Wall clock time and date at job start Mon Mar 30 2020 02:19:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.47244 * 2 1 4 4 N 1.46495 * 109.47042 * 180.02562 * 3 2 1 5 5 C 1.34954 * 126.03992 * 124.99983 * 4 3 2 6 6 C 1.35312 * 107.74582 * 180.02562 * 5 4 3 7 7 C 1.50706 * 126.03556 * 179.97438 * 6 5 4 8 8 H 1.08993 * 109.46894 * 25.00223 * 7 6 5 9 9 O 1.42906 * 109.46702 * 145.00574 * 7 6 5 10 10 C 1.50698 * 109.47294 * 265.00035 * 7 6 5 11 11 H 1.08005 * 119.99819 * 0.02562 * 10 7 6 12 12 C 1.37875 * 120.00046 * 179.97438 * 10 7 6 13 13 N 1.31511 * 120.00192 * 0.02562 * 12 10 7 14 14 Si 1.86798 * 119.99979 * 180.02562 * 12 10 7 15 15 H 1.48506 * 109.47297 * 180.02562 * 14 12 10 16 16 H 1.48503 * 109.47261 * 60.00310 * 14 12 10 17 17 H 1.48500 * 109.47454 * 300.00304 * 14 12 10 18 18 C 1.39864 * 107.92463 * 0.26442 * 6 5 4 19 19 N 1.30847 * 108.20107 * 359.55413 * 18 6 5 20 20 H 1.08994 * 109.47121 * 60.00083 * 1 2 3 21 21 H 1.08997 * 109.47123 * 180.02562 * 1 2 3 22 22 H 1.09001 * 109.46712 * 300.00325 * 1 2 3 23 23 H 1.08995 * 109.47084 * 239.99465 * 2 1 3 24 24 H 1.09005 * 109.46721 * 119.99670 * 2 1 3 25 25 H 1.09005 * 109.47110 * 59.99990 * 3 2 1 26 26 H 1.09002 * 109.46711 * 299.99951 * 3 2 1 27 27 H 1.08003 * 126.12362 * 359.97438 * 5 4 3 28 28 H 0.96696 * 113.99911 * 59.99830 * 9 7 6 29 29 H 0.97001 * 119.99934 * 359.97438 * 13 12 10 30 30 H 1.08002 * 125.90262 * 179.73128 * 18 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5050 1.4424 -0.0006 5 6 4.2987 2.0684 -0.8948 6 6 5.5835 1.8242 -0.5477 7 6 6.8076 2.3277 -1.2685 8 1 6.5596 3.2391 -1.8125 9 8 7.8389 2.6052 -0.3190 10 6 7.2867 1.2784 -2.2382 11 1 6.7575 0.3409 -2.3243 12 6 8.4000 1.5157 -3.0162 13 7 9.0440 2.6576 -2.9117 14 14 8.9935 0.2153 -4.2187 15 1 10.1997 0.7114 -4.9289 16 1 7.9214 -0.0730 -5.2051 17 1 9.3316 -1.0266 -3.4780 18 6 5.5750 1.0165 0.5941 19 7 4.3295 0.7920 0.9265 20 1 -0.3633 0.5138 -0.8899 21 1 -0.3633 -1.0276 0.0005 22 1 -0.3633 0.5139 0.8900 23 1 1.8934 -0.5139 -0.8899 24 1 1.8933 -0.5138 0.8901 25 1 1.6767 1.9563 0.8900 26 1 1.6767 1.9562 -0.8900 27 1 3.9675 2.6579 -1.7369 28 1 8.1104 1.8375 0.2024 29 1 8.7356 3.3330 -2.2875 30 1 6.4459 0.6449 1.1135 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000233367629.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:44 Heat of formation + Delta-G solvation = -13.819564 kcal Electronic energy + Delta-G solvation = -13591.474078 eV Core-core repulsion = 11194.040275 eV Total energy + Delta-G solvation = -2397.433803 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.111 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -42.09109 -37.93633 -36.13015 -34.24076 -32.37873 -31.61861 -28.25123 -26.76920 -24.52317 -23.13071 -21.65039 -20.99355 -19.30462 -18.29776 -16.75818 -16.36905 -15.66696 -15.60708 -15.39489 -15.14818 -14.62981 -14.16775 -13.94047 -13.47248 -13.12367 -12.96295 -12.59429 -12.44837 -12.22519 -11.94225 -11.90878 -11.68189 -11.21610 -10.62107 -10.32008 -10.22572 -9.18484 -8.51316 -6.39707 0.95743 1.55285 1.62491 1.68187 1.82777 1.93030 2.60802 3.20835 3.54081 3.90221 4.00686 4.07129 4.14372 4.28221 4.41936 4.52713 4.64057 4.71425 4.84566 5.02999 5.09505 5.15437 5.34128 5.55141 5.73825 5.92938 6.19126 6.20324 6.63053 6.75872 7.20684 7.54740 8.81414 Molecular weight = 210.11amu Principal moments of inertia in cm(-1) A = 0.042052 B = 0.007482 C = 0.006811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 665.675188 B = 3741.451836 C = 4109.803392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.131 4.131 3 C 0.127 3.873 4 N -0.374 5.374 5 C 0.044 3.956 6 C -0.248 4.248 7 C 0.282 3.718 8 H 0.028 0.972 9 O -0.589 6.589 10 C -0.639 4.639 11 H 0.041 0.959 12 C -0.015 4.015 13 N -0.922 5.922 14 Si 1.114 2.886 15 H -0.284 1.284 16 H -0.272 1.272 17 H -0.273 1.273 18 C 0.043 3.957 19 N -0.319 5.319 20 H 0.069 0.931 21 H 0.064 0.936 22 H 0.067 0.933 23 H 0.052 0.948 24 H 0.057 0.943 25 H 0.093 0.907 26 H 0.119 0.881 27 H 0.189 0.811 28 H 0.364 0.636 29 H 0.268 0.732 30 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.141 -3.981 3.940 16.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.169 4.169 3 C 0.007 3.993 4 N -0.158 5.158 5 C -0.102 4.102 6 C -0.259 4.259 7 C 0.223 3.777 8 H 0.045 0.955 9 O -0.395 6.395 10 C -0.677 4.677 11 H 0.059 0.941 12 C -0.217 4.217 13 N -0.558 5.558 14 Si 0.936 3.064 15 H -0.209 1.209 16 H -0.198 1.198 17 H -0.198 1.198 18 C -0.142 4.142 19 N -0.142 5.142 20 H 0.088 0.912 21 H 0.084 0.916 22 H 0.086 0.914 23 H 0.071 0.929 24 H 0.076 0.924 25 H 0.111 0.889 26 H 0.137 0.863 27 H 0.206 0.794 28 H 0.211 0.789 29 H 0.079 0.921 30 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges -15.023 -4.251 3.410 15.981 hybrid contribution -0.310 0.348 0.788 0.915 sum -15.333 -3.904 4.198 16.369 Atomic orbital electron populations 1.21668 0.92124 1.03006 1.03114 1.21743 0.98128 0.94941 1.02098 1.22121 0.72280 0.99544 1.05312 1.48848 1.07176 1.39248 1.20500 1.22487 0.90506 1.00366 0.96856 1.21141 0.96207 1.07540 1.01016 1.17645 0.81268 0.93670 0.85084 0.95475 1.86415 1.58540 1.39534 1.55008 1.22678 1.15882 1.03582 1.25569 0.94108 1.27225 0.93889 1.00986 0.99607 1.70779 1.41019 1.07010 1.36957 0.82987 0.76165 0.72903 0.74368 1.20911 1.19778 1.19795 1.23743 0.95465 0.98225 0.96770 1.77071 1.01538 1.20467 1.15109 0.91173 0.91649 0.91387 0.92922 0.92406 0.88854 0.86329 0.79361 0.78914 0.92146 0.79662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.92 9.91 71.98 0.71 -1.21 16 2 C -0.13 -2.72 6.12 30.59 0.19 -2.53 16 3 C 0.13 2.80 6.51 86.38 0.56 3.36 16 4 N -0.37 -12.42 3.68 -348.06 -1.28 -13.70 16 5 C 0.04 1.62 11.36 83.54 0.95 2.57 16 6 C -0.25 -10.95 5.09 -20.14 -0.10 -11.05 16 7 C 0.28 14.69 2.88 29.10 0.08 14.77 16 8 H 0.03 1.54 8.01 -2.39 -0.02 1.52 16 9 O -0.59 -30.66 11.91 -148.98 -1.77 -32.44 16 10 C -0.64 -36.03 8.74 25.60 0.22 -35.80 16 11 H 0.04 2.32 7.74 -2.91 -0.02 2.29 16 12 C -0.02 -0.87 5.40 84.65 0.46 -0.41 16 13 N -0.92 -56.91 13.53 21.45 0.29 -56.62 16 14 Si 1.11 50.14 29.90 68.60 2.05 52.19 16 15 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 16 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 17 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 18 C 0.04 1.74 11.40 85.23 0.97 2.71 16 19 N -0.32 -12.16 12.42 -57.02 -0.71 -12.87 16 20 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 21 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 22 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 23 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 24 H 0.06 1.41 8.14 -2.38 -0.02 1.39 16 25 H 0.09 1.80 8.14 -2.38 -0.02 1.78 16 26 H 0.12 1.95 8.07 -2.39 -0.02 1.93 16 27 H 0.19 5.91 8.06 -2.91 -0.02 5.89 16 28 H 0.36 16.77 8.24 -74.06 -0.61 16.16 16 29 H 0.27 17.04 6.47 -92.71 -0.60 16.44 16 30 H 0.19 6.75 7.65 -2.91 -0.02 6.72 16 Total: -1.00 -70.21 263.26 3.31 -66.90 By element: Atomic # 1 Polarization: 23.45 SS G_CDS: 0.69 Total: 24.14 kcal Atomic # 6 Polarization: -31.65 SS G_CDS: 4.05 Total: -27.60 kcal Atomic # 7 Polarization: -81.49 SS G_CDS: -1.70 Total: -83.19 kcal Atomic # 8 Polarization: -30.66 SS G_CDS: -1.77 Total: -32.44 kcal Atomic # 14 Polarization: 50.14 SS G_CDS: 2.05 Total: 52.19 kcal Total: -70.21 3.31 -66.90 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000233367629.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.081 kcal (2) G-P(sol) polarization free energy of solvation -70.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.901 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds