 1.21328 1.21849 1.03287 0.94819 0.84270 1.78050 1.16452 1.18186 1.02428 0.95296 0.97462 0.89123 0.93101 0.85628 0.93851 0.88919 0.76829 0.90633 0.89252 0.89230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.20 8.94 37.16 0.33 -3.87 16 2 C 0.21 5.52 2.57 -68.87 -0.18 5.34 16 3 H 0.04 1.04 7.80 -51.93 -0.41 0.64 16 4 C -0.49 -14.05 8.84 -34.44 -0.30 -14.36 16 5 H 0.06 1.82 7.81 -52.49 -0.41 1.41 16 6 C 0.05 1.55 5.30 -17.82 -0.09 1.46 16 7 N -0.90 -26.11 11.32 55.43 0.63 -25.48 16 8 Si 0.90 21.98 29.54 -169.99 -5.02 16.96 16 9 H -0.28 -6.84 7.11 56.52 0.40 -6.43 16 10 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 11 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 12 N -0.67 -15.52 6.22 -109.22 -0.68 -16.20 16 13 C 0.15 3.03 6.11 -4.98 -0.03 3.00 16 14 C 0.25 4.66 7.65 -156.85 -1.20 3.46 16 15 N -0.53 -9.36 11.19 -11.98 -0.13 -9.50 16 16 C 0.24 3.13 12.66 -90.65 -1.15 1.98 16 17 N -0.39 -5.12 4.04 -69.44 -0.28 -5.40 16 18 C 0.10 0.71 11.53 59.85 0.69 1.40 16 19 N -0.32 -5.64 12.70 32.42 0.41 -5.23 16 20 H 0.03 0.69 8.13 -51.93 -0.42 0.26 16 21 H 0.01 0.14 7.45 -51.92 -0.39 -0.24 16 22 H 0.09 2.46 6.07 -51.93 -0.32 2.14 16 23 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 24 H 0.33 7.38 8.46 -39.29 -0.33 7.05 16 25 H 0.04 0.85 7.44 -51.93 -0.39 0.46 16 26 H 0.09 1.87 8.06 -51.93 -0.42 1.46 16 27 H 0.22 1.53 8.06 -52.49 -0.42 1.11 16 28 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 LS Contribution 261.94 15.07 3.95 3.95 Total: -1.00 -33.52 261.94 -6.96 -40.48 By element: Atomic # 1 Polarization: 5.91 SS G_CDS: -3.90 Total: 2.00 kcal Atomic # 6 Polarization: 0.35 SS G_CDS: -1.93 Total: -1.59 kcal Atomic # 7 Polarization: -61.75 SS G_CDS: -0.05 Total: -61.81 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 3.95 Total: 3.95 kcal Total: -33.52 -6.96 -40.48 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000218748153.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.666 kcal (2) G-P(sol) polarization free energy of solvation -33.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.484 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds