Wall clock time and date at job start Mon Mar 30 2020 02:12:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 109.47506 * 2 1 4 4 C 1.52996 * 109.47292 * 120.00575 * 2 1 3 5 5 C 1.53002 * 109.47340 * 64.99459 * 4 2 1 6 6 C 1.50706 * 109.46925 * 180.02562 * 5 4 2 7 7 N 1.30450 * 126.07274 * 90.02970 * 6 5 4 8 8 O 1.21273 * 110.68586 * 179.97438 * 7 6 5 9 9 C 1.34757 * 109.53374 * 0.02562 * 8 7 6 10 10 C 1.40340 * 126.79168 * 179.97438 * 9 8 7 11 11 H 1.07999 * 119.99645 * 179.97438 * 10 9 8 12 12 C 1.40458 * 120.00464 * 359.97438 * 10 9 8 13 13 N 1.30510 * 119.99849 * 359.97438 * 12 10 9 14 14 Si 1.86792 * 120.00164 * 179.97438 * 12 10 9 15 15 H 1.48508 * 109.47164 * 59.99592 * 14 12 10 16 16 H 1.48502 * 109.47236 * 179.97438 * 14 12 10 17 17 H 1.48504 * 109.47355 * 299.99794 * 14 12 10 18 18 N 1.33330 * 106.40929 * 359.73801 * 9 8 7 19 19 H 1.09000 * 109.47145 * 299.99710 * 1 2 3 20 20 H 1.09002 * 109.47139 * 59.99820 * 1 2 3 21 21 H 1.08997 * 109.47474 * 179.97438 * 1 2 3 22 22 H 1.09006 * 109.46822 * 239.99976 * 2 1 3 23 23 H 1.08998 * 109.47407 * 179.97438 * 3 2 1 24 24 H 1.09002 * 109.47069 * 300.00223 * 3 2 1 25 25 H 1.09000 * 109.46682 * 60.00006 * 3 2 1 26 26 H 1.09004 * 109.46785 * 304.99767 * 4 2 1 27 27 H 1.09004 * 109.47694 * 184.99866 * 4 2 1 28 28 H 1.09000 * 109.46497 * 60.00561 * 5 4 2 29 29 H 1.09000 * 109.47312 * 300.00340 * 5 4 2 30 30 H 0.96995 * 120.00153 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 1.2491 5 6 1.6352 -2.1956 1.1878 6 6 2.1370 -2.9059 2.4186 7 7 1.4915 -3.0417 3.5440 8 8 2.1558 -3.6622 4.3467 9 6 3.3372 -3.9964 3.7914 10 6 4.3779 -4.7158 4.3988 11 1 5.2834 -4.9240 3.8482 12 6 4.2420 -5.1650 5.7226 13 7 3.1479 -4.9129 6.3881 14 14 5.6269 -6.1231 6.5308 15 1 6.8551 -5.2887 6.5594 16 1 5.2383 -6.4788 7.9192 17 1 5.8887 -7.3629 5.7565 18 7 3.3196 -3.5129 2.5490 19 1 -0.3633 0.5138 0.8900 20 1 -0.3633 0.5139 -0.8900 21 1 -0.3634 -1.0276 -0.0005 22 1 1.8933 -0.5139 -0.8900 23 1 3.1300 1.4425 0.0005 24 1 1.6767 1.9563 -0.8900 25 1 1.6767 1.9563 0.8900 26 1 1.6054 -0.2618 2.1369 27 1 3.1263 -0.6445 1.2951 28 1 2.0698 -2.6550 0.3001 29 1 0.5488 -2.2725 1.1419 30 1 3.0541 -5.2228 7.3024 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000232620809.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:06 Heat of formation + Delta-G solvation = 15.871144 kcal Electronic energy + Delta-G solvation = -13515.221091 eV Core-core repulsion = 11119.074774 eV Total energy + Delta-G solvation = -2396.146317 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.111 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -42.95161 -36.82078 -34.07591 -33.73012 -31.14865 -29.16069 -27.05753 -26.44087 -23.96957 -21.51158 -20.42496 -19.71393 -17.52997 -15.74429 -15.41552 -15.17639 -14.76917 -14.10947 -13.78486 -13.30536 -12.84803 -12.28434 -12.11000 -11.70756 -11.57548 -11.50778 -11.42869 -11.06379 -10.69490 -10.55826 -10.38070 -10.23254 -9.97328 -9.87268 -9.38031 -8.84365 -8.19370 -7.05274 -4.98635 2.83327 2.97236 3.01265 3.33476 3.75554 3.95733 4.91951 5.04820 5.06734 5.14273 5.35191 5.52131 5.58927 5.69749 5.83176 5.88694 5.95312 6.02992 6.08918 6.21074 6.29107 6.38930 6.48545 6.69739 6.82416 6.88366 7.50440 7.93679 8.15796 8.37229 8.51043 9.94219 10.45519 Molecular weight = 210.11amu Principal moments of inertia in cm(-1) A = 0.074779 B = 0.006204 C = 0.006003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 374.345352 B = 4512.111413 C = 4663.234465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.096 4.096 3 C -0.146 4.146 4 C -0.105 4.105 5 C -0.015 4.015 6 C 0.160 3.840 7 N -0.474 5.474 8 O 0.044 5.956 9 C 0.301 3.699 10 C -0.418 4.418 11 H 0.111 0.889 12 C 0.071 3.929 13 N -0.766 5.766 14 Si 0.936 3.064 15 H -0.260 1.260 16 H -0.274 1.274 17 H -0.260 1.260 18 N -0.615 5.615 19 H 0.054 0.946 20 H 0.049 0.951 21 H 0.058 0.942 22 H 0.069 0.931 23 H 0.054 0.946 24 H 0.050 0.950 25 H 0.053 0.947 26 H 0.061 0.939 27 H 0.065 0.935 28 H 0.076 0.924 29 H 0.073 0.927 30 H 0.292 0.708 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.740 5.085 -5.546 7.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.115 4.115 3 C -0.203 4.203 4 C -0.144 4.144 5 C -0.054 4.054 6 C -0.115 4.115 7 N -0.204 5.204 8 O -0.003 6.003 9 C 0.110 3.890 10 C -0.456 4.456 11 H 0.129 0.871 12 C -0.154 4.154 13 N -0.393 5.393 14 Si 0.759 3.241 15 H -0.184 1.184 16 H -0.199 1.199 17 H -0.184 1.184 18 N -0.359 5.359 19 H 0.073 0.927 20 H 0.068 0.932 21 H 0.077 0.923 22 H 0.088 0.912 23 H 0.073 0.927 24 H 0.070 0.930 25 H 0.072 0.928 26 H 0.080 0.920 27 H 0.084 0.916 28 H 0.094 0.906 29 H 0.091 0.909 30 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -1.457 5.422 -5.590 7.923 hybrid contribution 0.645 -0.549 0.620 1.049 sum -0.813 4.873 -4.970 7.007 Atomic orbital electron populations 1.21898 0.95484 1.01986 1.01255 1.21124 0.95762 0.95982 0.98587 1.21828 1.00994 0.96167 1.01317 1.21560 1.01313 0.94141 0.97345 1.19663 0.99941 0.93622 0.92205 1.24972 0.90495 1.00226 0.95760 1.74297 1.22167 1.21272 1.02615 1.85521 1.24446 1.54975 1.35345 1.24240 0.86926 0.91997 0.85837 1.18518 1.00067 1.30016 0.96979 0.87073 1.26191 0.97361 0.94905 0.96937 1.69632 1.25062 1.33235 1.11368 0.85892 0.80121 0.80020 0.78054 1.18389 1.19873 1.18379 1.72224 1.20640 1.25854 1.17180 0.92732 0.93192 0.92294 0.91216 0.92727 0.93042 0.92819 0.92000 0.91619 0.90581 0.90865 0.89678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.80 8.95 37.16 0.33 -1.46 16 2 C -0.10 -1.25 2.92 -90.62 -0.26 -1.52 16 3 C -0.15 -1.68 9.19 37.16 0.34 -1.34 16 4 C -0.10 -1.78 4.66 -26.73 -0.12 -1.90 16 5 C -0.02 -0.30 5.60 -27.88 -0.16 -0.45 16 6 C 0.16 4.12 7.43 -156.78 -1.17 2.95 16 7 N -0.47 -13.32 12.15 31.51 0.38 -12.93 16 8 O 0.04 1.30 9.74 15.12 0.15 1.45 16 9 C 0.30 8.79 7.82 -16.35 -0.13 8.67 16 10 C -0.42 -11.27 9.48 -37.96 -0.36 -11.63 16 11 H 0.11 2.81 7.85 -52.49 -0.41 2.40 16 12 C 0.07 1.74 5.50 -17.28 -0.10 1.65 16 13 N -0.77 -19.85 12.06 55.57 0.67 -19.18 16 14 Si 0.94 17.80 29.56 -169.99 -5.03 12.78 16 15 H -0.26 -4.84 7.11 56.52 0.40 -4.43 16 16 H -0.27 -5.01 7.11 56.52 0.40 -4.61 16 17 H -0.26 -4.83 7.11 56.52 0.40 -4.43 16 18 N -0.61 -17.31 11.61 -11.51 -0.13 -17.44 16 19 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 20 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 21 H 0.06 0.73 6.57 -51.93 -0.34 0.39 16 22 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 23 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 24 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 25 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 26 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 27 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 28 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 29 H 0.07 1.32 6.57 -51.93 -0.34 0.98 16 30 H 0.29 6.70 8.29 -40.82 -0.34 6.37 16 LS Contribution 260.55 15.07 3.93 3.93 Total: -1.00 -30.42 260.55 -5.68 -36.10 By element: Atomic # 1 Polarization: 4.37 SS G_CDS: -4.03 Total: 0.34 kcal Atomic # 6 Polarization: -3.42 SS G_CDS: -1.62 Total: -5.04 kcal Atomic # 7 Polarization: -50.47 SS G_CDS: 0.92 Total: -49.55 kcal Atomic # 8 Polarization: 1.30 SS G_CDS: 0.15 Total: 1.45 kcal Atomic # 14 Polarization: 17.80 SS G_CDS: -5.03 Total: 12.78 kcal Total LS contribution 3.93 Total: 3.93 kcal Total: -30.42 -5.68 -36.10 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000232620809.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.972 kcal (2) G-P(sol) polarization free energy of solvation -30.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.101 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds