Wall clock time and date at job start Mon Mar 30 2020 02:20:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50699 * 120.00033 * 2 1 4 4 N 1.46895 * 109.47443 * 124.99730 * 3 2 1 5 5 C 1.47192 * 110.99957 * 47.10364 * 4 3 2 6 6 C 1.52988 * 108.72899 * 54.37099 * 5 4 3 7 7 N 1.46013 * 110.04153 * 50.29171 * 6 5 4 8 8 C 1.33709 * 122.92685 * 341.83708 * 7 6 5 9 9 O 1.21282 * 118.62260 * 181.71478 * 8 7 6 10 10 C 1.46902 * 111.00084 * 169.99530 * 4 3 2 11 11 H 1.08997 * 109.38505 * 166.77651 * 10 4 3 12 12 C 1.50702 * 109.38516 * 47.08978 * 10 4 3 13 13 H 1.07997 * 119.99812 * 359.48055 * 12 10 4 14 14 C 1.37876 * 119.99977 * 179.47972 * 12 10 4 15 15 N 1.31512 * 120.00267 * 0.02562 * 14 12 10 16 16 Si 1.86795 * 119.99992 * 179.97438 * 14 12 10 17 17 H 1.48499 * 109.47003 * 60.00161 * 16 14 12 18 18 H 1.48498 * 109.47187 * 180.02562 * 16 14 12 19 19 H 1.48502 * 109.47422 * 300.00291 * 16 14 12 20 20 H 1.07997 * 120.00120 * 180.02562 * 1 2 3 21 21 H 1.07995 * 119.99583 * 0.02562 * 1 2 3 22 22 H 1.08002 * 119.99747 * 179.97438 * 2 1 3 23 23 H 1.08998 * 109.47208 * 4.99392 * 3 2 1 24 24 H 1.09001 * 109.46728 * 244.99842 * 3 2 1 25 25 H 1.08996 * 109.59695 * 294.59317 * 5 4 3 26 26 H 1.09006 * 109.71761 * 174.21532 * 5 4 3 27 27 H 1.08995 * 109.37382 * 290.11560 * 6 5 4 28 28 H 1.09003 * 109.27942 * 170.40297 * 6 5 4 29 29 H 0.97002 * 118.53356 * 161.86491 * 7 6 5 30 30 H 0.96995 * 120.00757 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9963 1.3320 1.1345 5 6 3.7594 0.0763 1.2199 6 6 4.4404 -0.1773 -0.1263 7 7 5.1630 1.0172 -0.5543 8 6 4.9237 2.2316 -0.0487 9 8 5.5486 3.1756 -0.4839 10 6 3.9126 2.4760 1.0356 11 1 4.4276 2.6103 1.9868 12 6 3.1260 3.7207 0.7149 13 1 2.0549 3.6650 0.5884 14 6 3.7737 4.9307 0.5830 15 7 5.0781 4.9985 0.7365 16 14 2.7988 6.4735 0.1847 17 1 1.7985 6.7169 1.2549 18 1 3.7219 7.6333 0.0962 19 1 2.1009 6.2966 -1.1141 20 1 -0.5400 -0.9353 0.0004 21 1 -0.5399 0.9353 -0.0004 22 1 1.8500 -0.9353 0.0004 23 1 1.3586 2.1316 0.0895 24 1 2.6213 1.4025 -0.9314 25 1 3.0832 -0.7475 1.4485 26 1 4.5144 0.1572 2.0020 27 1 3.6860 -0.4299 -0.8713 28 1 5.1406 -1.0065 -0.0249 29 1 5.8468 0.9255 -1.2362 30 1 5.5339 5.8496 0.6433 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000218954462.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:24 Heat of formation + Delta-G solvation = 22.649267 kcal Electronic energy + Delta-G solvation = -14611.639496 eV Core-core repulsion = 12215.787100 eV Total energy + Delta-G solvation = -2395.852396 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.111 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.55183 -36.37030 -33.97600 -33.05451 -31.55906 -29.01918 -26.63884 -25.21211 -22.46072 -21.91590 -19.30137 -18.28549 -16.63288 -16.06152 -15.45529 -14.86443 -14.30179 -14.28516 -13.73772 -13.50712 -12.74496 -12.30843 -12.24852 -11.85925 -11.44321 -11.16067 -10.90923 -10.76601 -10.61773 -10.17628 -9.85741 -9.25938 -9.17300 -8.69186 -8.18642 -7.99641 -7.12655 -5.84922 -3.94985 2.61651 3.38832 3.43049 3.44481 4.21897 4.27925 4.53134 4.93907 5.29904 5.38907 5.44159 5.51267 5.59791 5.77086 6.03271 6.11178 6.24194 6.34136 6.36278 6.60208 6.93824 7.15457 7.21421 7.53248 7.80726 7.94287 8.00641 8.36978 8.57780 8.99177 9.65498 9.83063 11.15981 Molecular weight = 210.11amu Principal moments of inertia in cm(-1) A = 0.031355 B = 0.013611 C = 0.010352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 892.773388 B = 2056.689229 C = 2704.133888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.145 4.145 3 C 0.086 3.914 4 N -0.519 5.519 5 C 0.034 3.966 6 C 0.082 3.918 7 N -0.755 5.755 8 C 0.472 3.528 9 O -0.486 6.486 10 C 0.214 3.786 11 H 0.069 0.931 12 C -0.544 4.544 13 H 0.069 0.931 14 C 0.075 3.925 15 N -0.822 5.822 16 Si 0.895 3.105 17 H -0.276 1.276 18 H -0.288 1.288 19 H -0.279 1.279 20 H 0.090 0.910 21 H 0.096 0.904 22 H 0.103 0.897 23 H 0.088 0.912 24 H 0.042 0.958 25 H 0.081 0.919 26 H 0.074 0.926 27 H 0.051 0.949 28 H 0.058 0.942 29 H 0.374 0.626 30 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.020 -10.515 -0.945 11.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.163 4.163 3 C -0.041 4.041 4 N -0.242 5.242 5 C -0.095 4.095 6 C -0.045 4.045 7 N -0.413 5.413 8 C 0.258 3.742 9 O -0.354 6.354 10 C 0.104 3.896 11 H 0.086 0.914 12 C -0.582 4.582 13 H 0.087 0.913 14 C -0.134 4.134 15 N -0.454 5.454 16 Si 0.723 3.277 17 H -0.201 1.201 18 H -0.214 1.214 19 H -0.204 1.204 20 H 0.108 0.892 21 H 0.114 0.886 22 H 0.121 0.879 23 H 0.106 0.894 24 H 0.060 0.940 25 H 0.099 0.901 26 H 0.093 0.907 27 H 0.070 0.930 28 H 0.076 0.924 29 H 0.207 0.793 30 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -3.926 -9.697 -0.542 10.475 hybrid contribution 0.400 0.432 -1.362 1.484 sum -3.526 -9.265 -1.905 10.095 Atomic orbital electron populations 1.23730 0.95935 1.01297 1.02627 1.23216 0.96121 0.98685 0.98310 1.21219 0.95678 0.94479 0.92751 1.62788 1.18163 1.01954 1.41323 1.22508 0.96979 0.94712 0.95341 1.21872 0.96017 0.88463 0.98167 1.46411 1.41985 1.08190 1.44755 1.23003 0.85057 0.80783 0.85374 1.90764 1.47852 1.39026 1.57794 1.19503 0.87967 0.88811 0.93288 0.91352 1.20628 0.93563 0.90134 1.53867 0.91301 1.24955 0.94650 0.98933 0.94888 1.70205 1.07041 1.24615 1.43547 0.86627 0.79714 0.82553 0.78817 1.20141 1.21390 1.20421 0.89161 0.88573 0.87934 0.89364 0.93978 0.90057 0.90741 0.93039 0.92394 0.79256 0.93261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.68 14.32 29.01 0.42 -2.27 16 2 C -0.15 -2.18 8.05 -36.03 -0.29 -2.47 16 3 C 0.09 1.65 4.19 -4.98 -0.02 1.63 16 4 N -0.52 -10.71 5.05 -230.90 -1.17 -11.87 16 5 C 0.03 0.56 5.43 -3.67 -0.02 0.54 16 6 C 0.08 1.28 6.34 -4.31 -0.03 1.25 16 7 N -0.75 -15.05 5.34 -61.06 -0.33 -15.37 16 8 C 0.47 11.97 6.57 -11.68 -0.08 11.90 16 9 O -0.49 -14.50 13.79 5.56 0.08 -14.43 16 10 C 0.21 5.43 2.46 -70.23 -0.17 5.25 16 11 H 0.07 1.89 8.14 -51.93 -0.42 1.47 16 12 C -0.54 -15.10 7.94 -34.44 -0.27 -15.37 16 13 H 0.07 1.86 5.89 -52.49 -0.31 1.55 16 14 C 0.08 2.16 4.97 -17.82 -0.09 2.07 16 15 N -0.82 -24.92 10.29 55.43 0.57 -24.35 16 16 Si 0.90 22.02 29.54 -169.99 -5.02 17.00 16 17 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 18 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 19 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 20 H 0.09 1.01 8.06 -52.49 -0.42 0.59 16 21 H 0.10 1.32 7.84 -52.49 -0.41 0.91 16 22 H 0.10 1.35 6.03 -52.49 -0.32 1.03 16 23 H 0.09 1.84 5.94 -51.93 -0.31 1.53 16 24 H 0.04 0.89 6.35 -51.93 -0.33 0.56 16 25 H 0.08 1.12 6.54 -51.93 -0.34 0.78 16 26 H 0.07 1.24 8.08 -51.93 -0.42 0.82 16 27 H 0.05 0.76 6.07 -51.93 -0.32 0.45 16 28 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 29 H 0.37 6.93 8.84 -40.82 -0.36 6.57 16 30 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 LS Contribution 239.82 15.07 3.61 3.61 Total: -1.00 -32.05 239.82 -6.32 -38.37 By element: Atomic # 1 Polarization: 8.01 SS G_CDS: -3.51 Total: 4.50 kcal Atomic # 6 Polarization: 3.09 SS G_CDS: -0.55 Total: 2.54 kcal Atomic # 7 Polarization: -50.67 SS G_CDS: -0.92 Total: -51.59 kcal Atomic # 8 Polarization: -14.50 SS G_CDS: 0.08 Total: -14.43 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 3.61 Total: 3.61 kcal Total: -32.05 -6.32 -38.37 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000218954462.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.021 kcal (2) G-P(sol) polarization free energy of solvation -32.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.372 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds