Wall clock time and date at job start Mon Mar 30 2020 02:34:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46902 * 111.00283 * 2 1 4 4 C 1.46906 * 110.99888 * 123.94961 * 2 1 3 5 5 C 1.52997 * 109.46848 * 66.04509 * 4 2 1 6 6 C 1.50706 * 109.47203 * 179.97438 * 5 4 2 7 7 C 1.35936 * 126.31481 * 89.71146 * 6 5 4 8 8 N 1.33062 * 107.97581 * 179.89783 * 7 6 5 9 9 C 1.32810 * 108.65076 * 0.37272 * 8 7 6 10 10 C 1.39808 * 125.79872 * 179.74476 * 9 8 7 11 11 H 1.08000 * 119.99866 * 180.02562 * 10 9 8 12 12 C 1.40331 * 120.00060 * 0.03011 * 10 9 8 13 13 N 1.30634 * 120.00256 * 359.97438 * 12 10 9 14 14 Si 1.86798 * 120.00283 * 179.97438 * 12 10 9 15 15 H 1.48500 * 109.47088 * 359.97438 * 14 12 10 16 16 H 1.48505 * 109.47061 * 119.99698 * 14 12 10 17 17 H 1.48494 * 109.47173 * 239.99912 * 14 12 10 18 18 O 1.34589 * 126.32086 * 270.03088 * 6 5 4 19 19 H 1.08997 * 109.47334 * 296.05250 * 1 2 3 20 20 H 1.09000 * 109.46674 * 56.05127 * 1 2 3 21 21 H 1.08995 * 109.47296 * 176.04950 * 1 2 3 22 22 H 1.09004 * 109.47457 * 183.95363 * 3 2 1 23 23 H 1.09001 * 109.46615 * 303.95014 * 3 2 1 24 24 H 1.08990 * 109.47358 * 63.94680 * 3 2 1 25 25 H 1.08998 * 109.47121 * 186.04343 * 4 2 1 26 26 H 1.09000 * 109.47141 * 306.04541 * 4 2 1 27 27 H 1.08998 * 109.47584 * 300.00097 * 5 4 2 28 28 H 1.09005 * 109.46901 * 60.00396 * 5 4 2 29 29 H 1.07994 * 126.01274 * 0.04413 * 7 6 5 30 30 H 0.97001 * 120.00591 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9954 -0.7659 1.1377 5 6 1.6314 -2.2425 0.9705 6 6 2.1719 -3.0284 2.1373 7 6 1.5285 -3.2751 3.3090 8 7 2.3370 -4.0019 4.0764 9 6 3.4724 -4.2099 3.4196 10 6 4.5734 -4.9274 3.8966 11 1 5.4535 -5.0386 3.2805 12 6 4.5350 -5.5032 5.1757 13 7 3.4706 -5.3684 5.9210 14 14 6.0058 -6.4625 5.8128 15 1 7.0761 -6.4691 4.7834 16 1 6.5147 -5.8228 7.0526 17 1 5.5956 -7.8587 6.1086 18 8 3.3830 -3.6105 2.2138 19 1 -0.3634 0.4513 0.9232 20 1 -0.3633 0.5739 -0.8525 21 1 -0.3633 -1.0252 -0.0708 22 1 3.0829 1.3432 -0.0709 23 1 1.5899 1.9162 -0.8525 24 1 1.7044 1.8724 0.9231 25 1 3.0797 -0.6611 1.1757 26 1 1.5611 -0.3871 2.0629 27 1 0.5471 -2.3474 0.9324 28 1 2.0658 -2.6213 0.0453 29 1 0.5349 -2.9421 3.5702 30 1 3.4442 -5.7661 6.8054 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259395584.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:04 Heat of formation + Delta-G solvation = 12.360400 kcal Electronic energy + Delta-G solvation = -13484.559842 eV Core-core repulsion = 11088.261288 eV Total energy + Delta-G solvation = -2396.298554 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.111 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.94139 -37.41781 -33.85158 -32.44136 -31.77008 -28.38139 -27.51377 -25.69335 -23.31077 -20.96635 -20.82819 -19.45936 -17.35605 -15.65988 -15.41209 -15.22520 -14.84362 -14.27437 -14.10864 -13.43225 -12.79665 -12.67974 -12.31302 -11.85971 -11.68997 -11.58504 -11.39590 -11.23743 -11.04171 -10.64239 -10.41944 -10.26328 -9.64969 -9.13350 -8.25640 -8.10570 -7.27996 -6.64960 -4.57059 2.89310 3.07274 3.13389 3.29618 3.87408 4.08954 4.45140 4.79367 5.21547 5.26370 5.39527 5.44504 5.51217 5.66659 5.82312 5.88173 5.90054 6.00269 6.20076 6.34114 6.46149 6.63210 6.90977 7.13085 7.15466 7.17626 7.77812 8.01934 8.20503 8.57828 8.82048 10.02896 10.28873 Molecular weight = 210.11amu Principal moments of inertia in cm(-1) A = 0.074201 B = 0.006171 C = 0.005949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 377.264213 B = 4536.149249 C = 4705.871132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.551 5.551 3 C 0.025 3.975 4 C 0.058 3.942 5 C 0.003 3.997 6 C -0.206 4.206 7 C -0.001 4.001 8 N -0.539 5.539 9 C 0.330 3.670 10 C -0.437 4.437 11 H 0.091 0.909 12 C 0.076 3.924 13 N -0.729 5.729 14 Si 0.926 3.074 15 H -0.259 1.259 16 H -0.272 1.272 17 H -0.271 1.271 18 O -0.244 6.244 19 H 0.024 0.976 20 H 0.063 0.937 21 H 0.072 0.928 22 H 0.067 0.933 23 H 0.064 0.936 24 H 0.023 0.977 25 H 0.074 0.926 26 H 0.035 0.965 27 H 0.070 0.930 28 H 0.068 0.932 29 H 0.142 0.858 30 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.404 6.943 -6.098 9.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.275 5.275 3 C -0.123 4.123 4 C -0.069 4.069 5 C -0.035 4.035 6 C -0.261 4.261 7 C -0.147 4.147 8 N -0.270 5.270 9 C 0.146 3.854 10 C -0.472 4.472 11 H 0.109 0.891 12 C -0.149 4.149 13 N -0.353 5.353 14 Si 0.749 3.251 15 H -0.182 1.182 16 H -0.197 1.197 17 H -0.197 1.197 18 O -0.140 6.140 19 H 0.042 0.958 20 H 0.082 0.918 21 H 0.091 0.909 22 H 0.086 0.914 23 H 0.083 0.917 24 H 0.041 0.959 25 H 0.092 0.908 26 H 0.053 0.947 27 H 0.089 0.911 28 H 0.086 0.914 29 H 0.159 0.841 30 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -2.441 6.435 -5.728 8.954 hybrid contribution 0.301 0.343 0.445 0.637 sum -2.140 6.778 -5.283 8.856 Atomic orbital electron populations 1.22431 0.87803 1.02485 1.00013 1.62029 1.07822 1.13455 1.44149 1.22356 1.00838 0.89086 1.00040 1.22291 1.00345 0.93939 0.90362 1.19406 0.98903 0.90958 0.94250 1.22329 0.88492 1.14233 1.01052 1.22932 0.99915 1.00327 0.91526 1.71443 1.02341 1.22764 1.30413 1.22315 0.94419 0.91281 0.77379 1.18171 0.98557 1.29938 1.00542 0.89055 1.25857 0.97490 0.95714 0.95866 1.70015 1.26323 1.30903 1.08096 0.85977 0.80669 0.79115 0.79300 1.18243 1.19676 1.19658 1.84379 1.33531 1.57872 1.38261 0.95756 0.91847 0.90910 0.91420 0.91716 0.95863 0.90764 0.94683 0.91131 0.91350 0.84079 0.91150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 9.32 60.06 0.56 0.81 16 2 N -0.55 -7.81 5.02 -251.26 -1.26 -9.07 16 3 C 0.03 0.30 9.57 60.07 0.57 0.87 16 4 C 0.06 0.97 4.94 -3.82 -0.02 0.95 16 5 C 0.00 0.06 5.69 -27.88 -0.16 -0.10 16 6 C -0.21 -4.98 6.67 -35.13 -0.23 -5.21 16 7 C 0.00 -0.03 11.81 -17.84 -0.21 -0.24 16 8 N -0.54 -16.03 9.43 -13.43 -0.13 -16.15 16 9 C 0.33 9.77 7.74 -16.54 -0.13 9.64 16 10 C -0.44 -12.28 9.45 -38.21 -0.36 -12.65 16 11 H 0.09 2.39 7.85 -52.49 -0.41 1.98 16 12 C 0.08 1.98 5.50 -17.27 -0.10 1.88 16 13 N -0.73 -20.16 11.88 55.57 0.66 -19.50 16 14 Si 0.93 18.87 29.56 -169.99 -5.03 13.84 16 15 H -0.26 -5.13 7.11 56.52 0.40 -4.73 16 16 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 17 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 18 O -0.24 -6.76 10.82 3.12 0.03 -6.73 16 19 H 0.02 0.28 8.14 -51.93 -0.42 -0.14 16 20 H 0.06 0.64 8.12 -51.93 -0.42 0.22 16 21 H 0.07 0.87 6.47 -51.93 -0.34 0.53 16 22 H 0.07 0.78 8.12 -51.93 -0.42 0.36 16 23 H 0.06 0.64 8.12 -51.93 -0.42 0.22 16 24 H 0.02 0.27 8.14 -51.93 -0.42 -0.16 16 25 H 0.07 1.32 8.06 -51.93 -0.42 0.90 16 26 H 0.03 0.60 8.12 -51.93 -0.42 0.18 16 27 H 0.07 1.16 6.55 -51.93 -0.34 0.82 16 28 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 29 H 0.14 3.13 8.06 -52.49 -0.42 2.71 16 30 H 0.28 6.84 8.29 -40.82 -0.34 6.50 16 LS Contribution 260.93 15.07 3.93 3.93 Total: -1.00 -31.59 260.93 -5.88 -37.47 By element: Atomic # 1 Polarization: 4.28 SS G_CDS: -4.02 Total: 0.26 kcal Atomic # 6 Polarization: -3.97 SS G_CDS: -0.07 Total: -4.04 kcal Atomic # 7 Polarization: -44.00 SS G_CDS: -0.73 Total: -44.73 kcal Atomic # 8 Polarization: -6.76 SS G_CDS: 0.03 Total: -6.73 kcal Atomic # 14 Polarization: 18.87 SS G_CDS: -5.03 Total: 13.84 kcal Total LS contribution 3.93 Total: 3.93 kcal Total: -31.59 -5.88 -37.47 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259395584.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.827 kcal (2) G-P(sol) polarization free energy of solvation -31.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.467 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds