Wall clock time and date at job start Mon Mar 30 2020 02:34:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.36939 * 119.99366 * 2 1 4 4 H 1.08003 * 119.99528 * 202.67213 * 3 2 1 5 5 C 1.38807 * 120.00262 * 22.68519 * 3 2 1 6 6 N 1.31618 * 120.00209 * 11.49611 * 5 3 2 7 7 Si 1.86806 * 119.99994 * 191.49728 * 5 3 2 8 8 H 1.48494 * 109.47151 * 359.97438 * 7 5 3 9 9 H 1.48496 * 109.47129 * 119.99946 * 7 5 3 10 10 H 1.48501 * 109.46960 * 239.99859 * 7 5 3 11 11 C 1.46499 * 120.00272 * 180.02562 * 2 1 3 12 12 C 1.52995 * 109.46758 * 269.99929 * 11 2 1 13 13 H 1.09000 * 109.47544 * 304.99661 * 12 11 2 14 14 O 1.42898 * 109.47745 * 65.00181 * 12 11 2 15 15 C 1.50705 * 109.47102 * 184.99868 * 12 11 2 16 16 C 1.34851 * 125.89288 * 275.32767 * 15 12 11 17 17 C 1.40885 * 107.41855 * 180.15157 * 16 15 12 18 18 C 1.34852 * 107.41568 * 359.56508 * 17 16 15 19 19 N 1.36335 * 108.22162 * 0.26525 * 18 17 16 20 20 H 0.97000 * 125.64303 * 180.02562 * 19 18 17 21 21 H 1.09001 * 109.46790 * 273.92373 * 1 2 3 22 22 H 1.08995 * 109.47584 * 33.92710 * 1 2 3 23 23 H 1.09003 * 109.46683 * 153.92733 * 1 2 3 24 24 H 0.97005 * 120.00504 * 180.02562 * 6 5 3 25 25 H 1.08999 * 109.46973 * 149.99530 * 11 2 1 26 26 H 1.08997 * 109.46887 * 29.99501 * 11 2 1 27 27 H 0.96701 * 114.00013 * 59.98925 * 14 12 11 28 28 H 1.08004 * 126.28983 * 0.02562 * 16 15 12 29 29 H 1.08002 * 126.29475 * 179.82492 * 17 16 15 30 30 H 1.08000 * 125.88958 * 180.28325 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1860 0.0000 4 1 3.1670 1.2222 -0.3605 5 6 1.5360 2.3416 0.4636 6 7 0.3911 2.2655 1.1084 7 14 2.3352 4.0047 0.1723 8 1 3.6077 3.8192 -0.5703 9 1 1.4187 4.8621 -0.6215 10 1 2.6148 4.6550 1.4778 11 6 2.1976 -1.2687 -0.0006 12 6 2.4526 -1.7109 1.4417 13 1 2.9643 -0.9138 1.9811 14 8 1.2062 -1.9944 2.0806 15 6 3.3108 -2.9497 1.4430 16 6 2.8698 -4.2171 1.3105 17 6 3.9947 -5.0634 1.3697 18 6 5.0812 -4.2802 1.5264 19 7 4.6678 -2.9818 1.5722 20 1 5.2438 -2.2086 1.6785 21 1 -0.3633 0.0703 1.0253 22 1 -0.3634 0.8526 -0.5735 23 1 -0.3633 -0.9231 -0.4517 24 1 -0.0379 3.0731 1.4321 25 1 3.1500 -1.1381 -0.5144 26 1 1.6085 -2.0281 -0.5147 27 1 0.6956 -2.6956 1.6531 28 1 1.8428 -4.5268 1.1844 29 1 3.9884 -6.1410 1.2980 30 1 6.1027 -4.6224 1.6023 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259598107.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:29 Heat of formation + Delta-G solvation = -3.054965 kcal Electronic energy + Delta-G solvation = -13934.954613 eV Core-core repulsion = 11537.987598 eV Total energy + Delta-G solvation = -2396.967015 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.111 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.97887 -38.57720 -36.56645 -33.31489 -31.76909 -31.16936 -28.37174 -27.78763 -24.88829 -22.58892 -21.46805 -20.85651 -19.24345 -18.64083 -17.11699 -16.46423 -16.09837 -15.52825 -15.26777 -14.83426 -14.55850 -14.32830 -13.85472 -13.40812 -13.07107 -12.90517 -12.81657 -12.57323 -12.17160 -12.08536 -12.04005 -11.82211 -11.25304 -10.61735 -9.71096 -9.01759 -8.65510 -7.82414 -5.31117 1.39195 1.45186 1.46357 1.56347 2.16224 2.47979 2.52475 3.30397 3.59677 3.78914 4.14023 4.23638 4.47004 4.52009 4.65533 4.76709 4.87585 4.93768 5.08087 5.35087 5.40750 5.48308 5.62281 5.80963 6.15865 6.26775 6.32267 6.80589 6.92417 7.14636 7.86524 8.30763 9.20739 Molecular weight = 210.11amu Principal moments of inertia in cm(-1) A = 0.048072 B = 0.008187 C = 0.007436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 582.321324 B = 3419.235559 C = 3764.735946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.183 3.817 2 N -0.610 5.610 3 C -0.269 4.269 4 H 0.072 0.928 5 C -0.054 4.054 6 N -0.935 5.935 7 Si 0.969 3.031 8 H -0.264 1.264 9 H -0.290 1.290 10 H -0.293 1.293 11 C 0.135 3.865 12 C 0.166 3.834 13 H 0.066 0.934 14 O -0.557 6.557 15 C -0.023 4.023 16 C -0.208 4.208 17 C -0.221 4.221 18 C -0.011 4.011 19 N -0.553 5.553 20 H 0.421 0.579 21 H 0.006 0.994 22 H 0.013 0.987 23 H 0.029 0.971 24 H 0.247 0.753 25 H 0.052 0.948 26 H 0.064 0.936 27 H 0.378 0.622 28 H 0.139 0.861 29 H 0.152 0.848 30 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.706 -12.018 -0.865 14.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 N -0.333 5.333 3 C -0.399 4.399 4 H 0.090 0.910 5 C -0.249 4.249 6 N -0.581 5.581 7 Si 0.797 3.203 8 H -0.188 1.188 9 H -0.217 1.217 10 H -0.220 1.220 11 C 0.008 3.992 12 C 0.103 3.897 13 H 0.084 0.916 14 O -0.363 6.363 15 C -0.137 4.137 16 C -0.232 4.232 17 C -0.245 4.245 18 C -0.142 4.142 19 N -0.150 5.150 20 H 0.258 0.742 21 H 0.024 0.976 22 H 0.032 0.968 23 H 0.047 0.953 24 H 0.056 0.944 25 H 0.071 0.929 26 H 0.082 0.918 27 H 0.226 0.774 28 H 0.157 0.843 29 H 0.170 0.830 30 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges 7.875 -11.285 -0.417 13.767 hybrid contribution 0.155 1.028 -0.148 1.050 sum 8.030 -10.257 -0.565 13.038 Atomic orbital electron populations 1.20509 0.82506 0.95616 0.97605 1.44122 1.02288 1.01301 1.85550 1.19606 0.98537 0.86689 1.35045 0.90985 1.25852 0.98498 1.02010 0.98535 1.70279 1.19529 1.27369 1.40965 0.85175 0.78156 0.79946 0.76988 1.18845 1.21723 1.22037 1.21576 0.96465 0.87599 0.93605 1.20817 0.82650 0.90157 0.96125 0.91589 1.86639 1.32192 1.60288 1.57131 1.21258 0.84594 0.97337 1.10481 1.20842 0.99962 0.91636 1.10801 1.21170 0.92030 0.99966 1.11364 1.22412 1.00942 0.82158 1.08705 1.42047 1.06428 1.09085 1.57405 0.74196 0.97599 0.96807 0.95272 0.94366 0.92937 0.91780 0.77351 0.84330 0.83028 0.78609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.29 8.61 127.77 1.10 10.39 16 2 N -0.61 -31.05 2.89 -726.95 -2.10 -33.14 16 3 C -0.27 -14.89 9.67 84.03 0.81 -14.08 16 4 H 0.07 3.83 7.85 -2.91 -0.02 3.81 16 5 C -0.05 -3.06 5.12 84.86 0.43 -2.62 16 6 N -0.94 -56.76 10.62 21.65 0.23 -56.53 16 7 Si 0.97 45.43 29.57 68.60 2.03 47.46 16 8 H -0.26 -11.60 7.11 99.48 0.71 -10.90 16 9 H -0.29 -13.59 7.11 99.48 0.71 -12.88 16 10 H -0.29 -13.79 7.11 99.48 0.71 -13.08 16 11 C 0.13 5.45 5.35 86.38 0.46 5.91 16 12 C 0.17 6.37 3.74 29.85 0.11 6.48 16 13 H 0.07 2.94 8.14 -2.39 -0.02 2.92 16 14 O -0.56 -22.38 12.77 -148.98 -1.90 -24.28 16 15 C -0.02 -0.71 6.23 41.08 0.26 -0.46 16 16 C -0.21 -5.99 10.21 22.14 0.23 -5.76 16 17 C -0.22 -5.43 10.86 22.14 0.24 -5.18 16 18 C -0.01 -0.24 11.94 83.22 0.99 0.75 16 19 N -0.55 -14.43 6.07 -182.76 -1.11 -15.54 16 20 H 0.42 9.35 8.96 -92.71 -0.83 8.52 16 21 H 0.01 0.32 7.43 -2.39 -0.02 0.30 16 22 H 0.01 0.74 7.20 -2.39 -0.02 0.72 16 23 H 0.03 1.24 7.85 -2.39 -0.02 1.22 16 24 H 0.25 14.54 8.31 -92.70 -0.77 13.77 16 25 H 0.05 2.07 8.03 -2.39 -0.02 2.05 16 26 H 0.06 2.33 7.86 -2.39 -0.02 2.31 16 27 H 0.38 11.97 8.18 -74.06 -0.61 11.36 16 28 H 0.14 3.60 7.57 -2.91 -0.02 3.58 16 29 H 0.15 2.97 8.06 -2.91 -0.02 2.94 16 30 H 0.20 2.70 8.06 -2.91 -0.02 2.68 16 Total: -1.00 -68.76 258.46 1.49 -67.26 By element: Atomic # 1 Polarization: 19.62 SS G_CDS: -0.29 Total: 19.33 kcal Atomic # 6 Polarization: -9.20 SS G_CDS: 4.64 Total: -4.56 kcal Atomic # 7 Polarization: -102.24 SS G_CDS: -2.98 Total: -105.21 kcal Atomic # 8 Polarization: -22.38 SS G_CDS: -1.90 Total: -24.28 kcal Atomic # 14 Polarization: 45.43 SS G_CDS: 2.03 Total: 47.46 kcal Total: -68.76 1.49 -67.26 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259598107.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.209 kcal (2) G-P(sol) polarization free energy of solvation -68.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.264 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds