Wall clock time and date at job start Mon Mar 30 2020 02:54:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00017 * 2 1 4 4 H 1.48501 * 109.47483 * 89.99568 * 3 2 1 5 5 H 1.48499 * 109.47134 * 210.00082 * 3 2 1 6 6 H 1.48507 * 109.46904 * 329.99905 * 3 2 1 7 7 C 1.37871 * 120.00217 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00140 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00102 * 0.02562 * 7 2 1 10 10 H 1.09001 * 110.31600 * 302.21102 * 9 7 2 11 11 C 1.54511 * 110.35872 * 179.97438 * 9 7 2 12 12 C 1.54603 * 104.05656 * 217.31676 * 11 9 7 13 13 C 1.54018 * 103.93856 * 0.31313 * 12 11 9 14 14 C 1.52472 * 110.10544 * 264.66225 * 13 12 11 15 15 C 1.53090 * 109.53028 * 179.24830 * 14 13 12 16 16 C 1.53005 * 109.41842 * 59.15718 * 15 14 13 17 17 C 1.53007 * 109.56060 * 299.59468 * 16 15 14 18 18 C 1.52470 * 110.12387 * 142.27839 * 13 12 11 19 19 O 1.43912 * 105.39998 * 23.46251 * 13 12 11 20 20 H 0.97001 * 119.99646 * 179.97438 * 1 2 3 21 21 H 1.08999 * 110.51288 * 335.96271 * 11 9 7 22 22 H 1.08999 * 110.51206 * 98.53781 * 11 9 7 23 23 H 1.08999 * 110.53976 * 118.92398 * 12 11 9 24 24 H 1.08996 * 110.53507 * 241.55995 * 12 11 9 25 25 H 1.09002 * 109.46216 * 299.26108 * 14 13 12 26 26 H 1.08994 * 109.46585 * 59.23112 * 14 13 12 27 27 H 1.08998 * 109.47902 * 299.17504 * 15 14 13 28 28 H 1.08999 * 109.49125 * 179.14595 * 15 14 13 29 29 H 1.09000 * 109.45472 * 179.57138 * 16 15 14 30 30 H 1.08998 * 109.43746 * 59.61478 * 16 15 14 31 31 H 1.09002 * 109.48182 * 300.42818 * 17 16 15 32 32 H 1.08995 * 109.48929 * 180.39796 * 17 16 15 33 33 H 1.09000 * 109.45731 * 300.76430 * 18 13 12 34 34 H 1.09001 * 109.46264 * 60.73524 * 18 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 1.4001 5 1 3.5467 1.4402 -0.7000 6 1 1.4466 2.6527 -0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 1 0.5897 -2.5543 0.8652 11 6 2.2369 -3.6889 0.0005 12 6 1.5581 -4.7391 -0.9086 13 6 0.2515 -4.0556 -1.3534 14 6 -0.8968 -4.4774 -0.4433 15 6 -2.1841 -3.7765 -0.8852 16 6 -2.4956 -4.1519 -2.3354 17 6 -1.3451 -3.7035 -3.2391 18 6 -0.0549 -4.4042 -2.8057 19 8 0.4953 -2.6433 -1.2227 20 1 -0.4850 -0.8401 -0.0004 21 1 3.1985 -3.3882 -0.4153 22 1 2.3639 -4.0797 1.0101 23 1 2.1861 -4.9612 -1.7713 24 1 1.3444 -5.6491 -0.3481 25 1 -1.0316 -5.5572 -0.5055 26 1 -0.6664 -4.1989 0.5850 27 1 -2.0547 -2.6969 -0.8090 28 1 -3.0076 -4.0901 -0.2437 29 1 -3.4162 -3.6592 -2.6483 30 1 -2.6177 -5.2323 -2.4122 31 1 -1.2178 -2.6240 -3.1569 32 1 -1.5714 -3.9651 -4.2727 33 1 0.7681 -4.0743 -3.4397 34 1 -0.1776 -5.4830 -2.9022 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000229314002.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:16 Heat of formation + Delta-G solvation = -99.015807 kcal Electronic energy + Delta-G solvation = -15006.693531 eV Core-core repulsion = 12709.105685 eV Total energy + Delta-G solvation = -2297.587846 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.136 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.12472 -37.39029 -34.77047 -32.85682 -31.79943 -31.01913 -27.71795 -25.09168 -23.64732 -22.57322 -21.59501 -20.15115 -19.12237 -16.95613 -16.56360 -15.89205 -15.62084 -15.51091 -15.02966 -14.78169 -14.38833 -13.85677 -13.47901 -13.08334 -13.01748 -12.62776 -12.48597 -12.34340 -12.24649 -11.98165 -11.88669 -11.71490 -11.44907 -11.08459 -10.88052 -10.68119 -10.61925 -10.00270 -8.65186 -6.43160 1.49724 1.59944 1.77434 2.55107 3.06858 3.49467 3.76161 3.82501 4.03771 4.08504 4.17442 4.18625 4.38193 4.46122 4.60033 4.61364 4.64845 4.75976 4.83421 4.89099 4.98422 5.01544 5.04296 5.12839 5.29602 5.35179 5.36140 5.41434 5.51267 5.61752 5.97496 6.11392 6.52781 6.71696 7.48501 8.75565 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.037091 B = 0.011121 C = 0.009820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 754.716122 B = 2517.182081 C = 2850.693397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.022 4.022 3 Si 1.119 2.881 4 H -0.268 1.268 5 H -0.272 1.272 6 H -0.284 1.284 7 C -0.625 4.625 8 H 0.051 0.949 9 C 0.184 3.816 10 H -0.014 1.014 11 C -0.136 4.136 12 C -0.136 4.136 13 C 0.079 3.921 14 C -0.124 4.124 15 C -0.116 4.116 16 C -0.106 4.106 17 C -0.116 4.116 18 C -0.098 4.098 19 O -0.384 6.384 20 H 0.264 0.736 21 H 0.055 0.945 22 H 0.066 0.934 23 H 0.076 0.924 24 H 0.091 0.909 25 H 0.094 0.906 26 H 0.037 0.963 27 H 0.024 0.976 28 H 0.071 0.929 29 H 0.064 0.936 30 H 0.085 0.915 31 H 0.027 0.973 32 H 0.080 0.920 33 H 0.053 0.947 34 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.649 -10.919 -3.812 11.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.223 4.223 3 Si 0.940 3.060 4 H -0.194 1.194 5 H -0.197 1.197 6 H -0.209 1.209 7 C -0.662 4.662 8 H 0.070 0.930 9 C 0.128 3.872 10 H 0.004 0.996 11 C -0.174 4.174 12 C -0.173 4.173 13 C 0.040 3.960 14 C -0.162 4.162 15 C -0.153 4.153 16 C -0.144 4.144 17 C -0.154 4.154 18 C -0.135 4.135 19 O -0.304 6.304 20 H 0.074 0.926 21 H 0.073 0.927 22 H 0.084 0.916 23 H 0.095 0.905 24 H 0.109 0.891 25 H 0.112 0.888 26 H 0.056 0.944 27 H 0.043 0.957 28 H 0.089 0.911 29 H 0.083 0.917 30 H 0.104 0.896 31 H 0.046 0.954 32 H 0.099 0.901 33 H 0.072 0.928 34 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -1.911 -9.145 -3.952 10.144 hybrid contribution 0.264 -1.410 0.443 1.501 sum -1.647 -10.555 -3.509 11.244 Atomic orbital electron populations 1.70768 1.07887 1.30816 1.46033 1.27387 0.96668 1.06612 0.91633 0.82940 0.74112 0.71078 0.77876 1.19362 1.19683 1.20914 1.22387 0.94050 0.92705 1.57094 0.93033 1.20494 0.88368 0.94657 0.83672 0.99617 1.22829 0.99276 0.95759 0.99557 1.22914 0.96403 0.98280 0.99741 1.22162 0.94010 0.83499 0.96368 1.21852 0.95174 1.01077 0.98062 1.21430 0.97001 0.99073 0.97832 1.21463 0.97562 1.01925 0.93425 1.21462 0.95071 0.99112 0.99708 1.21462 0.97700 1.01243 0.93080 1.89324 1.74906 1.22352 1.43858 0.92559 0.92652 0.91564 0.90498 0.89081 0.88792 0.94432 0.95656 0.91073 0.91720 0.89595 0.95374 0.90097 0.92795 0.88314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -59.12 13.59 21.45 0.29 -58.83 16 2 C -0.02 -1.31 5.43 84.65 0.46 -0.85 16 3 Si 1.12 52.32 29.90 68.60 2.05 54.37 16 4 H -0.27 -11.62 7.11 99.48 0.71 -10.92 16 5 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 6 H -0.28 -13.16 7.11 99.48 0.71 -12.45 16 7 C -0.63 -37.40 8.77 25.60 0.22 -37.17 16 8 H 0.05 3.02 7.56 -2.91 -0.02 2.99 16 9 C 0.18 9.93 2.19 30.36 0.07 10.00 16 10 H -0.01 -0.80 7.08 -2.39 -0.02 -0.82 16 11 C -0.14 -5.88 6.62 31.65 0.21 -5.67 16 12 C -0.14 -4.73 6.16 31.48 0.19 -4.54 16 13 C 0.08 3.06 0.68 -10.80 -0.01 3.05 16 14 C -0.12 -4.31 4.64 30.45 0.14 -4.17 16 15 C -0.12 -4.02 5.82 30.63 0.18 -3.84 16 16 C -0.11 -3.02 5.91 30.60 0.18 -2.84 16 17 C -0.12 -3.70 5.82 30.63 0.18 -3.53 16 18 C -0.10 -3.12 4.84 30.45 0.15 -2.97 16 19 O -0.38 -20.14 8.90 -148.98 -1.33 -21.46 16 20 H 0.26 17.41 6.66 -92.71 -0.62 16.79 16 21 H 0.05 2.44 7.70 -2.39 -0.02 2.42 16 22 H 0.07 2.60 8.14 -2.39 -0.02 2.58 16 23 H 0.08 2.45 7.85 -2.39 -0.02 2.43 16 24 H 0.09 2.59 7.85 -2.39 -0.02 2.57 16 25 H 0.09 2.54 8.14 -2.39 -0.02 2.52 16 26 H 0.04 1.46 6.98 -2.39 -0.02 1.45 16 27 H 0.02 1.11 7.83 -2.39 -0.02 1.09 16 28 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 29 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 30 H 0.09 1.91 8.14 -2.39 -0.02 1.90 16 31 H 0.03 1.14 7.83 -2.39 -0.02 1.12 16 32 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 33 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 34 H 0.10 2.41 8.14 -2.39 -0.02 2.39 16 Total: -1.00 -70.04 263.06 4.19 -65.85 By element: Atomic # 1 Polarization: 11.39 SS G_CDS: 1.20 Total: 12.59 kcal Atomic # 6 Polarization: -54.49 SS G_CDS: 1.97 Total: -52.52 kcal Atomic # 7 Polarization: -59.12 SS G_CDS: 0.29 Total: -58.83 kcal Atomic # 8 Polarization: -20.14 SS G_CDS: -1.33 Total: -21.46 kcal Atomic # 14 Polarization: 52.32 SS G_CDS: 2.05 Total: 54.37 kcal Total: -70.04 4.19 -65.85 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000229314002.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.165 kcal (2) G-P(sol) polarization free energy of solvation -70.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.851 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds