Wall clock time and date at job start Mon Mar 30 2020 02:53:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86797 * 120.00312 * 2 1 4 4 H 1.48503 * 109.47215 * 270.00202 * 3 2 1 5 5 H 1.48505 * 109.47214 * 30.00154 * 3 2 1 6 6 H 1.48498 * 109.47078 * 149.99999 * 3 2 1 7 7 C 1.37885 * 119.99680 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99434 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99940 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.46688 * 179.97438 * 9 7 2 11 11 H 1.09002 * 110.53815 * 305.70125 * 10 9 7 12 12 C 1.55043 * 110.72700 * 182.77623 * 10 9 7 13 13 C 1.54953 * 102.10480 * 204.72265 * 12 10 9 14 14 C 1.53577 * 103.94755 * 20.86667 * 13 12 10 15 15 C 1.53736 * 110.18842 * 122.49808 * 14 13 12 16 16 C 1.55017 * 104.06262 * 96.85066 * 15 14 13 17 17 C 1.54930 * 102.81957 * 37.49167 * 16 15 14 18 18 C 1.53349 * 110.38948 * 240.65208 * 14 13 12 19 19 O 1.43126 * 107.94370 * 1.76648 * 14 13 12 20 20 H 0.97001 * 119.99503 * 359.97438 * 1 2 3 21 21 H 1.09001 * 109.46967 * 59.99730 * 9 7 2 22 22 H 1.08995 * 109.46968 * 299.99570 * 9 7 2 23 23 H 1.09000 * 110.90619 * 322.92884 * 12 10 9 24 24 H 1.09003 * 110.90043 * 86.52531 * 12 10 9 25 25 H 1.09000 * 110.53173 * 262.24989 * 13 12 10 26 26 H 1.09002 * 110.53132 * 139.48311 * 13 12 10 27 27 H 1.09003 * 110.50861 * 215.49381 * 15 14 13 28 28 H 1.08996 * 110.51410 * 338.20293 * 15 14 13 29 29 H 1.09005 * 110.74453 * 279.15667 * 16 15 14 30 30 H 1.09007 * 110.74388 * 155.82699 * 16 15 14 31 31 H 1.08997 * 110.48726 * 203.67611 * 17 16 15 32 32 H 1.09004 * 110.48616 * 81.03605 * 17 16 15 33 33 H 1.09002 * 110.07203 * 359.09519 * 18 14 13 34 34 H 1.08994 * 110.07466 * 120.63379 * 18 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6527 0.7001 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1942 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0005 11 1 2.9464 -3.5657 -0.8284 12 6 1.5009 -5.0204 -0.0697 13 6 2.5278 -5.9872 0.5721 14 6 3.4425 -5.0650 1.3915 15 6 3.4439 -5.4945 2.8676 16 6 4.7122 -6.3754 3.0024 17 6 5.7323 -5.6516 2.0881 18 6 4.8884 -5.1641 0.8904 19 8 2.9519 -3.7269 1.2596 20 1 -0.4849 0.8401 0.0004 21 1 0.6246 -2.5571 -0.8897 22 1 0.6240 -2.5567 0.8903 23 1 0.5795 -4.9896 0.5118 24 1 1.2975 -5.2994 -1.1036 25 1 3.0985 -6.5053 -0.1986 26 1 2.0246 -6.7027 1.2225 27 1 3.5131 -4.6231 3.5188 28 1 2.5500 -6.0742 3.0976 29 1 4.5203 -7.3862 2.6424 30 1 5.0628 -6.3922 4.0345 31 1 6.5040 -6.3449 1.7539 32 1 6.1787 -4.8051 2.6099 33 1 4.9522 -5.8807 0.0715 34 1 5.2378 -4.1859 0.5602 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000229382602.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:55 Heat of formation + Delta-G solvation = -72.307859 kcal Electronic energy + Delta-G solvation = -14368.414374 eV Core-core repulsion = 12071.984672 eV Total energy + Delta-G solvation = -2296.429702 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 210.136 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.73730 -35.98451 -32.96279 -31.47130 -30.00192 -28.60535 -26.85029 -24.02980 -21.88155 -20.87904 -19.71806 -19.15052 -16.39667 -15.82509 -15.46379 -14.86070 -14.49421 -13.91308 -13.20454 -13.03510 -12.68304 -12.16062 -11.90126 -11.41962 -11.28524 -11.08493 -10.97942 -10.94130 -10.87403 -10.56677 -10.41825 -10.38460 -10.08521 -9.98157 -9.39621 -8.98692 -8.67586 -8.30401 -5.93155 -3.93143 3.37374 3.43155 3.48754 4.46735 4.53750 4.75580 4.78687 5.16305 5.28126 5.31567 5.37579 5.44030 5.65049 5.76044 5.78157 5.87924 5.96244 5.99897 6.09759 6.13740 6.21941 6.25284 6.34018 6.41954 6.49197 6.60609 6.74501 6.90606 7.55377 7.72089 8.03975 8.06428 8.49446 9.11553 9.69238 11.18629 Molecular weight = 210.14amu Principal moments of inertia in cm(-1) A = 0.042245 B = 0.008112 C = 0.007343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 662.636188 B = 3450.970268 C = 3812.179933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.054 3.946 3 Si 0.892 3.108 4 H -0.282 1.282 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.507 4.507 8 H 0.057 0.943 9 C 0.027 3.973 10 C 0.086 3.914 11 H 0.054 0.946 12 C -0.154 4.154 13 C -0.142 4.142 14 C 0.094 3.906 15 C -0.116 4.116 16 C -0.123 4.123 17 C -0.121 4.121 18 C -0.138 4.138 19 O -0.346 6.346 20 H 0.259 0.741 21 H 0.030 0.970 22 H 0.025 0.975 23 H 0.073 0.927 24 H 0.069 0.931 25 H 0.067 0.933 26 H 0.069 0.931 27 H 0.076 0.924 28 H 0.067 0.933 29 H 0.064 0.936 30 H 0.064 0.936 31 H 0.060 0.940 32 H 0.065 0.935 33 H 0.063 0.937 34 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.358 -12.886 2.658 15.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.146 4.146 3 Si 0.720 3.280 4 H -0.208 1.208 5 H -0.213 1.213 6 H -0.198 1.198 7 C -0.546 4.546 8 H 0.075 0.925 9 C -0.010 4.010 10 C 0.029 3.971 11 H 0.072 0.928 12 C -0.192 4.192 13 C -0.180 4.180 14 C 0.054 3.946 15 C -0.153 4.153 16 C -0.160 4.160 17 C -0.159 4.159 18 C -0.176 4.176 19 O -0.265 6.265 20 H 0.069 0.931 21 H 0.048 0.952 22 H 0.043 0.957 23 H 0.091 0.909 24 H 0.088 0.912 25 H 0.086 0.914 26 H 0.088 0.912 27 H 0.095 0.905 28 H 0.086 0.914 29 H 0.083 0.917 30 H 0.083 0.917 31 H 0.079 0.921 32 H 0.084 0.916 33 H 0.082 0.918 34 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 7.236 -12.588 2.808 14.788 hybrid contribution 0.386 0.775 -0.214 0.892 sum 7.622 -11.813 2.593 14.296 Atomic orbital electron populations 1.69962 1.06018 1.26495 1.51514 1.25005 0.94839 0.99206 0.95572 0.86586 0.79955 0.83479 0.77963 1.20779 1.21288 1.19846 1.21179 0.93155 0.90667 1.49556 0.92495 1.19179 0.93167 0.90812 0.97874 1.23429 0.93281 0.95003 0.85357 0.92808 1.23279 0.99022 0.96213 1.00691 1.23071 0.97592 0.98104 0.99224 1.22245 0.92750 0.84791 0.94835 1.22447 0.97610 0.99552 0.95724 1.22480 0.95608 0.98533 0.99426 1.22334 0.97383 0.99670 0.96521 1.22679 0.95312 1.01980 0.97653 1.89011 1.72321 1.25623 1.39540 0.93102 0.95235 0.95655 0.90873 0.91212 0.91406 0.91249 0.90489 0.91436 0.91746 0.91692 0.92119 0.91578 0.91817 0.90698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.66 13.29 55.43 0.74 -26.93 16 2 C 0.05 1.60 5.46 -17.82 -0.10 1.50 16 3 Si 0.89 22.43 29.54 -169.99 -5.02 17.41 16 4 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 5 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 6 H -0.27 -6.81 7.11 56.52 0.40 -6.41 16 7 C -0.51 -14.94 8.99 -34.44 -0.31 -15.25 16 8 H 0.06 1.67 7.74 -52.49 -0.41 1.26 16 9 C 0.03 0.71 4.75 -27.88 -0.13 0.58 16 10 C 0.09 1.90 3.24 -25.65 -0.08 1.81 16 11 H 0.05 1.18 8.14 -51.93 -0.42 0.75 16 12 C -0.15 -2.72 6.60 -24.62 -0.16 -2.89 16 13 C -0.14 -2.14 6.29 -25.40 -0.16 -2.30 16 14 C 0.09 1.58 1.06 -89.76 -0.10 1.48 16 15 C -0.12 -1.69 6.09 -25.28 -0.15 -1.85 16 16 C -0.12 -1.44 6.91 -24.65 -0.17 -1.61 16 17 C -0.12 -1.50 6.84 -24.97 -0.17 -1.67 16 18 C -0.14 -2.05 6.28 -25.81 -0.16 -2.21 16 19 O -0.35 -7.66 10.35 -35.23 -0.36 -8.02 16 20 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 21 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 22 H 0.03 0.73 8.14 -51.93 -0.42 0.30 16 23 H 0.07 1.32 8.06 -51.93 -0.42 0.90 16 24 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 25 H 0.07 0.90 7.11 -51.93 -0.37 0.53 16 26 H 0.07 0.93 7.26 -51.93 -0.38 0.55 16 27 H 0.08 1.23 8.09 -51.93 -0.42 0.81 16 28 H 0.07 0.91 7.35 -51.93 -0.38 0.53 16 29 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 30 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 32 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 33 H 0.06 0.84 7.09 -51.93 -0.37 0.47 16 34 H 0.07 1.24 7.97 -51.93 -0.41 0.83 16 LS Contribution 271.13 15.07 4.09 4.09 Total: -1.00 -31.23 271.13 -7.93 -39.16 By element: Atomic # 1 Polarization: 2.36 SS G_CDS: -5.67 Total: -3.31 kcal Atomic # 6 Polarization: -20.70 SS G_CDS: -1.70 Total: -22.40 kcal Atomic # 7 Polarization: -27.66 SS G_CDS: 0.74 Total: -26.93 kcal Atomic # 8 Polarization: -7.66 SS G_CDS: -0.36 Total: -8.02 kcal Atomic # 14 Polarization: 22.43 SS G_CDS: -5.02 Total: 17.41 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -31.23 -7.93 -39.16 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000229382602.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.151 kcal (2) G-P(sol) polarization free energy of solvation -31.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.157 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds