Wall clock time and date at job start Mon Mar 30 2020 02:12:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 109.47506 * 2 1 4 4 C 1.52996 * 109.47292 * 120.00575 * 2 1 3 5 5 C 1.53002 * 109.47340 * 64.99459 * 4 2 1 6 6 C 1.50706 * 109.46925 * 180.02562 * 5 4 2 7 7 N 1.30450 * 126.07274 * 90.02970 * 6 5 4 8 8 O 1.21273 * 110.68586 * 179.97438 * 7 6 5 9 9 C 1.34757 * 109.53374 * 0.02562 * 8 7 6 10 10 C 1.40340 * 126.79168 * 179.97438 * 9 8 7 11 11 H 1.07999 * 119.99645 * 179.97438 * 10 9 8 12 12 C 1.40458 * 120.00464 * 359.97438 * 10 9 8 13 13 N 1.30510 * 119.99849 * 359.97438 * 12 10 9 14 14 Si 1.86792 * 120.00164 * 179.97438 * 12 10 9 15 15 H 1.48508 * 109.47164 * 59.99592 * 14 12 10 16 16 H 1.48502 * 109.47236 * 179.97438 * 14 12 10 17 17 H 1.48504 * 109.47355 * 299.99794 * 14 12 10 18 18 N 1.33330 * 106.40929 * 359.73801 * 9 8 7 19 19 H 1.09000 * 109.47145 * 299.99710 * 1 2 3 20 20 H 1.09002 * 109.47139 * 59.99820 * 1 2 3 21 21 H 1.08997 * 109.47474 * 179.97438 * 1 2 3 22 22 H 1.09006 * 109.46822 * 239.99976 * 2 1 3 23 23 H 1.08998 * 109.47407 * 179.97438 * 3 2 1 24 24 H 1.09002 * 109.47069 * 300.00223 * 3 2 1 25 25 H 1.09000 * 109.46682 * 60.00006 * 3 2 1 26 26 H 1.09004 * 109.46785 * 304.99767 * 4 2 1 27 27 H 1.09004 * 109.47694 * 184.99866 * 4 2 1 28 28 H 1.09000 * 109.46497 * 60.00561 * 5 4 2 29 29 H 1.09000 * 109.47312 * 300.00340 * 5 4 2 30 30 H 0.96995 * 120.00153 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 1.2491 5 6 1.6352 -2.1956 1.1878 6 6 2.1370 -2.9059 2.4186 7 7 1.4915 -3.0417 3.5440 8 8 2.1558 -3.6622 4.3467 9 6 3.3372 -3.9964 3.7914 10 6 4.3779 -4.7158 4.3988 11 1 5.2834 -4.9240 3.8482 12 6 4.2420 -5.1650 5.7226 13 7 3.1479 -4.9129 6.3881 14 14 5.6269 -6.1231 6.5308 15 1 6.8551 -5.2887 6.5594 16 1 5.2383 -6.4788 7.9192 17 1 5.8887 -7.3629 5.7565 18 7 3.3196 -3.5129 2.5490 19 1 -0.3633 0.5138 0.8900 20 1 -0.3633 0.5139 -0.8900 21 1 -0.3634 -1.0276 -0.0005 22 1 1.8933 -0.5139 -0.8900 23 1 3.1300 1.4425 0.0005 24 1 1.6767 1.9563 -0.8900 25 1 1.6767 1.9563 0.8900 26 1 1.6054 -0.2618 2.1369 27 1 3.1263 -0.6445 1.2951 28 1 2.0698 -2.6550 0.3001 29 1 0.5488 -2.2725 1.1419 30 1 3.0541 -5.2228 7.3024 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000232620809.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:06 Heat of formation + Delta-G solvation = -4.556804 kcal Electronic energy + Delta-G solvation = -13516.106913 eV Core-core repulsion = 11119.074774 eV Total energy + Delta-G solvation = -2397.032139 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.111 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -45.03648 -38.08725 -36.07713 -35.62917 -33.00008 -30.86275 -28.51667 -27.99636 -25.48501 -23.59682 -22.32705 -20.86329 -19.50046 -17.85042 -17.36733 -16.87768 -16.17267 -15.54086 -15.15286 -14.75153 -14.32421 -13.75453 -13.57335 -13.25570 -13.14834 -13.07237 -12.76449 -12.36324 -12.13359 -12.00740 -11.94944 -11.67913 -11.52291 -11.47920 -11.22484 -10.97177 -10.26705 -8.96105 -7.10809 0.99438 1.40402 1.56603 1.59142 2.03087 2.15198 3.00918 3.24523 3.50519 3.85330 3.99436 4.09835 4.14233 4.50379 4.57230 4.66220 4.78583 4.85148 4.92633 5.00061 5.05866 5.14028 5.16376 5.29465 5.45435 5.52091 5.58678 5.86675 6.07708 6.30146 6.44340 8.06248 8.31957 Molecular weight = 210.11amu Principal moments of inertia in cm(-1) A = 0.074779 B = 0.006204 C = 0.006003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 374.345352 B = 4512.111413 C = 4663.234465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.089 4.089 3 C -0.144 4.144 4 C -0.096 4.096 5 C -0.014 4.014 6 C 0.167 3.833 7 N -0.502 5.502 8 O 0.008 5.992 9 C 0.268 3.732 10 C -0.436 4.436 11 H 0.122 0.878 12 C 0.028 3.972 13 N -0.797 5.797 14 Si 1.024 2.976 15 H -0.250 1.250 16 H -0.259 1.259 17 H -0.250 1.250 18 N -0.641 5.641 19 H 0.048 0.952 20 H 0.073 0.927 21 H 0.053 0.947 22 H 0.081 0.919 23 H 0.052 0.948 24 H 0.073 0.927 25 H 0.049 0.951 26 H 0.045 0.955 27 H 0.049 0.951 28 H 0.090 0.910 29 H 0.089 0.911 30 H 0.306 0.694 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.112 4.944 -5.914 7.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.108 4.108 3 C -0.201 4.201 4 C -0.135 4.135 5 C -0.053 4.053 6 C -0.107 4.107 7 N -0.237 5.237 8 O -0.032 6.032 9 C 0.079 3.921 10 C -0.473 4.473 11 H 0.140 0.860 12 C -0.194 4.194 13 N -0.424 5.424 14 Si 0.840 3.160 15 H -0.174 1.174 16 H -0.183 1.183 17 H -0.173 1.173 18 N -0.386 5.386 19 H 0.067 0.933 20 H 0.092 0.908 21 H 0.072 0.928 22 H 0.099 0.901 23 H 0.071 0.929 24 H 0.092 0.908 25 H 0.068 0.932 26 H 0.064 0.936 27 H 0.068 0.932 28 H 0.109 0.891 29 H 0.107 0.893 30 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -0.612 5.279 -5.942 7.972 hybrid contribution 0.367 -0.508 0.744 0.973 sum -0.245 4.771 -5.198 7.060 Atomic orbital electron populations 1.21899 0.94495 1.01978 1.02195 1.21093 0.96529 0.96551 0.96598 1.21817 1.00914 0.95116 1.02296 1.21497 1.00274 0.92713 0.99020 1.19951 1.00848 0.94613 0.89875 1.25982 0.89476 0.98499 0.96764 1.74234 1.22910 1.23072 1.03526 1.85457 1.25022 1.56401 1.36349 1.24887 0.87555 0.93002 0.86645 1.19121 0.99920 1.29716 0.98503 0.86017 1.27428 1.00348 0.95191 0.96419 1.69694 1.27227 1.33135 1.12379 0.84641 0.75882 0.78255 0.77255 1.17370 1.18265 1.17335 1.72219 1.21965 1.27264 1.17174 0.93278 0.90804 0.92793 0.90051 0.92931 0.90755 0.93160 0.93592 0.93185 0.89139 0.89298 0.88240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.26 8.95 71.98 0.64 -2.62 16 2 C -0.09 -2.17 2.92 -10.80 -0.03 -2.20 16 3 C -0.14 -3.02 9.19 71.98 0.66 -2.36 16 4 C -0.10 -3.23 4.66 30.59 0.14 -3.09 16 5 C -0.01 -0.54 5.60 29.85 0.17 -0.38 16 6 C 0.17 8.83 7.43 138.61 1.03 9.86 16 7 N -0.50 -29.18 12.15 -56.64 -0.69 -29.87 16 8 O 0.01 0.52 9.74 64.19 0.63 1.15 16 9 C 0.27 16.13 7.82 85.06 0.66 16.79 16 10 C -0.44 -23.76 9.48 23.32 0.22 -23.54 16 11 H 0.12 6.17 7.85 -2.91 -0.02 6.15 16 12 C 0.03 1.36 5.50 85.43 0.47 1.83 16 13 N -0.80 -41.52 12.06 21.91 0.26 -41.25 16 14 Si 1.02 34.98 29.56 68.60 2.03 37.00 16 15 H -0.25 -8.16 7.11 99.48 0.71 -7.45 16 16 H -0.26 -8.17 7.11 99.48 0.71 -7.46 16 17 H -0.25 -8.14 7.11 99.48 0.71 -7.43 16 18 N -0.64 -37.04 11.61 -305.23 -3.54 -40.58 16 19 H 0.05 1.12 8.14 -2.39 -0.02 1.11 16 20 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 21 H 0.05 1.23 6.57 -2.39 -0.02 1.21 16 22 H 0.08 1.82 8.14 -2.38 -0.02 1.80 16 23 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 24 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 25 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 26 H 0.05 1.67 8.14 -2.38 -0.02 1.65 16 27 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 28 H 0.09 3.22 8.14 -2.39 -0.02 3.20 16 29 H 0.09 3.15 6.57 -2.39 -0.02 3.13 16 30 H 0.31 13.89 8.29 -92.71 -0.77 13.13 16 Total: -1.00 -67.56 260.55 3.78 -63.78 By element: Atomic # 1 Polarization: 14.34 SS G_CDS: 1.12 Total: 15.47 kcal Atomic # 6 Polarization: -9.66 SS G_CDS: 3.97 Total: -5.69 kcal Atomic # 7 Polarization: -107.74 SS G_CDS: -3.97 Total: -111.71 kcal Atomic # 8 Polarization: 0.52 SS G_CDS: 0.63 Total: 1.15 kcal Atomic # 14 Polarization: 34.98 SS G_CDS: 2.03 Total: 37.00 kcal Total: -67.56 3.78 -63.78 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000232620809.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.224 kcal (2) G-P(sol) polarization free energy of solvation -67.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.781 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds