Wall clock time and date at job start Mon Mar 30 2020 02:20:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50699 * 120.00033 * 2 1 4 4 N 1.46895 * 109.47443 * 124.99730 * 3 2 1 5 5 C 1.47192 * 110.99957 * 47.10364 * 4 3 2 6 6 C 1.52988 * 108.72899 * 54.37099 * 5 4 3 7 7 N 1.46013 * 110.04153 * 50.29171 * 6 5 4 8 8 C 1.33709 * 122.92685 * 341.83708 * 7 6 5 9 9 O 1.21282 * 118.62260 * 181.71478 * 8 7 6 10 10 C 1.46902 * 111.00084 * 169.99530 * 4 3 2 11 11 H 1.08997 * 109.38505 * 166.77651 * 10 4 3 12 12 C 1.50702 * 109.38516 * 47.08978 * 10 4 3 13 13 H 1.07997 * 119.99812 * 359.48055 * 12 10 4 14 14 C 1.37876 * 119.99977 * 179.47972 * 12 10 4 15 15 N 1.31512 * 120.00267 * 0.02562 * 14 12 10 16 16 Si 1.86795 * 119.99992 * 179.97438 * 14 12 10 17 17 H 1.48499 * 109.47003 * 60.00161 * 16 14 12 18 18 H 1.48498 * 109.47187 * 180.02562 * 16 14 12 19 19 H 1.48502 * 109.47422 * 300.00291 * 16 14 12 20 20 H 1.07997 * 120.00120 * 180.02562 * 1 2 3 21 21 H 1.07995 * 119.99583 * 0.02562 * 1 2 3 22 22 H 1.08002 * 119.99747 * 179.97438 * 2 1 3 23 23 H 1.08998 * 109.47208 * 4.99392 * 3 2 1 24 24 H 1.09001 * 109.46728 * 244.99842 * 3 2 1 25 25 H 1.08996 * 109.59695 * 294.59317 * 5 4 3 26 26 H 1.09006 * 109.71761 * 174.21532 * 5 4 3 27 27 H 1.08995 * 109.37382 * 290.11560 * 6 5 4 28 28 H 1.09003 * 109.27942 * 170.40297 * 6 5 4 29 29 H 0.97002 * 118.53356 * 161.86491 * 7 6 5 30 30 H 0.96995 * 120.00757 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9963 1.3320 1.1345 5 6 3.7594 0.0763 1.2199 6 6 4.4404 -0.1773 -0.1263 7 7 5.1630 1.0172 -0.5543 8 6 4.9237 2.2316 -0.0487 9 8 5.5486 3.1756 -0.4839 10 6 3.9126 2.4760 1.0356 11 1 4.4276 2.6103 1.9868 12 6 3.1260 3.7207 0.7149 13 1 2.0549 3.6650 0.5884 14 6 3.7737 4.9307 0.5830 15 7 5.0781 4.9985 0.7365 16 14 2.7988 6.4735 0.1847 17 1 1.7985 6.7169 1.2549 18 1 3.7219 7.6333 0.0962 19 1 2.1009 6.2966 -1.1141 20 1 -0.5400 -0.9353 0.0004 21 1 -0.5399 0.9353 -0.0004 22 1 1.8500 -0.9353 0.0004 23 1 1.3586 2.1316 0.0895 24 1 2.6213 1.4025 -0.9314 25 1 3.0832 -0.7475 1.4485 26 1 4.5144 0.1572 2.0020 27 1 3.6860 -0.4299 -0.8713 28 1 5.1406 -1.0065 -0.0249 29 1 5.8468 0.9255 -1.2362 30 1 5.5339 5.8496 0.6433 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000218954462.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:24 Heat of formation + Delta-G solvation = -3.455912 kcal Electronic energy + Delta-G solvation = -14612.771501 eV Core-core repulsion = 12215.787100 eV Total energy + Delta-G solvation = -2396.984401 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.111 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.26893 -38.15802 -35.66868 -34.71093 -33.32732 -30.73265 -28.25683 -26.97852 -24.25738 -23.49267 -20.62672 -19.96405 -18.45774 -17.85340 -17.15190 -16.41262 -16.28140 -15.74021 -15.46572 -15.19075 -14.35246 -14.08876 -13.66037 -13.52770 -13.16872 -12.74217 -12.65206 -12.61726 -12.23426 -11.85835 -11.50163 -11.16905 -10.86779 -10.43179 -10.13017 -9.69332 -8.81497 -8.00984 -6.15975 1.39728 1.43194 1.48297 1.50126 2.24380 2.49402 2.66909 3.29106 3.39054 4.05434 4.09350 4.26107 4.36970 4.49484 4.59474 4.71860 4.81087 5.01859 5.05545 5.10870 5.30162 5.62503 5.78081 5.86730 6.03706 6.15449 6.29951 6.58010 6.64997 6.95048 7.48331 7.92387 8.99451 Molecular weight = 210.11amu Principal moments of inertia in cm(-1) A = 0.031355 B = 0.013611 C = 0.010352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 892.773388 B = 2056.689229 C = 2704.133888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.159 4.159 3 C 0.093 3.907 4 N -0.527 5.527 5 C 0.030 3.970 6 C 0.078 3.922 7 N -0.744 5.744 8 C 0.470 3.530 9 O -0.542 6.542 10 C 0.214 3.786 11 H 0.034 0.966 12 C -0.555 4.555 13 H 0.069 0.931 14 C 0.021 3.979 15 N -0.856 5.856 16 Si 0.957 3.043 17 H -0.262 1.262 18 H -0.288 1.288 19 H -0.275 1.275 20 H 0.124 0.876 21 H 0.087 0.913 22 H 0.132 0.868 23 H 0.061 0.939 24 H 0.019 0.981 25 H 0.122 0.878 26 H 0.069 0.931 27 H 0.070 0.930 28 H 0.102 0.898 29 H 0.384 0.616 30 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.564 -12.923 -1.268 14.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.177 4.177 3 C -0.034 4.034 4 N -0.250 5.250 5 C -0.099 4.099 6 C -0.047 4.047 7 N -0.400 5.400 8 C 0.256 3.744 9 O -0.415 6.415 10 C 0.103 3.897 11 H 0.051 0.949 12 C -0.593 4.593 13 H 0.087 0.913 14 C -0.185 4.185 15 N -0.490 5.490 16 Si 0.783 3.217 17 H -0.186 1.186 18 H -0.214 1.214 19 H -0.201 1.201 20 H 0.143 0.857 21 H 0.105 0.895 22 H 0.150 0.850 23 H 0.079 0.921 24 H 0.037 0.963 25 H 0.140 0.860 26 H 0.088 0.912 27 H 0.088 0.912 28 H 0.120 0.880 29 H 0.219 0.781 30 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -5.501 -12.184 -0.861 13.396 hybrid contribution 0.806 1.035 -1.241 1.806 sum -4.696 -11.149 -2.102 12.279 Atomic orbital electron populations 1.23990 0.95530 1.02537 0.99546 1.23060 0.96468 0.97263 1.00952 1.21067 0.94848 0.96435 0.91048 1.62651 1.17935 1.02277 1.42153 1.22720 0.97540 0.93738 0.95855 1.22184 0.97166 0.87459 0.97857 1.46114 1.41864 1.08036 1.44018 1.22789 0.84473 0.81799 0.85319 1.90728 1.49669 1.41441 1.59704 1.19176 0.88479 0.90348 0.91652 0.94852 1.20993 0.93835 0.91444 1.53019 0.91313 1.25807 0.95519 1.02203 0.94970 1.70397 1.08670 1.24727 1.45228 0.85643 0.78473 0.78734 0.78895 1.18646 1.21403 1.20095 0.85745 0.89491 0.85021 0.92110 0.96312 0.86034 0.91232 0.91209 0.87984 0.78136 0.93967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.15 14.32 67.78 0.97 -3.18 16 2 C -0.16 -4.23 8.05 25.64 0.21 -4.03 16 3 C 0.09 3.50 4.19 85.56 0.36 3.86 16 4 N -0.53 -21.39 5.05 -884.43 -4.47 -25.86 16 5 C 0.03 0.89 5.43 86.24 0.47 1.36 16 6 C 0.08 2.17 6.34 86.47 0.55 2.72 16 7 N -0.74 -28.83 5.34 -466.08 -2.49 -31.32 16 8 C 0.47 24.36 6.57 87.68 0.58 24.94 16 9 O -0.54 -33.59 13.79 -3.04 -0.04 -33.63 16 10 C 0.21 11.18 2.46 43.28 0.11 11.28 16 11 H 0.03 1.96 8.14 -2.39 -0.02 1.94 16 12 C -0.55 -31.76 7.94 25.60 0.20 -31.56 16 13 H 0.07 3.82 5.89 -2.91 -0.02 3.81 16 14 C 0.02 1.23 4.97 84.65 0.42 1.65 16 15 N -0.86 -54.14 10.29 21.45 0.22 -53.92 16 16 Si 0.96 46.33 29.54 68.60 2.03 48.36 16 17 H -0.26 -11.94 7.11 99.48 0.71 -11.24 16 18 H -0.29 -13.83 7.11 99.48 0.71 -13.13 16 19 H -0.28 -13.06 7.11 99.48 0.71 -12.36 16 20 H 0.12 2.11 8.06 -2.91 -0.02 2.09 16 21 H 0.09 2.19 7.84 -2.91 -0.02 2.16 16 22 H 0.13 2.74 6.03 -2.91 -0.02 2.72 16 23 H 0.06 2.56 5.94 -2.39 -0.01 2.54 16 24 H 0.02 0.78 6.35 -2.39 -0.02 0.77 16 25 H 0.12 2.75 6.54 -2.39 -0.02 2.73 16 26 H 0.07 2.18 8.08 -2.38 -0.02 2.16 16 27 H 0.07 1.76 6.07 -2.39 -0.01 1.75 16 28 H 0.10 2.05 8.14 -2.39 -0.02 2.03 16 29 H 0.38 13.76 8.84 -92.71 -0.82 12.94 16 30 H 0.25 15.36 8.31 -92.71 -0.77 14.59 16 Total: -1.00 -73.24 239.82 -0.56 -73.80 By element: Atomic # 1 Polarization: 15.19 SS G_CDS: 0.33 Total: 15.52 kcal Atomic # 6 Polarization: 3.19 SS G_CDS: 3.86 Total: 7.05 kcal Atomic # 7 Polarization: -104.36 SS G_CDS: -6.73 Total: -111.09 kcal Atomic # 8 Polarization: -33.59 SS G_CDS: -0.04 Total: -33.63 kcal Atomic # 14 Polarization: 46.33 SS G_CDS: 2.03 Total: 48.36 kcal Total: -73.24 -0.56 -73.80 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000218954462.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.340 kcal (2) G-P(sol) polarization free energy of solvation -73.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.796 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds