Wall clock time and date at job start Mon Mar 30 2020 02:34:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46491 * 1 3 3 C 1.36933 * 120.00209 * 2 1 4 4 H 1.08005 * 120.00378 * 203.18668 * 3 2 1 5 5 C 1.38816 * 119.99807 * 23.19214 * 3 2 1 6 6 N 1.31621 * 120.00126 * 13.71056 * 5 3 2 7 7 Si 1.86799 * 119.99715 * 193.71626 * 5 3 2 8 8 H 1.48497 * 109.47257 * 359.97438 * 7 5 3 9 9 H 1.48503 * 109.47151 * 119.99778 * 7 5 3 10 10 H 1.48501 * 109.47170 * 239.99639 * 7 5 3 11 11 C 1.46503 * 120.00039 * 179.97438 * 2 1 3 12 12 C 1.53000 * 109.47253 * 89.99931 * 11 2 1 13 13 H 1.09009 * 109.46606 * 60.00221 * 12 11 2 14 14 O 1.42901 * 109.47415 * 300.00583 * 12 11 2 15 15 C 1.50700 * 109.47302 * 179.97438 * 12 11 2 16 16 C 1.34854 * 125.88576 * 85.00178 * 15 12 11 17 17 C 1.40894 * 107.41418 * 179.74903 * 16 15 12 18 18 C 1.34852 * 107.41850 * 0.22822 * 17 16 15 19 19 N 1.36340 * 125.89238 * 265.13705 * 15 12 11 20 20 H 0.96995 * 125.63755 * 0.02607 * 19 15 12 21 21 H 1.08996 * 109.47794 * 275.15892 * 1 2 3 22 22 H 1.09003 * 109.47078 * 35.15825 * 1 2 3 23 23 H 1.09001 * 109.47271 * 155.15326 * 1 2 3 24 24 H 0.96998 * 119.99673 * 180.02562 * 6 5 3 25 25 H 1.09003 * 109.46748 * 330.00588 * 11 2 1 26 26 H 1.08994 * 109.47176 * 210.00242 * 11 2 1 27 27 H 0.96703 * 113.99653 * 300.00141 * 14 12 11 28 28 H 1.07997 * 126.29355 * 0.02562 * 16 15 12 29 29 H 1.07998 * 126.28949 * 180.25342 * 17 16 15 30 30 H 1.07996 * 125.89020 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1496 1.1858 0.0000 4 1 3.1643 1.2237 -0.3683 5 6 1.5397 2.3394 0.4734 6 7 0.4224 2.2571 1.1643 7 14 2.3046 4.0087 0.1299 8 1 3.5489 3.8298 -0.6606 9 1 1.3460 4.8440 -0.6373 10 1 2.6272 4.6793 1.4150 11 6 2.1974 -1.2687 0.0006 12 6 2.4524 -1.7111 -1.4417 13 1 3.0416 -0.9516 -1.9559 14 8 1.2039 -1.8822 -2.1154 15 6 3.2065 -3.0159 -1.4411 16 6 2.6597 -4.2448 -1.3452 17 6 3.7129 -5.1796 -1.3897 18 6 4.8636 -4.4861 -1.5059 19 7 4.5593 -3.1573 -1.5349 20 1 5.1992 -2.4326 -1.6130 21 1 -0.3634 0.0924 1.0234 22 1 -0.3633 0.8402 -0.5918 23 1 -0.3634 -0.9325 -0.4318 24 1 -0.0040 3.0633 1.4948 25 1 1.6083 -2.0282 0.5147 26 1 3.1498 -1.1382 0.5143 27 1 0.6266 -2.5447 -1.7115 28 1 1.6075 -4.4711 -1.2558 29 1 3.6164 -6.2541 -1.3402 30 1 5.8550 -4.9100 -1.5661 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259598108.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:31 Heat of formation + Delta-G solvation = 19.418300 kcal Electronic energy + Delta-G solvation = -13878.274687 eV Core-core repulsion = 11482.282186 eV Total energy + Delta-G solvation = -2395.992501 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 210.111 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.89911 -37.04548 -34.69658 -31.37313 -30.68718 -29.74369 -26.90421 -25.71489 -23.26122 -20.77691 -20.44811 -19.73152 -17.94494 -16.70521 -15.33669 -14.86413 -14.55886 -14.06878 -13.74117 -13.38954 -13.16184 -12.84292 -12.42223 -11.97688 -11.72553 -11.13668 -10.90521 -10.72314 -10.59433 -10.34738 -10.03390 -9.87588 -9.66660 -8.65901 -8.53503 -7.82968 -6.67240 -5.70474 -3.17670 2.47946 3.22197 3.37884 3.44655 3.46564 3.52272 4.49691 5.02789 5.15627 5.31226 5.43691 5.63057 5.66502 5.82895 5.95034 6.04303 6.38013 6.42733 6.62854 6.68191 6.87050 7.24013 7.34036 7.45982 7.74638 7.79122 7.82625 8.16762 8.41241 9.24944 9.88205 10.37636 11.33339 Molecular weight = 210.11amu Principal moments of inertia in cm(-1) A = 0.051079 B = 0.007785 C = 0.007152 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 548.042296 B = 3595.804491 C = 3914.122358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.167 3.833 2 N -0.592 5.592 3 C -0.258 4.258 4 H 0.065 0.935 5 C 0.003 3.997 6 N -0.905 5.905 7 Si 0.904 3.096 8 H -0.279 1.279 9 H -0.289 1.289 10 H -0.290 1.290 11 C 0.133 3.867 12 C 0.149 3.851 13 H 0.096 0.904 14 O -0.540 6.540 15 C 0.006 3.994 16 C -0.203 4.203 17 C -0.201 4.201 18 C -0.026 4.026 19 N -0.553 5.553 20 H 0.413 0.587 21 H 0.027 0.973 22 H 0.038 0.962 23 H 0.002 0.998 24 H 0.252 0.748 25 H 0.043 0.957 26 H 0.052 0.948 27 H 0.366 0.634 28 H 0.131 0.869 29 H 0.130 0.870 30 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.844 -11.083 -4.129 13.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.314 5.314 3 C -0.387 4.387 4 H 0.083 0.917 5 C -0.196 4.196 6 N -0.549 5.549 7 Si 0.734 3.266 8 H -0.204 1.204 9 H -0.215 1.215 10 H -0.217 1.217 11 C 0.004 3.996 12 C 0.085 3.915 13 H 0.113 0.887 14 O -0.343 6.343 15 C -0.109 4.109 16 C -0.227 4.227 17 C -0.226 4.226 18 C -0.157 4.157 19 N -0.149 5.149 20 H 0.249 0.751 21 H 0.046 0.954 22 H 0.057 0.943 23 H 0.021 0.979 24 H 0.062 0.938 25 H 0.062 0.938 26 H 0.071 0.929 27 H 0.212 0.788 28 H 0.149 0.851 29 H 0.148 0.852 30 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 6.050 -10.342 -4.439 12.777 hybrid contribution 0.557 0.736 0.176 0.939 sum 6.606 -9.606 -4.263 12.413 Atomic orbital electron populations 1.20764 0.82285 0.95798 0.98922 1.43763 1.02008 1.00148 1.85467 1.19184 0.98300 0.85820 1.35428 0.91692 1.25009 0.97957 0.98498 0.98087 1.70088 1.19989 1.27103 1.37765 0.86203 0.78499 0.84424 0.77490 1.20414 1.21531 1.21744 1.21304 0.96994 0.89331 0.92004 1.21320 0.83653 0.88902 0.97595 0.88659 1.86626 1.28074 1.63151 1.56424 1.21644 0.83307 0.98353 1.07584 1.20554 0.98945 0.91504 1.11743 1.20825 0.92270 0.98781 1.10757 1.21744 0.99579 0.82800 1.11580 1.41950 1.07128 1.07636 1.58176 0.75132 0.95426 0.94285 0.97898 0.93785 0.93827 0.92925 0.78768 0.85129 0.85170 0.82376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.17 4.20 8.66 59.84 0.52 4.72 16 2 N -0.59 -15.07 2.84 -181.12 -0.51 -15.59 16 3 C -0.26 -7.16 9.65 -15.06 -0.15 -7.31 16 4 H 0.07 1.75 7.87 -52.48 -0.41 1.34 16 5 C 0.00 0.08 5.09 -17.43 -0.09 0.00 16 6 N -0.90 -26.81 10.76 55.49 0.60 -26.21 16 7 Si 0.90 22.05 29.58 -169.99 -5.03 17.03 16 8 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 9 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 10 H -0.29 -7.10 7.11 56.52 0.40 -6.69 16 11 C 0.13 2.74 5.32 -4.04 -0.02 2.71 16 12 C 0.15 2.70 3.76 -27.88 -0.10 2.60 16 13 H 0.10 1.86 8.14 -51.92 -0.42 1.43 16 14 O -0.54 -10.04 12.02 -35.23 -0.42 -10.46 16 15 C 0.01 0.09 6.24 -81.79 -0.51 -0.42 16 16 C -0.20 -3.05 10.21 -39.78 -0.41 -3.46 16 17 C -0.20 -2.72 10.86 -39.78 -0.43 -3.15 16 18 C -0.03 -0.33 11.94 -16.75 -0.20 -0.53 16 19 N -0.55 -7.43 6.07 -9.12 -0.06 -7.48 16 20 H 0.41 4.59 8.96 -40.82 -0.37 4.22 16 21 H 0.03 0.75 7.33 -51.93 -0.38 0.37 16 22 H 0.04 1.06 7.37 -51.93 -0.38 0.68 16 23 H 0.00 0.05 7.00 -51.93 -0.36 -0.31 16 24 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 25 H 0.04 0.85 8.07 -51.93 -0.42 0.43 16 26 H 0.05 1.09 8.04 -51.93 -0.42 0.67 16 27 H 0.37 5.58 7.93 45.56 0.36 5.95 16 28 H 0.13 1.78 7.56 -52.49 -0.40 1.38 16 29 H 0.13 1.47 8.06 -52.49 -0.42 1.05 16 30 H 0.16 1.41 8.06 -52.49 -0.42 0.99 16 LS Contribution 257.02 15.07 3.87 3.87 Total: -1.00 -32.09 257.02 -6.12 -38.21 By element: Atomic # 1 Polarization: 8.65 SS G_CDS: -3.18 Total: 5.47 kcal Atomic # 6 Polarization: -3.45 SS G_CDS: -1.39 Total: -4.84 kcal Atomic # 7 Polarization: -49.31 SS G_CDS: 0.03 Total: -49.28 kcal Atomic # 8 Polarization: -10.04 SS G_CDS: -0.42 Total: -10.46 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.03 Total: 17.03 kcal Total LS contribution 3.87 Total: 3.87 kcal Total: -32.09 -6.12 -38.21 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259598108.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.629 kcal (2) G-P(sol) polarization free energy of solvation -32.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.211 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds