Wall clock time and date at job start Mon Mar 30 2020 02:54:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00017 * 2 1 4 4 H 1.48501 * 109.47483 * 89.99568 * 3 2 1 5 5 H 1.48499 * 109.47134 * 210.00082 * 3 2 1 6 6 H 1.48507 * 109.46904 * 329.99905 * 3 2 1 7 7 C 1.37871 * 120.00217 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00140 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00102 * 0.02562 * 7 2 1 10 10 H 1.09001 * 110.31600 * 302.21102 * 9 7 2 11 11 C 1.54511 * 110.35872 * 179.97438 * 9 7 2 12 12 C 1.54603 * 104.05656 * 217.31676 * 11 9 7 13 13 C 1.54018 * 103.93856 * 0.31313 * 12 11 9 14 14 C 1.52472 * 110.10544 * 264.66225 * 13 12 11 15 15 C 1.53090 * 109.53028 * 179.24830 * 14 13 12 16 16 C 1.53005 * 109.41842 * 59.15718 * 15 14 13 17 17 C 1.53007 * 109.56060 * 299.59468 * 16 15 14 18 18 C 1.52470 * 110.12387 * 142.27839 * 13 12 11 19 19 O 1.43912 * 105.39998 * 23.46251 * 13 12 11 20 20 H 0.97001 * 119.99646 * 179.97438 * 1 2 3 21 21 H 1.08999 * 110.51288 * 335.96271 * 11 9 7 22 22 H 1.08999 * 110.51206 * 98.53781 * 11 9 7 23 23 H 1.08999 * 110.53976 * 118.92398 * 12 11 9 24 24 H 1.08996 * 110.53507 * 241.55995 * 12 11 9 25 25 H 1.09002 * 109.46216 * 299.26108 * 14 13 12 26 26 H 1.08994 * 109.46585 * 59.23112 * 14 13 12 27 27 H 1.08998 * 109.47902 * 299.17504 * 15 14 13 28 28 H 1.08999 * 109.49125 * 179.14595 * 15 14 13 29 29 H 1.09000 * 109.45472 * 179.57138 * 16 15 14 30 30 H 1.08998 * 109.43746 * 59.61478 * 16 15 14 31 31 H 1.09002 * 109.48182 * 300.42818 * 17 16 15 32 32 H 1.08995 * 109.48929 * 180.39796 * 17 16 15 33 33 H 1.09000 * 109.45731 * 300.76430 * 18 13 12 34 34 H 1.09001 * 109.46264 * 60.73524 * 18 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 1.4001 5 1 3.5467 1.4402 -0.7000 6 1 1.4466 2.6527 -0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 1 0.5897 -2.5543 0.8652 11 6 2.2369 -3.6889 0.0005 12 6 1.5581 -4.7391 -0.9086 13 6 0.2515 -4.0556 -1.3534 14 6 -0.8968 -4.4774 -0.4433 15 6 -2.1841 -3.7765 -0.8852 16 6 -2.4956 -4.1519 -2.3354 17 6 -1.3451 -3.7035 -3.2391 18 6 -0.0549 -4.4042 -2.8057 19 8 0.4953 -2.6433 -1.2227 20 1 -0.4850 -0.8401 -0.0004 21 1 3.1985 -3.3882 -0.4153 22 1 2.3639 -4.0797 1.0101 23 1 2.1861 -4.9612 -1.7713 24 1 1.3444 -5.6491 -0.3481 25 1 -1.0316 -5.5572 -0.5055 26 1 -0.6664 -4.1989 0.5850 27 1 -2.0547 -2.6969 -0.8090 28 1 -3.0076 -4.0901 -0.2437 29 1 -3.4162 -3.6592 -2.6483 30 1 -2.6177 -5.2323 -2.4122 31 1 -1.2178 -2.6240 -3.1569 32 1 -1.5714 -3.9651 -4.2727 33 1 0.7681 -4.0743 -3.4397 34 1 -0.1776 -5.4830 -2.9022 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000229314002.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:16 Heat of formation + Delta-G solvation = -80.653944 kcal Electronic energy + Delta-G solvation = -15005.897301 eV Core-core repulsion = 12709.105685 eV Total energy + Delta-G solvation = -2296.791616 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.136 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.50011 -35.79992 -32.66258 -31.10474 -30.39243 -29.35883 -25.84790 -23.21051 -22.23237 -20.85140 -20.00154 -18.65043 -16.99734 -15.32362 -14.87438 -14.15827 -14.04523 -13.69667 -13.55685 -13.16771 -12.63450 -12.30744 -11.78152 -11.65655 -11.29185 -11.02930 -10.75001 -10.70299 -10.60398 -10.33938 -10.22389 -10.06030 -9.95867 -9.51922 -9.39915 -8.71166 -8.47692 -8.05180 -6.32425 -4.09557 3.45006 3.49914 3.65490 4.55484 4.87701 5.17207 5.22091 5.36357 5.56579 5.61301 5.63907 5.69264 5.82358 5.93010 5.98636 6.08777 6.10372 6.15762 6.30892 6.37552 6.39267 6.52876 6.60387 6.66123 6.74724 6.79021 6.83098 6.92384 7.03599 7.34687 8.10836 8.38058 8.55513 8.92449 9.71841 11.09008 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.037091 B = 0.011121 C = 0.009820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 754.716122 B = 2517.182081 C = 2850.693397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.031 3.969 3 Si 1.071 2.929 4 H -0.288 1.288 5 H -0.289 1.289 6 H -0.284 1.284 7 C -0.604 4.604 8 H 0.054 0.946 9 C 0.188 3.812 10 H 0.017 0.983 11 C -0.139 4.139 12 C -0.145 4.145 13 C 0.096 3.904 14 C -0.127 4.127 15 C -0.115 4.115 16 C -0.113 4.113 17 C -0.116 4.116 18 C -0.100 4.100 19 O -0.353 6.353 20 H 0.279 0.721 21 H 0.063 0.937 22 H 0.052 0.948 23 H 0.061 0.939 24 H 0.058 0.942 25 H 0.054 0.946 26 H 0.061 0.939 27 H 0.076 0.924 28 H 0.050 0.950 29 H 0.055 0.945 30 H 0.051 0.949 31 H 0.074 0.926 32 H 0.051 0.949 33 H 0.063 0.937 34 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.835 -8.922 -2.997 9.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.177 4.177 3 Si 0.899 3.101 4 H -0.215 1.215 5 H -0.215 1.215 6 H -0.209 1.209 7 C -0.641 4.641 8 H 0.073 0.927 9 C 0.133 3.867 10 H 0.035 0.965 11 C -0.177 4.177 12 C -0.183 4.183 13 C 0.055 3.945 14 C -0.165 4.165 15 C -0.153 4.153 16 C -0.150 4.150 17 C -0.153 4.153 18 C -0.137 4.137 19 O -0.272 6.272 20 H 0.090 0.910 21 H 0.082 0.918 22 H 0.070 0.930 23 H 0.080 0.920 24 H 0.077 0.923 25 H 0.073 0.927 26 H 0.080 0.920 27 H 0.095 0.905 28 H 0.069 0.931 29 H 0.073 0.927 30 H 0.070 0.930 31 H 0.093 0.907 32 H 0.070 0.930 33 H 0.082 0.918 34 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -2.103 -7.120 -3.140 8.060 hybrid contribution 0.344 -1.971 0.187 2.009 sum -1.759 -9.090 -2.952 9.718 Atomic orbital electron populations 1.70646 1.06880 1.31692 1.43540 1.25842 0.96592 1.02598 0.92670 0.83537 0.74770 0.75126 0.76650 1.21455 1.21471 1.20940 1.21951 0.93830 0.90855 1.57466 0.92732 1.20673 0.88023 0.93822 0.84167 0.96525 1.22917 1.00672 0.96332 0.97785 1.22916 0.97433 0.98369 0.99598 1.21709 0.92642 0.86210 0.93949 1.21858 0.95768 0.98897 0.99935 1.21449 0.96247 1.02277 0.95318 1.21478 0.97894 0.99850 0.95822 1.21470 0.94380 1.01983 0.97511 1.21417 0.97969 0.98935 0.95422 1.89408 1.74727 1.18225 1.44867 0.90953 0.91817 0.92969 0.91996 0.92308 0.92697 0.91980 0.90538 0.93087 0.92653 0.93003 0.90733 0.93044 0.91827 0.92303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.49 13.59 55.43 0.75 -26.73 16 2 C 0.03 0.91 5.43 -17.82 -0.10 0.81 16 3 Si 1.07 25.65 29.90 -169.99 -5.08 20.57 16 4 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 5 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 6 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 7 C -0.60 -17.51 8.77 -34.44 -0.30 -17.81 16 8 H 0.05 1.56 7.56 -52.48 -0.40 1.17 16 9 C 0.19 4.91 2.19 -27.09 -0.06 4.85 16 10 H 0.02 0.47 7.08 -51.93 -0.37 0.10 16 11 C -0.14 -3.02 6.62 -25.10 -0.17 -3.19 16 12 C -0.15 -2.71 6.16 -25.36 -0.16 -2.87 16 13 C 0.10 1.90 0.68 -90.63 -0.06 1.83 16 14 C -0.13 -2.29 4.64 -26.95 -0.12 -2.42 16 15 C -0.12 -2.03 5.82 -26.68 -0.16 -2.18 16 16 C -0.11 -1.74 5.91 -26.72 -0.16 -1.90 16 17 C -0.12 -1.94 5.82 -26.68 -0.16 -2.10 16 18 C -0.10 -1.72 4.84 -26.96 -0.13 -1.85 16 19 O -0.35 -8.94 8.90 -35.23 -0.31 -9.25 16 20 H 0.28 8.62 6.66 -40.82 -0.27 8.35 16 21 H 0.06 1.41 7.70 -51.93 -0.40 1.01 16 22 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 23 H 0.06 1.08 7.85 -51.93 -0.41 0.68 16 24 H 0.06 0.96 7.85 -51.93 -0.41 0.55 16 25 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 26 H 0.06 1.21 6.98 -51.93 -0.36 0.84 16 27 H 0.08 1.61 7.83 -51.93 -0.41 1.20 16 28 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.07 1.48 7.83 -51.93 -0.41 1.07 16 32 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 33 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 34 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 LS Contribution 263.06 15.07 3.96 3.96 Total: -1.00 -30.67 263.06 -7.85 -38.53 By element: Atomic # 1 Polarization: 5.35 SS G_CDS: -5.60 Total: -0.26 kcal Atomic # 6 Polarization: -25.25 SS G_CDS: -1.57 Total: -26.82 kcal Atomic # 7 Polarization: -27.49 SS G_CDS: 0.75 Total: -26.73 kcal Atomic # 8 Polarization: -8.94 SS G_CDS: -0.31 Total: -9.25 kcal Atomic # 14 Polarization: 25.65 SS G_CDS: -5.08 Total: 20.57 kcal Total LS contribution 3.96 Total: 3.96 kcal Total: -30.67 -7.85 -38.53 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000229314002.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.129 kcal (2) G-P(sol) polarization free energy of solvation -30.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.525 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds