Wall clock time and date at job start Mon Mar 30 2020 02:34:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46902 * 111.00283 * 2 1 4 4 C 1.46906 * 110.99888 * 123.94961 * 2 1 3 5 5 C 1.52997 * 109.46848 * 66.04509 * 4 2 1 6 6 C 1.50706 * 109.47203 * 179.97438 * 5 4 2 7 7 C 1.35936 * 126.31481 * 89.71146 * 6 5 4 8 8 N 1.33062 * 107.97581 * 179.89783 * 7 6 5 9 9 C 1.32810 * 108.65076 * 0.37272 * 8 7 6 10 10 C 1.39808 * 125.79872 * 179.74476 * 9 8 7 11 11 H 1.08000 * 119.99866 * 180.02562 * 10 9 8 12 12 C 1.40331 * 120.00060 * 0.03011 * 10 9 8 13 13 N 1.30634 * 120.00256 * 359.97438 * 12 10 9 14 14 Si 1.86798 * 120.00283 * 179.97438 * 12 10 9 15 15 H 1.48500 * 109.47088 * 359.97438 * 14 12 10 16 16 H 1.48505 * 109.47061 * 119.99698 * 14 12 10 17 17 H 1.48494 * 109.47173 * 239.99912 * 14 12 10 18 18 O 1.34589 * 126.32086 * 270.03088 * 6 5 4 19 19 H 1.08997 * 109.47334 * 296.05250 * 1 2 3 20 20 H 1.09000 * 109.46674 * 56.05127 * 1 2 3 21 21 H 1.08995 * 109.47296 * 176.04950 * 1 2 3 22 22 H 1.09004 * 109.47457 * 183.95363 * 3 2 1 23 23 H 1.09001 * 109.46615 * 303.95014 * 3 2 1 24 24 H 1.08990 * 109.47358 * 63.94680 * 3 2 1 25 25 H 1.08998 * 109.47121 * 186.04343 * 4 2 1 26 26 H 1.09000 * 109.47141 * 306.04541 * 4 2 1 27 27 H 1.08998 * 109.47584 * 300.00097 * 5 4 2 28 28 H 1.09005 * 109.46901 * 60.00396 * 5 4 2 29 29 H 1.07994 * 126.01274 * 0.04413 * 7 6 5 30 30 H 0.97001 * 120.00591 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9954 -0.7659 1.1377 5 6 1.6314 -2.2425 0.9705 6 6 2.1719 -3.0284 2.1373 7 6 1.5285 -3.2751 3.3090 8 7 2.3370 -4.0019 4.0764 9 6 3.4724 -4.2099 3.4196 10 6 4.5734 -4.9274 3.8966 11 1 5.4535 -5.0386 3.2805 12 6 4.5350 -5.5032 5.1757 13 7 3.4706 -5.3684 5.9210 14 14 6.0058 -6.4625 5.8128 15 1 7.0761 -6.4691 4.7834 16 1 6.5147 -5.8228 7.0526 17 1 5.5956 -7.8587 6.1086 18 8 3.3830 -3.6105 2.2138 19 1 -0.3634 0.4513 0.9232 20 1 -0.3633 0.5739 -0.8525 21 1 -0.3633 -1.0252 -0.0708 22 1 3.0829 1.3432 -0.0709 23 1 1.5899 1.9162 -0.8525 24 1 1.7044 1.8724 0.9231 25 1 3.0797 -0.6611 1.1757 26 1 1.5611 -0.3871 2.0629 27 1 0.5471 -2.3474 0.9324 28 1 2.0658 -2.6213 0.0453 29 1 0.5349 -2.9421 3.5702 30 1 3.4442 -5.7661 6.8054 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259395584.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:03 Heat of formation + Delta-G solvation = -11.626438 kcal Electronic energy + Delta-G solvation = -13485.599990 eV Core-core repulsion = 11088.261288 eV Total energy + Delta-G solvation = -2397.338702 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.111 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -43.02198 -38.58341 -35.86196 -34.50376 -33.39059 -30.30391 -28.46619 -27.37454 -24.87893 -22.94363 -22.30502 -21.30400 -19.41440 -17.58563 -16.92601 -16.54346 -16.43537 -15.89796 -15.54772 -14.97227 -14.57256 -14.26151 -13.55385 -13.30979 -13.16904 -13.00888 -12.79059 -12.69730 -12.50272 -12.39228 -11.95593 -11.82877 -11.66718 -11.13254 -10.22467 -9.38062 -9.29921 -8.61110 -6.66964 1.06390 1.40714 1.56102 1.60336 2.17202 2.42687 2.70879 3.15289 3.28259 3.98084 4.18662 4.25987 4.31673 4.44932 4.51504 4.62784 4.72731 4.78160 4.86898 4.95031 4.98559 5.02026 5.11573 5.18479 5.81607 5.96626 6.00584 6.10714 6.17259 6.51404 6.72695 7.94794 8.35879 Molecular weight = 210.11amu Principal moments of inertia in cm(-1) A = 0.074201 B = 0.006171 C = 0.005949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 377.264213 B = 4536.149249 C = 4705.871132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.559 5.559 3 C 0.023 3.977 4 C 0.070 3.930 5 C 0.009 3.991 6 C -0.191 4.191 7 C -0.030 4.030 8 N -0.577 5.577 9 C 0.294 3.706 10 C -0.470 4.470 11 H 0.099 0.901 12 C 0.029 3.971 13 N -0.773 5.773 14 Si 1.015 2.985 15 H -0.250 1.250 16 H -0.260 1.260 17 H -0.260 1.260 18 O -0.261 6.261 19 H 0.026 0.974 20 H 0.086 0.914 21 H 0.072 0.928 22 H 0.065 0.935 23 H 0.088 0.912 24 H 0.025 0.975 25 H 0.057 0.943 26 H 0.029 0.971 27 H 0.097 0.903 28 H 0.071 0.929 29 H 0.170 0.830 30 H 0.288 0.712 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.229 7.293 -6.682 10.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 N -0.283 5.283 3 C -0.125 4.125 4 C -0.059 4.059 5 C -0.029 4.029 6 C -0.245 4.245 7 C -0.174 4.174 8 N -0.309 5.309 9 C 0.110 3.890 10 C -0.504 4.504 11 H 0.117 0.883 12 C -0.192 4.192 13 N -0.398 5.398 14 Si 0.832 3.168 15 H -0.173 1.173 16 H -0.185 1.185 17 H -0.185 1.185 18 O -0.158 6.158 19 H 0.045 0.955 20 H 0.104 0.896 21 H 0.091 0.909 22 H 0.084 0.916 23 H 0.106 0.894 24 H 0.044 0.956 25 H 0.076 0.924 26 H 0.047 0.953 27 H 0.115 0.885 28 H 0.090 0.910 29 H 0.187 0.813 30 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -2.306 6.820 -6.343 9.595 hybrid contribution 0.140 0.332 0.530 0.641 sum -2.165 7.152 -5.813 9.468 Atomic orbital electron populations 1.22530 0.86252 1.03022 1.01171 1.62008 1.09288 1.14614 1.42373 1.22439 1.00882 0.87931 1.01199 1.22001 0.99436 0.93056 0.91359 1.19579 1.00132 0.91359 0.91847 1.23327 0.86869 1.12231 1.02089 1.23398 1.01083 1.00922 0.91963 1.71353 1.03207 1.24423 1.31894 1.22852 0.95350 0.92686 0.78137 1.18716 0.98740 1.30909 1.02082 0.88268 1.27066 1.01008 0.96050 0.95059 1.70099 1.28913 1.31825 1.08915 0.84697 0.75934 0.77390 0.78750 1.17307 1.18477 1.18461 1.84381 1.35178 1.58164 1.38035 0.95536 0.89564 0.90908 0.91643 0.89360 0.95637 0.92427 0.95292 0.88500 0.91049 0.81273 0.90122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.38 9.32 127.69 1.19 1.57 16 2 N -0.56 -14.59 5.02 -948.86 -4.76 -19.35 16 3 C 0.02 0.50 9.57 127.69 1.22 1.72 16 4 C 0.07 2.25 4.94 86.30 0.43 2.68 16 5 C 0.01 0.31 5.69 29.85 0.17 0.48 16 6 C -0.19 -9.26 6.67 25.15 0.17 -9.10 16 7 C -0.03 -1.56 11.81 83.97 0.99 -0.57 16 8 N -0.58 -35.27 9.43 -309.37 -2.92 -38.19 16 9 C 0.29 17.96 7.74 84.92 0.66 18.62 16 10 C -0.47 -27.03 9.45 23.16 0.22 -26.81 16 11 H 0.10 5.30 7.85 -2.91 -0.02 5.27 16 12 C 0.03 1.53 5.50 85.38 0.47 2.00 16 13 N -0.77 -43.47 11.88 21.89 0.26 -43.21 16 14 Si 1.01 38.30 29.56 68.60 2.03 40.33 16 15 H -0.25 -8.97 7.11 99.48 0.71 -8.26 16 16 H -0.26 -9.29 7.11 99.48 0.71 -8.58 16 17 H -0.26 -9.29 7.11 99.48 0.71 -8.58 16 18 O -0.26 -14.82 10.82 -11.76 -0.13 -14.95 16 19 H 0.03 0.55 8.14 -2.39 -0.02 0.53 16 20 H 0.09 1.44 8.12 -2.39 -0.02 1.42 16 21 H 0.07 1.52 6.47 -2.39 -0.02 1.51 16 22 H 0.06 1.41 8.12 -2.38 -0.02 1.39 16 23 H 0.09 1.48 8.12 -2.39 -0.02 1.46 16 24 H 0.02 0.53 8.14 -2.39 -0.02 0.51 16 25 H 0.06 2.04 8.06 -2.39 -0.02 2.02 16 26 H 0.03 0.96 8.12 -2.39 -0.02 0.94 16 27 H 0.10 2.97 6.55 -2.39 -0.02 2.96 16 28 H 0.07 2.53 8.14 -2.38 -0.02 2.52 16 29 H 0.17 7.45 8.06 -2.91 -0.02 7.43 16 30 H 0.29 14.33 8.29 -92.71 -0.77 13.57 16 Total: -1.00 -69.79 260.93 1.12 -68.68 By element: Atomic # 1 Polarization: 14.98 SS G_CDS: 1.12 Total: 16.10 kcal Atomic # 6 Polarization: -14.92 SS G_CDS: 5.51 Total: -9.41 kcal Atomic # 7 Polarization: -93.34 SS G_CDS: -7.42 Total: -100.76 kcal Atomic # 8 Polarization: -14.82 SS G_CDS: -0.13 Total: -14.95 kcal Atomic # 14 Polarization: 38.30 SS G_CDS: 2.03 Total: 40.33 kcal Total: -69.79 1.12 -68.68 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259395584.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.050 kcal (2) G-P(sol) polarization free energy of solvation -69.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.677 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds