Wall clock time and date at job start Mon Mar 30 2020 02:19:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.47244 * 2 1 4 4 N 1.46495 * 109.47042 * 180.02562 * 3 2 1 5 5 C 1.34954 * 126.03992 * 124.99983 * 4 3 2 6 6 C 1.35312 * 107.74582 * 180.02562 * 5 4 3 7 7 C 1.50706 * 126.03556 * 179.97438 * 6 5 4 8 8 H 1.08993 * 109.46894 * 25.00223 * 7 6 5 9 9 O 1.42906 * 109.46702 * 145.00574 * 7 6 5 10 10 C 1.50698 * 109.47294 * 265.00035 * 7 6 5 11 11 H 1.08005 * 119.99819 * 0.02562 * 10 7 6 12 12 C 1.37875 * 120.00046 * 179.97438 * 10 7 6 13 13 N 1.31511 * 120.00192 * 0.02562 * 12 10 7 14 14 Si 1.86798 * 119.99979 * 180.02562 * 12 10 7 15 15 H 1.48506 * 109.47297 * 180.02562 * 14 12 10 16 16 H 1.48503 * 109.47261 * 60.00310 * 14 12 10 17 17 H 1.48500 * 109.47454 * 300.00304 * 14 12 10 18 18 C 1.39864 * 107.92463 * 0.26442 * 6 5 4 19 19 N 1.30847 * 108.20107 * 359.55413 * 18 6 5 20 20 H 1.08994 * 109.47121 * 60.00083 * 1 2 3 21 21 H 1.08997 * 109.47123 * 180.02562 * 1 2 3 22 22 H 1.09001 * 109.46712 * 300.00325 * 1 2 3 23 23 H 1.08995 * 109.47084 * 239.99465 * 2 1 3 24 24 H 1.09005 * 109.46721 * 119.99670 * 2 1 3 25 25 H 1.09005 * 109.47110 * 59.99990 * 3 2 1 26 26 H 1.09002 * 109.46711 * 299.99951 * 3 2 1 27 27 H 1.08003 * 126.12362 * 359.97438 * 5 4 3 28 28 H 0.96696 * 113.99911 * 59.99830 * 9 7 6 29 29 H 0.97001 * 119.99934 * 359.97438 * 13 12 10 30 30 H 1.08002 * 125.90262 * 179.73128 * 18 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5050 1.4424 -0.0006 5 6 4.2987 2.0684 -0.8948 6 6 5.5835 1.8242 -0.5477 7 6 6.8076 2.3277 -1.2685 8 1 6.5596 3.2391 -1.8125 9 8 7.8389 2.6052 -0.3190 10 6 7.2867 1.2784 -2.2382 11 1 6.7575 0.3409 -2.3243 12 6 8.4000 1.5157 -3.0162 13 7 9.0440 2.6576 -2.9117 14 14 8.9935 0.2153 -4.2187 15 1 10.1997 0.7114 -4.9289 16 1 7.9214 -0.0730 -5.2051 17 1 9.3316 -1.0266 -3.4780 18 6 5.5750 1.0165 0.5941 19 7 4.3295 0.7920 0.9265 20 1 -0.3633 0.5138 -0.8899 21 1 -0.3633 -1.0276 0.0005 22 1 -0.3633 0.5139 0.8900 23 1 1.8934 -0.5139 -0.8899 24 1 1.8933 -0.5138 0.8901 25 1 1.6767 1.9563 0.8900 26 1 1.6767 1.9562 -0.8900 27 1 3.9675 2.6579 -1.7369 28 1 8.1104 1.8375 0.2024 29 1 8.7356 3.3330 -2.2875 30 1 6.4459 0.6449 1.1135 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000233367629.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:44 Heat of formation + Delta-G solvation = 9.383517 kcal Electronic energy + Delta-G solvation = -13590.467917 eV Core-core repulsion = 11194.040275 eV Total energy + Delta-G solvation = -2396.427642 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.111 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.57458 -36.06250 -34.97388 -32.07612 -31.12758 -29.93392 -26.70240 -25.20582 -22.53245 -22.10081 -20.22111 -19.45134 -17.18830 -16.74911 -15.51586 -14.76151 -14.39976 -13.95674 -13.72482 -13.38626 -12.99590 -12.77165 -12.35912 -12.04882 -11.83052 -11.77164 -11.43254 -10.95521 -10.75635 -10.43909 -10.08909 -9.99882 -9.35305 -8.82179 -8.47870 -8.26062 -7.46455 -6.28514 -4.12552 2.46587 2.98539 3.44669 3.46261 3.58349 3.66050 4.56374 4.60373 4.80595 5.03443 5.20339 5.33081 5.38492 5.48447 5.52486 5.62587 5.82010 5.95571 6.10666 6.12336 6.31177 6.40590 6.72236 7.25845 7.54833 7.61739 8.07241 8.29656 8.43802 8.91479 9.15781 9.71822 11.09260 Molecular weight = 210.11amu Principal moments of inertia in cm(-1) A = 0.042052 B = 0.007482 C = 0.006811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 665.675188 B = 3741.451836 C = 4109.803392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.137 4.137 3 C 0.140 3.860 4 N -0.385 5.385 5 C 0.033 3.967 6 C -0.208 4.208 7 C 0.277 3.723 8 H 0.053 0.947 9 O -0.578 6.578 10 C -0.635 4.635 11 H 0.048 0.952 12 C 0.033 3.967 13 N -0.895 5.895 14 Si 1.066 2.934 15 H -0.282 1.282 16 H -0.289 1.289 17 H -0.288 1.288 18 C 0.053 3.947 19 N -0.311 5.311 20 H 0.056 0.944 21 H 0.059 0.941 22 H 0.056 0.944 23 H 0.067 0.933 24 H 0.075 0.925 25 H 0.075 0.925 26 H 0.089 0.911 27 H 0.165 0.835 28 H 0.354 0.646 29 H 0.284 0.716 30 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.336 -3.151 4.182 14.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.175 4.175 3 C 0.018 3.982 4 N -0.170 5.170 5 C -0.110 4.110 6 C -0.219 4.219 7 C 0.219 3.781 8 H 0.071 0.929 9 O -0.382 6.382 10 C -0.673 4.673 11 H 0.066 0.934 12 C -0.175 4.175 13 N -0.530 5.530 14 Si 0.895 3.105 15 H -0.208 1.208 16 H -0.216 1.216 17 H -0.215 1.215 18 C -0.133 4.133 19 N -0.133 5.133 20 H 0.075 0.925 21 H 0.078 0.922 22 H 0.075 0.925 23 H 0.086 0.914 24 H 0.094 0.906 25 H 0.094 0.906 26 H 0.107 0.893 27 H 0.182 0.818 28 H 0.199 0.801 29 H 0.095 0.905 30 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -13.173 -3.405 3.618 14.079 hybrid contribution -0.743 0.067 0.656 0.993 sum -13.916 -3.338 4.274 14.935 Atomic orbital electron populations 1.21710 0.94892 1.02170 1.01883 1.21806 0.95856 0.96086 1.03731 1.21583 0.75353 0.98275 1.02942 1.48441 1.05487 1.41097 1.21960 1.22164 0.91017 1.01265 0.96592 1.21415 0.96334 1.04815 0.99385 1.17938 0.79800 0.95331 0.85045 0.92910 1.86481 1.58102 1.38747 1.54919 1.22405 1.16128 1.03517 1.25292 0.93357 1.25787 0.93582 1.00030 0.98093 1.70639 1.39948 1.06184 1.36200 0.83607 0.76254 0.74808 0.75873 1.20770 1.21586 1.21450 1.23567 0.94578 0.98187 0.96985 1.77111 1.01728 1.20037 1.14395 0.92539 0.92209 0.92498 0.91440 0.90586 0.90628 0.89283 0.81801 0.80127 0.90459 0.80798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.25 9.91 37.16 0.37 -0.88 16 2 C -0.14 -1.58 6.12 -26.73 -0.16 -1.74 16 3 C 0.14 1.76 6.51 -4.05 -0.03 1.73 16 4 N -0.39 -6.78 3.68 -61.37 -0.23 -7.00 16 5 C 0.03 0.64 11.36 -17.22 -0.20 0.44 16 6 C -0.21 -4.63 5.09 -105.05 -0.53 -5.16 16 7 C 0.28 7.10 2.88 -29.03 -0.08 7.02 16 8 H 0.05 1.44 8.01 -51.93 -0.42 1.02 16 9 O -0.58 -14.72 11.91 -35.23 -0.42 -15.14 16 10 C -0.64 -17.79 8.74 -34.44 -0.30 -18.09 16 11 H 0.05 1.37 7.74 -52.48 -0.41 0.97 16 12 C 0.03 0.95 5.40 -17.82 -0.10 0.86 16 13 N -0.89 -27.22 13.53 55.43 0.75 -26.47 16 14 Si 1.07 25.14 29.90 -169.99 -5.08 20.06 16 15 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 16 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 17 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 18 C 0.05 1.08 11.40 -17.36 -0.20 0.88 16 19 N -0.31 -6.10 12.42 30.63 0.38 -5.72 16 20 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 21 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 22 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 23 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 24 H 0.08 0.99 8.14 -51.93 -0.42 0.56 16 25 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 26 H 0.09 0.91 8.07 -51.93 -0.42 0.49 16 27 H 0.16 2.74 8.06 -52.48 -0.42 2.32 16 28 H 0.35 7.98 8.24 45.56 0.38 8.36 16 29 H 0.28 8.76 6.47 -40.82 -0.26 8.50 16 30 H 0.18 3.17 7.65 -52.49 -0.40 2.77 16 LS Contribution 263.26 15.07 3.97 3.97 Total: -1.00 -32.72 263.26 -5.15 -37.87 By element: Atomic # 1 Polarization: 10.68 SS G_CDS: -3.29 Total: 7.39 kcal Atomic # 6 Polarization: -13.71 SS G_CDS: -1.23 Total: -14.94 kcal Atomic # 7 Polarization: -40.10 SS G_CDS: 0.90 Total: -39.20 kcal Atomic # 8 Polarization: -14.72 SS G_CDS: -0.42 Total: -15.14 kcal Atomic # 14 Polarization: 25.14 SS G_CDS: -5.08 Total: 20.06 kcal Total LS contribution 3.97 Total: 3.97 kcal Total: -32.72 -5.15 -37.87 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000233367629.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.250 kcal (2) G-P(sol) polarization free energy of solvation -32.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.867 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds