Wall clock time and date at job start Mon Mar 30 2020 02:49:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08996 * 109.46877 * 2 1 4 4 C 1.50699 * 109.46728 * 240.00745 * 2 1 3 5 5 H 1.08002 * 119.99697 * 240.00031 * 4 2 1 6 6 C 1.37877 * 120.00530 * 59.99902 * 4 2 1 7 7 N 1.31514 * 119.99773 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 120.00377 * 180.02562 * 6 4 2 9 9 H 1.48502 * 109.47247 * 89.99524 * 8 6 4 10 10 H 1.48497 * 109.47061 * 209.99935 * 8 6 4 11 11 H 1.48502 * 109.46798 * 330.00010 * 8 6 4 12 12 N 1.46899 * 109.46973 * 120.00620 * 2 1 3 13 13 C 1.46904 * 110.99894 * 274.99426 * 12 2 1 14 14 C 1.50697 * 109.47072 * 180.02562 * 13 12 2 15 15 N 1.33244 * 125.52726 * 90.02562 * 14 13 12 16 16 C 1.30832 * 109.83031 * 179.73720 * 15 14 13 17 17 N 1.34430 * 108.07731 * 0.02562 * 16 15 14 18 18 C 1.46499 * 126.82518 * 179.97438 * 17 16 15 19 19 N 1.30715 * 125.52674 * 269.72538 * 14 13 12 20 20 H 1.08999 * 109.47370 * 179.97438 * 1 2 3 21 21 H 1.09009 * 109.46885 * 299.99571 * 1 2 3 22 22 H 1.08999 * 109.47449 * 59.98991 * 1 2 3 23 23 H 0.96998 * 120.00127 * 179.97438 * 7 6 4 24 24 H 1.00894 * 110.99961 * 38.95121 * 12 2 1 25 25 H 1.09003 * 109.46718 * 60.00682 * 13 12 2 26 26 H 1.08999 * 109.47285 * 300.00841 * 13 12 2 27 27 H 1.07993 * 125.96198 * 180.02562 * 16 15 14 28 28 H 1.09002 * 109.46976 * 90.00079 * 18 17 16 29 29 H 1.08997 * 109.47563 * 210.00558 * 18 17 16 30 30 H 1.09004 * 109.46586 * 330.00311 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7103 -1.2306 5 1 2.6531 -1.5884 -1.1316 6 6 1.6991 -0.2391 -2.4828 7 7 0.9426 0.8299 -2.6034 8 14 2.3211 -1.1200 -4.0081 9 1 1.3425 -2.1613 -4.4121 10 1 2.4863 -0.1409 -5.1123 11 1 3.6291 -1.7580 -3.7124 12 7 2.0196 -0.6926 1.1994 13 6 2.0825 0.2224 2.3469 14 6 2.5885 -0.5218 3.5556 15 7 3.8668 -0.6416 3.9121 16 6 3.9569 -1.3446 5.0118 17 7 2.7142 -1.6947 5.3861 18 6 2.3413 -2.4870 6.5606 19 7 1.8442 -1.1499 4.4275 20 1 -0.3634 -1.0276 -0.0005 21 1 -0.3633 0.5138 0.8901 22 1 -0.3634 0.5140 -0.8899 23 1 0.7086 1.1616 -3.4843 24 1 1.4495 -1.4980 1.4099 25 1 1.0871 0.6161 2.5526 26 1 2.7589 1.0460 2.1182 27 1 4.8703 -1.5992 5.5287 28 1 2.1740 -1.8229 7.4086 29 1 1.4280 -3.0430 6.3488 30 1 3.1445 -3.1845 6.7981 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000218748153.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:04 Heat of formation + Delta-G solvation = 69.330757 kcal Electronic energy + Delta-G solvation = -13412.187478 eV Core-core repulsion = 11050.652094 eV Total energy + Delta-G solvation = -2361.535383 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.118 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -42.98752 -37.96779 -35.30505 -34.26656 -32.39369 -30.77303 -28.15874 -27.23855 -25.86662 -22.93326 -22.18095 -21.49823 -18.51856 -17.71159 -17.02668 -16.69346 -16.20413 -15.92870 -15.36865 -14.68620 -14.17399 -13.98292 -13.86367 -13.53187 -13.22345 -12.83595 -12.72032 -12.62680 -12.40594 -12.17012 -11.92652 -11.08374 -10.96056 -10.80286 -10.47207 -10.41997 -9.05923 -8.08266 -6.19369 0.66133 1.44837 1.45656 1.53247 1.57389 1.91563 2.46842 3.19943 3.21916 3.56165 3.81907 4.04763 4.32018 4.46993 4.54994 4.70005 4.72339 4.76765 4.90363 5.07060 5.30665 5.36514 5.39500 5.69305 5.79672 6.02326 6.24810 6.58751 6.69212 6.92119 7.18460 7.49791 8.97645 Molecular weight = 210.12amu Principal moments of inertia in cm(-1) A = 0.059189 B = 0.006147 C = 0.005913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 472.945959 B = 4554.076542 C = 4733.915207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.217 3.783 3 H 0.010 0.990 4 C -0.516 4.516 5 H 0.051 0.949 6 C 0.010 3.990 7 N -0.921 5.921 8 Si 0.964 3.036 9 H -0.275 1.275 10 H -0.281 1.281 11 H -0.273 1.273 12 N -0.677 5.677 13 C 0.157 3.843 14 C 0.225 3.775 15 N -0.573 5.573 16 C 0.259 3.741 17 N -0.387 5.387 18 C 0.089 3.911 19 N -0.347 5.347 20 H 0.030 0.970 21 H 0.026 0.974 22 H 0.066 0.934 23 H 0.262 0.738 24 H 0.329 0.671 25 H 0.046 0.954 26 H 0.082 0.918 27 H 0.271 0.729 28 H 0.095 0.905 29 H 0.086 0.914 30 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.458 -6.074 17.810 19.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.109 3.891 3 H 0.028 0.972 4 C -0.555 4.555 5 H 0.070 0.930 6 C -0.188 4.188 7 N -0.561 5.561 8 Si 0.789 3.211 9 H -0.200 1.200 10 H -0.207 1.207 11 H -0.197 1.197 12 N -0.308 5.308 13 C 0.025 3.975 14 C -0.058 4.058 15 N -0.301 5.301 16 C -0.037 4.037 17 N -0.178 5.178 18 C -0.051 4.051 19 N -0.178 5.178 20 H 0.050 0.950 21 H 0.045 0.955 22 H 0.085 0.915 23 H 0.071 0.929 24 H 0.146 0.854 25 H 0.064 0.936 26 H 0.101 0.899 27 H 0.287 0.713 28 H 0.114 0.886 29 H 0.105 0.895 30 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 3.522 -5.836 17.407 18.694 hybrid contribution -0.724 -0.201 -0.509 0.908 sum 2.798 -6.037 16.898 18.160 Atomic orbital electron populations 1.22246 0.99644 0.99317 1.00345 1.18994 0.90272 0.93047 0.86819 0.97201 1.21385 1.30606 1.12506 0.90999 0.93034 1.25708 0.95402 0.95878 1.01816 1.70001 1.37899 1.24137 1.24101 0.85473 0.78692 0.78220 0.78699 1.20026 1.20692 1.19738 1.60659 1.58129 1.09174 1.02858 1.20001 0.98767 0.93837 0.84894 1.24044 0.87806 0.97532 0.96417 1.70352 1.20891 1.23596 1.15296 1.27002 0.91862 0.92787 0.92053 1.50703 1.05100 1.40576 1.21419 1.22362 1.04872 0.95324 0.82508 1.77903 1.18057 1.18516 1.03335 0.95040 0.95471 0.91493 0.92875 0.85426 0.93595 0.89928 0.71317 0.88647 0.89543 0.85135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.83 8.94 71.98 0.64 -7.19 16 2 C 0.22 11.58 2.57 44.17 0.11 11.69 16 3 H 0.01 0.58 7.80 -2.39 -0.02 0.57 16 4 C -0.52 -29.98 8.84 25.60 0.23 -29.75 16 5 H 0.05 3.04 7.81 -2.91 -0.02 3.02 16 6 C 0.01 0.58 5.30 84.65 0.45 1.03 16 7 N -0.92 -54.11 11.32 21.45 0.24 -53.86 16 8 Si 0.96 45.17 29.54 68.60 2.03 47.20 16 9 H -0.27 -12.45 7.11 99.48 0.71 -11.75 16 10 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 11 H -0.27 -12.63 7.11 99.48 0.71 -11.93 16 12 N -0.68 -31.87 6.22 -499.46 -3.11 -34.98 16 13 C 0.16 6.48 6.11 85.56 0.52 7.01 16 14 C 0.22 8.51 7.65 138.63 1.06 9.57 16 15 N -0.57 -19.87 11.19 -191.81 -2.15 -22.02 16 16 C 0.26 5.88 12.66 180.36 2.28 8.16 16 17 N -0.39 -9.02 4.04 -373.62 -1.51 -10.53 16 18 C 0.09 0.93 11.53 127.77 1.47 2.40 16 19 N -0.35 -11.87 12.70 -51.33 -0.65 -12.52 16 20 H 0.03 1.51 8.13 -2.39 -0.02 1.49 16 21 H 0.03 1.20 7.45 -2.38 -0.02 1.18 16 22 H 0.07 3.69 6.07 -2.39 -0.01 3.67 16 23 H 0.26 14.58 8.31 -92.71 -0.77 13.81 16 24 H 0.33 15.08 8.46 -89.70 -0.76 14.32 16 25 H 0.05 1.84 7.44 -2.39 -0.02 1.82 16 26 H 0.08 3.50 8.06 -2.39 -0.02 3.48 16 27 H 0.27 2.51 8.06 -2.91 -0.02 2.48 16 28 H 0.10 0.68 8.14 -2.39 -0.02 0.66 16 29 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 30 H 0.13 0.34 8.14 -2.39 -0.02 0.32 16 Total: -1.00 -73.78 261.94 2.01 -71.77 By element: Atomic # 1 Polarization: 11.64 SS G_CDS: 0.38 Total: 12.02 kcal Atomic # 6 Polarization: -3.86 SS G_CDS: 6.77 Total: 2.92 kcal Atomic # 7 Polarization: -126.74 SS G_CDS: -7.17 Total: -133.91 kcal Atomic # 14 Polarization: 45.17 SS G_CDS: 2.03 Total: 47.20 kcal Total: -73.78 2.01 -71.77 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000218748153.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.104 kcal (2) G-P(sol) polarization free energy of solvation -73.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.773 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds