Wall clock time and date at job start Mon Mar 30 2020 02:17:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53003 * 109.46972 * 2 1 4 4 H 1.09005 * 109.47108 * 55.00306 * 3 2 1 5 5 C 1.52997 * 109.47458 * 294.99823 * 3 2 1 6 6 C 1.50697 * 109.47181 * 174.99835 * 3 2 1 7 7 N 1.29949 * 126.29094 * 59.97803 * 6 3 2 8 8 O 1.21299 * 110.25253 * 180.02562 * 7 6 3 9 9 C 1.33638 * 109.81146 * 359.97438 * 8 7 6 10 10 C 1.50697 * 126.54638 * 179.97438 * 9 8 7 11 11 C 1.50700 * 109.47266 * 270.02308 * 10 9 8 12 12 H 1.07999 * 119.99988 * 0.02562 * 11 10 9 13 13 C 1.37885 * 120.00047 * 180.02562 * 11 10 9 14 14 N 1.31518 * 119.99792 * 359.72305 * 13 11 10 15 15 Si 1.86795 * 120.00009 * 180.02562 * 13 11 10 16 16 H 1.48508 * 109.47021 * 359.97438 * 15 13 11 17 17 H 1.48500 * 109.47081 * 119.99727 * 15 13 11 18 18 H 1.48501 * 109.47213 * 240.00099 * 15 13 11 19 19 N 1.31126 * 106.90184 * 0.22991 * 9 8 7 20 20 H 1.09003 * 109.47271 * 60.00119 * 1 2 3 21 21 H 1.09002 * 109.47318 * 179.97438 * 1 2 3 22 22 H 1.09005 * 109.47455 * 299.99971 * 1 2 3 23 23 H 1.08996 * 109.47302 * 240.00060 * 2 1 3 24 24 H 1.09003 * 109.47271 * 119.99881 * 2 1 3 25 25 H 1.08995 * 109.47418 * 300.00436 * 5 3 2 26 26 H 1.09006 * 109.46788 * 59.99602 * 5 3 2 27 27 H 1.09000 * 109.47529 * 179.97438 * 5 3 2 28 28 H 1.09004 * 109.47205 * 150.02402 * 10 9 8 29 29 H 1.08997 * 109.47395 * 30.02894 * 10 9 8 30 30 H 0.97000 * 119.99468 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9816 0.8419 5 6 1.6352 2.1266 -1.3073 6 6 3.5418 1.4444 0.1239 7 7 4.3823 0.8952 -0.7011 8 8 5.5204 1.0722 -0.3208 9 6 5.5139 1.7729 0.8171 10 6 6.7191 2.2021 1.6135 11 6 7.0600 1.1361 2.6227 12 1 6.4639 0.2374 2.6812 13 6 8.1331 1.3080 3.4714 14 7 8.8623 2.3999 3.3964 15 14 8.5560 -0.0137 4.7218 16 1 7.5926 -1.1372 4.5995 17 1 9.9322 -0.5114 4.4696 18 1 8.4790 0.5570 6.0906 19 7 4.2584 2.0109 1.1111 20 1 -0.3634 0.5138 -0.8900 21 1 -0.3634 -1.0277 -0.0005 22 1 -0.3634 0.5138 0.8900 23 1 1.8933 -0.5138 -0.8899 24 1 1.8933 -0.5138 0.8900 25 1 2.0698 1.5876 -2.1491 26 1 0.5488 2.1252 -1.3969 27 1 1.9981 3.1544 -1.3071 28 1 6.4987 3.1356 2.1315 29 1 7.5646 2.3503 0.9418 30 1 9.6169 2.5210 3.9938 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000234006217.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:47 Heat of formation + Delta-G solvation = 18.099159 kcal Electronic energy + Delta-G solvation = -13543.693357 eV Core-core repulsion = 11147.643654 eV Total energy + Delta-G solvation = -2396.049703 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.111 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -46.41361 -38.20677 -36.38381 -35.33373 -33.48304 -30.71867 -30.14426 -26.49947 -26.02967 -24.28286 -23.20711 -20.72595 -19.24080 -18.43786 -18.24606 -16.76830 -16.15714 -15.94474 -15.16295 -14.72353 -14.47742 -14.15612 -13.81732 -13.25879 -13.12648 -12.95246 -12.72281 -12.64009 -12.52404 -12.25277 -12.18564 -11.96924 -11.86570 -11.64511 -11.55879 -10.69087 -10.65699 -8.32719 -6.46232 0.25724 1.33846 1.41973 1.44150 1.55949 2.02773 2.38528 2.74951 3.02188 3.20368 3.87044 3.94369 4.00540 4.37622 4.49180 4.55522 4.64669 4.83484 4.91635 4.95618 5.04729 5.05988 5.08603 5.13465 5.23637 5.33606 5.43623 5.57157 5.86229 6.58262 7.22704 7.26852 8.78498 Molecular weight = 210.11amu Principal moments of inertia in cm(-1) A = 0.048669 B = 0.006882 C = 0.006397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 575.180554 B = 4067.670877 C = 4375.737200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.112 4.112 3 C 0.000 4.000 4 H 0.104 0.896 5 C -0.137 4.137 6 C 0.170 3.830 7 N -0.412 5.412 8 O 0.046 5.954 9 C 0.228 3.772 10 C 0.109 3.891 11 C -0.544 4.544 12 H 0.051 0.949 13 C 0.022 3.978 14 N -0.916 5.916 15 Si 0.972 3.028 16 H -0.272 1.272 17 H -0.270 1.270 18 H -0.272 1.272 19 N -0.524 5.524 20 H 0.075 0.925 21 H 0.066 0.934 22 H 0.063 0.937 23 H 0.062 0.938 24 H 0.046 0.954 25 H 0.054 0.946 26 H 0.103 0.897 27 H 0.050 0.950 28 H 0.055 0.945 29 H 0.053 0.947 30 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.040 -2.419 -5.871 14.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.151 4.151 3 C -0.020 4.020 4 H 0.123 0.877 5 C -0.194 4.194 6 C -0.103 4.103 7 N -0.128 5.128 8 O -0.004 6.004 9 C 0.009 3.991 10 C 0.070 3.930 11 C -0.583 4.583 12 H 0.070 0.930 13 C -0.179 4.179 14 N -0.554 5.554 15 Si 0.796 3.204 16 H -0.197 1.197 17 H -0.195 1.195 18 H -0.197 1.197 19 N -0.259 5.259 20 H 0.094 0.906 21 H 0.085 0.915 22 H 0.082 0.918 23 H 0.081 0.919 24 H 0.064 0.936 25 H 0.073 0.927 26 H 0.122 0.878 27 H 0.070 0.930 28 H 0.073 0.927 29 H 0.071 0.929 30 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -13.418 -2.584 -6.283 15.040 hybrid contribution 0.918 -0.392 0.767 1.259 sum -12.500 -2.975 -5.516 13.983 Atomic orbital electron populations 1.21774 0.92137 1.02932 1.03185 1.21535 0.98531 0.93359 1.01677 1.19851 0.80652 0.99552 1.01961 0.87747 1.21844 1.03689 0.99629 0.94273 1.26615 1.01390 0.94674 0.87627 1.74428 0.89957 1.24102 1.24284 1.85235 1.24596 1.55460 1.35126 1.29739 0.96789 0.87988 0.84572 1.17910 0.84958 0.97732 0.92364 1.21038 1.14497 1.03932 1.18818 0.93040 1.25747 0.95074 0.98159 0.98904 1.70013 1.18748 1.27456 1.39156 0.85297 0.78342 0.78493 0.78312 1.19658 1.19497 1.19716 1.71967 1.01682 1.26058 1.26206 0.90637 0.91499 0.91805 0.91927 0.93561 0.92680 0.87844 0.93043 0.92681 0.92885 0.91748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.34 9.67 71.98 0.70 -1.65 16 2 C -0.11 -2.73 5.38 30.59 0.16 -2.56 16 3 C 0.00 0.00 2.86 -11.54 -0.03 -0.03 16 4 H 0.10 2.75 8.14 -2.38 -0.02 2.73 16 5 C -0.14 -3.02 8.93 71.98 0.64 -2.38 16 6 C 0.17 6.62 6.72 138.46 0.93 7.55 16 7 N -0.41 -17.07 12.16 -60.31 -0.73 -17.80 16 8 O 0.05 2.07 11.31 74.89 0.85 2.92 16 9 C 0.23 10.77 7.70 88.38 0.68 11.45 16 10 C 0.11 5.59 5.60 29.10 0.16 5.76 16 11 C -0.54 -30.07 9.09 25.60 0.23 -29.84 16 12 H 0.05 2.88 7.74 -2.91 -0.02 2.86 16 13 C 0.02 1.19 5.46 84.66 0.46 1.65 16 14 N -0.92 -51.33 13.29 21.45 0.28 -51.05 16 15 Si 0.97 42.54 29.54 68.60 2.03 44.56 16 16 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 17 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 18 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 19 N -0.52 -23.73 11.55 -303.20 -3.50 -27.23 16 20 H 0.07 0.99 6.57 -2.39 -0.02 0.98 16 21 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 22 H 0.06 0.98 8.14 -2.38 -0.02 0.96 16 23 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 24 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 25 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 26 H 0.10 1.57 6.57 -2.38 -0.02 1.55 16 27 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 28 H 0.06 2.93 8.14 -2.38 -0.02 2.91 16 29 H 0.05 2.72 8.14 -2.39 -0.02 2.70 16 30 H 0.27 14.24 8.31 -92.71 -0.77 13.47 16 Total: -1.00 -60.78 263.04 3.98 -56.79 By element: Atomic # 1 Polarization: 0.74 SS G_CDS: 1.12 Total: 1.86 kcal Atomic # 6 Polarization: -14.00 SS G_CDS: 3.94 Total: -10.06 kcal Atomic # 7 Polarization: -92.13 SS G_CDS: -3.95 Total: -96.08 kcal Atomic # 8 Polarization: 2.07 SS G_CDS: 0.85 Total: 2.92 kcal Atomic # 14 Polarization: 42.54 SS G_CDS: 2.03 Total: 44.56 kcal Total: -60.78 3.98 -56.79 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000234006217.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.890 kcal (2) G-P(sol) polarization free energy of solvation -60.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.791 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds